PDB Short entry for 4USE HEADER TRANSFERASE 07-JUL-14 4USE TITLE HUMAN STK10 (LOK) WITH SB-633825 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE 10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 18-317; COMPND 5 SYNONYM: LYMPHOCYTE-ORIENTED KINASE, STK10; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.ELKINS,E.SALAH,M.SZKLARZ,F.VON DELFT,P.CANNING,J.RAYNOR, AUTHOR 2 C.BOUNTRA,A.M.EDWARDS,S.KNAPP REVDAT 4 24-JAN-18 4USE 1 AUTHOR REVDAT 3 20-JAN-16 4USE 1 JRNL REVDAT 2 04-NOV-15 4USE 1 JRNL REVDAT 1 22-JUL-15 4USE 0 JRNL AUTH J.M.ELKINS,V.FEDELE,M.SZKLARZ,K.R.ABDUL AZEEZ,E.SALAH, JRNL AUTH 2 J.MIKOLAJCZYK,S.ROMANOV,N.SEPETOV,X.P.HUANG,B.L.ROTH, JRNL AUTH 3 A.AL HAJ ZEN,D.FOURCHES,E.MURATOV,A.TROPSHA,J.MORRIS, JRNL AUTH 4 B.A.TEICHER,M.KUNKEL,E.POLLEY,K.E.LACKEY,F.L.ATKINSON, JRNL AUTH 5 J.P.OVERINGTON,P.BAMBOROUGH,S.MOLLER,D.J.PRICE,T.M.WILLSON, JRNL AUTH 6 D.H.DREWRY,S.KNAPP,W.J.ZUERCHER JRNL TITL COMPREHENSIVE CHARACTERIZATION OF THE PUBLISHED KINASE JRNL TITL 2 INHIBITOR SET. JRNL REF NAT.BIOTECHNOL. V. 34 95 2016 JRNL REFN ISSN 1087-0156 JRNL PMID 26501955 JRNL DOI 10.1038/NBT.3374 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 131.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 22179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1192 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1486 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4284 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.08000 REMARK 3 B22 (A**2) : -3.11000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.79000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.591 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.306 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.069 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4461 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4241 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6087 ; 1.268 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9737 ; 0.826 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 560 ; 6.096 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;35.837 ;24.850 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 726 ;16.477 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 706 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4944 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 916 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2252 ; 1.624 ; 3.504 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2251 ; 1.619 ; 3.504 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2805 ; 2.853 ; 5.252 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2209 ; 2.135 ; 3.731 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8204 0.7536 -55.1176 REMARK 3 T TENSOR REMARK 3 T11: 0.4578 T22: 0.7251 REMARK 3 T33: 0.4108 T12: 0.0827 REMARK 3 T13: 0.0896 T23: 0.1337 REMARK 3 L TENSOR REMARK 3 L11: 9.7604 L22: 2.2377 REMARK 3 L33: 1.8562 L12: 2.1195 REMARK 3 L13: -1.9977 L23: 1.0717 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: -0.3354 S13: -0.5461 REMARK 3 S21: 0.4527 S22: -0.5116 S23: 0.4720 REMARK 3 S31: 0.2360 S32: -0.6208 S33: 0.4947 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4832 0.0822 -55.1678 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.0142 REMARK 3 T33: 0.0499 T12: -0.0263 REMARK 3 T13: 0.0305 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.6056 L22: 7.1459 REMARK 3 L33: 4.6006 L12: -1.4545 REMARK 3 L13: 1.3995 L23: 1.5860 REMARK 3 S TENSOR REMARK 3 S11: -0.0806 S12: -0.0783 S13: 0.0485 REMARK 3 S21: 0.2436 S22: -0.0629 S23: 0.5062 REMARK 3 S31: 0.0083 S32: 0.0387 S33: 0.1435 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6311 7.0807 -40.4548 REMARK 3 T TENSOR REMARK 3 T11: 0.9614 T22: 0.6291 REMARK 3 T33: 0.4175 T12: -0.2339 REMARK 3 T13: -0.0804 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 0.8460 L22: 4.8494 REMARK 3 L33: 16.6370 L12: 1.7321 REMARK 3 L13: 2.7595 L23: 8.7738 REMARK 3 S TENSOR REMARK 3 S11: 0.4723 S12: 0.0997 S13: 0.2292 REMARK 3 S21: 1.3504 S22: -0.3226 S23: 0.0274 REMARK 3 S31: 2.5002 S32: -1.1790 S33: -0.1497 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 316 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2036 -0.0683 -47.9762 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.1253 REMARK 3 T33: 0.0519 T12: 0.0063 REMARK 3 T13: -0.0257 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.9177 L22: 5.2683 REMARK 3 L33: 5.0611 L12: 0.5370 REMARK 3 L13: 0.6399 L23: 1.7554 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.2040 S13: 0.0842 REMARK 3 S21: 0.4851 S22: 0.1182 S23: -0.4316 REMARK 3 S31: 0.0079 S32: 0.6369 S33: -0.0807 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5477 -20.5790 -18.3488 REMARK 3 T TENSOR REMARK 3 T11: 1.1032 T22: 1.2629 REMARK 3 T33: 1.1729 T12: 0.0401 REMARK 3 T13: 0.1387 T23: 0.3564 REMARK 3 L TENSOR REMARK 3 L11: 0.6212 L22: 6.5776 REMARK 3 L33: 5.2812 L12: 1.5415 REMARK 3 L13: 1.2351 L23: 5.0427 REMARK 3 S TENSOR REMARK 3 S11: -0.1464 S12: 0.3633 S13: 0.6020 REMARK 3 S21: -0.9192 S22: -0.3619 S23: 1.0555 REMARK 3 S31: -0.6749 S32: -0.7175 S33: 0.5083 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 90 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4957 -21.7311 -9.7021 REMARK 3 T TENSOR REMARK 3 T11: 0.5952 T22: 0.0464 REMARK 3 T33: 0.1123 T12: 0.0398 REMARK 3 T13: 0.1223 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 4.2927 L22: 5.5638 REMARK 3 L33: 5.2259 L12: 1.2028 REMARK 3 L13: -1.9623 L23: 0.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: 0.3779 S13: -0.0394 REMARK 3 S21: -0.0433 S22: -0.0613 S23: 0.6505 REMARK 3 S31: 0.0522 S32: -0.3394 S33: 0.0561 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 189 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7996 -27.4314 -23.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.8614 T22: 0.6260 REMARK 3 T33: 0.3811 T12: 0.1841 REMARK 3 T13: 0.1616 T23: -0.0971 REMARK 3 L TENSOR REMARK 3 L11: 2.3232 L22: 6.3844 REMARK 3 L33: 12.4066 L12: -2.9505 REMARK 3 L13: -3.4598 L23: 8.7571 REMARK 3 S TENSOR REMARK 3 S11: 0.4535 S12: -0.1627 S13: -0.2636 REMARK 3 S21: -1.2380 S22: -0.5990 S23: 0.1371 REMARK 3 S31: -1.6489 S32: -1.0864 S33: 0.1456 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 218 B 316 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3369 -20.6843 -12.7668 REMARK 3 T TENSOR REMARK 3 T11: 0.4597 T22: 0.1305 REMARK 3 T33: 0.0922 T12: -0.0047 REMARK 3 T13: 0.0722 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.4121 L22: 4.9972 REMARK 3 L33: 4.9168 L12: -0.8729 REMARK 3 L13: -1.7222 L23: 1.7675 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: -0.1675 S13: -0.1083 REMARK 3 S21: -0.0404 S22: 0.1564 S23: -0.5706 REMARK 3 S31: -0.0056 S32: 0.7741 S33: -0.0841 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4USE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1290061187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PIXEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23790 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 65.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% (V/V) PEG 300, 0.1M CACODYLATE PH REMARK 280 6.5, 0.2M MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.12500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 16 REMARK 465 MET A 17 REMARK 465 ARG A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 ARG A 21 REMARK 465 GLU A 22 REMARK 465 TYR A 23 REMARK 465 LYS A 188 REMARK 465 ARG A 189 REMARK 465 ASP A 190 REMARK 465 SER A 191 REMARK 465 PHE A 192 REMARK 465 ILE A 193 REMARK 465 GLY A 194 REMARK 465 GLU A 317 REMARK 465 SER B 16 REMARK 465 MET B 17 REMARK 465 ARG B 18 REMARK 465 LYS B 19 REMARK 465 SER B 20 REMARK 465 ARG B 21 REMARK 465 GLU B 22 REMARK 465 TYR B 23 REMARK 465 GLU B 68 REMARK 465 THR B 69 REMARK 465 LYS B 70 REMARK 465 SER B 71 REMARK 465 HIS B 102 REMARK 465 ASP B 103 REMARK 465 GLY B 104 REMARK 465 LYS B 105 REMARK 465 LEU B 106 REMARK 465 ARG B 189 REMARK 465 ASP B 190 REMARK 465 SER B 191 REMARK 465 PHE B 192 REMARK 465 ILE B 193 REMARK 465 GLY B 194 REMARK 465 GLU B 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 30 CG CD1 CD2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 LYS A 49 CE NZ REMARK 470 LYS A 54 CE NZ REMARK 470 LYS A 56 CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 LYS A 105 NZ REMARK 470 ARG A 152 NE CZ NH1 NH2 REMARK 470 LYS A 184 NZ REMARK 470 LEU A 186 CG CD1 CD2 REMARK 470 GLN A 187 CG CD OE1 NE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 LYS A 251 CD CE NZ REMARK 470 LYS A 272 CE NZ REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 29 CG OD1 OD2 REMARK 470 LEU B 30 CG CD1 CD2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 GLU B 41 CD OE1 OE2 REMARK 470 PHE B 47 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 49 CD CE NZ REMARK 470 LYS B 54 CE NZ REMARK 470 ASN B 55 CG OD1 ND2 REMARK 470 LYS B 56 CE NZ REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 ASP B 77 CG OD1 OD2 REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 TYR B 101 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 156 CD NE CZ NH1 NH2 REMARK 470 LYS B 181 CE NZ REMARK 470 LYS B 184 CE NZ REMARK 470 LEU B 186 CG CD1 CD2 REMARK 470 GLN B 187 CG CD OE1 NE2 REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 LYS B 251 CD CE NZ REMARK 470 LYS B 272 CE NZ REMARK 470 LYS B 311 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 212 N TYR A 214 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 152 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 30 107.54 68.62 REMARK 500 LEU A 42 -53.66 -140.06 REMARK 500 ALA A 46 -58.52 -163.88 REMARK 500 SER A 71 140.31 94.74 REMARK 500 GLU A 76 -36.05 -39.44 REMARK 500 ASP A 103 -139.99 66.75 REMARK 500 ASP A 157 36.52 -148.81 REMARK 500 LEU A 183 25.42 -71.76 REMARK 500 PRO A 196 50.84 -97.26 REMARK 500 ASP A 211 -72.73 -86.98 REMARK 500 THR A 212 -131.21 -141.11 REMARK 500 PRO A 213 -24.15 -29.66 REMARK 500 ILE A 233 -42.66 75.94 REMARK 500 LEU B 30 108.93 70.15 REMARK 500 LEU B 42 -53.74 -140.72 REMARK 500 ALA B 46 -57.15 -165.51 REMARK 500 GLU B 57 -70.04 -75.82 REMARK 500 GLU B 76 -35.97 -39.55 REMARK 500 ASP B 157 36.84 -149.12 REMARK 500 PRO B 196 50.90 -96.21 REMARK 500 ASP B 211 -88.52 -65.62 REMARK 500 THR B 212 -19.52 -159.08 REMARK 500 ILE B 233 -42.92 75.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 212 PRO A 213 -147.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R09 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R09 B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4USD RELATED DB: PDB REMARK 900 HUMAN STK10 (LOK) WITH SB-633825 REMARK 900 RELATED ID: 4USF RELATED DB: PDB REMARK 900 HUMAN SLK WITH SB-440719 DBREF 4USE A 18 317 UNP O94804 STK10_HUMAN 18 317 DBREF 4USE B 18 317 UNP O94804 STK10_HUMAN 18 317 SEQADV 4USE SER A 16 UNP O94804 EXPRESSION TAG SEQADV 4USE MET A 17 UNP O94804 EXPRESSION TAG SEQADV 4USE SER B 16 UNP O94804 EXPRESSION TAG SEQADV 4USE MET B 17 UNP O94804 EXPRESSION TAG SEQRES 1 A 302 SER MET ARG LYS SER ARG GLU TYR GLU HIS VAL ARG ARG SEQRES 2 A 302 ASP LEU ASP PRO ASN GLU VAL TRP GLU ILE VAL GLY GLU SEQRES 3 A 302 LEU GLY ASP GLY ALA PHE GLY LYS VAL TYR LYS ALA LYS SEQRES 4 A 302 ASN LYS GLU THR GLY ALA LEU ALA ALA ALA LYS VAL ILE SEQRES 5 A 302 GLU THR LYS SER GLU GLU GLU LEU GLU ASP TYR ILE VAL SEQRES 6 A 302 GLU ILE GLU ILE LEU ALA THR CYS ASP HIS PRO TYR ILE SEQRES 7 A 302 VAL LYS LEU LEU GLY ALA TYR TYR HIS ASP GLY LYS LEU SEQRES 8 A 302 TRP ILE MET ILE GLU PHE CYS PRO GLY GLY ALA VAL ASP SEQRES 9 A 302 ALA ILE MET LEU GLU LEU ASP ARG GLY LEU THR GLU PRO SEQRES 10 A 302 GLN ILE GLN VAL VAL CYS ARG GLN MET LEU GLU ALA LEU SEQRES 11 A 302 ASN PHE LEU HIS SER LYS ARG ILE ILE HIS ARG ASP LEU SEQRES 12 A 302 LYS ALA GLY ASN VAL LEU MET THR LEU GLU GLY ASP ILE SEQRES 13 A 302 ARG LEU ALA ASP PHE GLY VAL SER ALA LYS ASN LEU LYS SEQRES 14 A 302 THR LEU GLN LYS ARG ASP SER PHE ILE GLY THR PRO TYR SEQRES 15 A 302 TRP MET ALA PRO GLU VAL VAL MET CYS GLU THR MET LYS SEQRES 16 A 302 ASP THR PRO TYR ASP TYR LYS ALA ASP ILE TRP SER LEU SEQRES 17 A 302 GLY ILE THR LEU ILE GLU MET ALA GLN ILE GLU PRO PRO SEQRES 18 A 302 HIS HIS GLU LEU ASN PRO MET ARG VAL LEU LEU LYS ILE SEQRES 19 A 302 ALA LYS SER ASP PRO PRO THR LEU LEU THR PRO SER LYS SEQRES 20 A 302 TRP SER VAL GLU PHE ARG ASP PHE LEU LYS ILE ALA LEU SEQRES 21 A 302 ASP LYS ASN PRO GLU THR ARG PRO SER ALA ALA GLN LEU SEQRES 22 A 302 LEU GLU HIS PRO PHE VAL SER SER ILE THR SER ASN LYS SEQRES 23 A 302 ALA LEU ARG GLU LEU VAL ALA GLU ALA LYS ALA GLU VAL SEQRES 24 A 302 MET GLU GLU SEQRES 1 B 302 SER MET ARG LYS SER ARG GLU TYR GLU HIS VAL ARG ARG SEQRES 2 B 302 ASP LEU ASP PRO ASN GLU VAL TRP GLU ILE VAL GLY GLU SEQRES 3 B 302 LEU GLY ASP GLY ALA PHE GLY LYS VAL TYR LYS ALA LYS SEQRES 4 B 302 ASN LYS GLU THR GLY ALA LEU ALA ALA ALA LYS VAL ILE SEQRES 5 B 302 GLU THR LYS SER GLU GLU GLU LEU GLU ASP TYR ILE VAL SEQRES 6 B 302 GLU ILE GLU ILE LEU ALA THR CYS ASP HIS PRO TYR ILE SEQRES 7 B 302 VAL LYS LEU LEU GLY ALA TYR TYR HIS ASP GLY LYS LEU SEQRES 8 B 302 TRP ILE MET ILE GLU PHE CYS PRO GLY GLY ALA VAL ASP SEQRES 9 B 302 ALA ILE MET LEU GLU LEU ASP ARG GLY LEU THR GLU PRO SEQRES 10 B 302 GLN ILE GLN VAL VAL CYS ARG GLN MET LEU GLU ALA LEU SEQRES 11 B 302 ASN PHE LEU HIS SER LYS ARG ILE ILE HIS ARG ASP LEU SEQRES 12 B 302 LYS ALA GLY ASN VAL LEU MET THR LEU GLU GLY ASP ILE SEQRES 13 B 302 ARG LEU ALA ASP PHE GLY VAL SER ALA LYS ASN LEU LYS SEQRES 14 B 302 THR LEU GLN LYS ARG ASP SER PHE ILE GLY THR PRO TYR SEQRES 15 B 302 TRP MET ALA PRO GLU VAL VAL MET CYS GLU THR MET LYS SEQRES 16 B 302 ASP THR PRO TYR ASP TYR LYS ALA ASP ILE TRP SER LEU SEQRES 17 B 302 GLY ILE THR LEU ILE GLU MET ALA GLN ILE GLU PRO PRO SEQRES 18 B 302 HIS HIS GLU LEU ASN PRO MET ARG VAL LEU LEU LYS ILE SEQRES 19 B 302 ALA LYS SER ASP PRO PRO THR LEU LEU THR PRO SER LYS SEQRES 20 B 302 TRP SER VAL GLU PHE ARG ASP PHE LEU LYS ILE ALA LEU SEQRES 21 B 302 ASP LYS ASN PRO GLU THR ARG PRO SER ALA ALA GLN LEU SEQRES 22 B 302 LEU GLU HIS PRO PHE VAL SER SER ILE THR SER ASN LYS SEQRES 23 B 302 ALA LEU ARG GLU LEU VAL ALA GLU ALA LYS ALA GLU VAL SEQRES 24 B 302 MET GLU GLU HET R09 A 500 35 HET R09 B 500 35 HETNAM R09 4-{5-(6-METHOXYNAPHTHALEN-2-YL)-1-METHYL-2-[2-METHYL-4- HETNAM 2 R09 (METHYLSULFONYL)PHENYL]-1H-IMIDAZOL-4-YL}PYRIDINE FORMUL 3 R09 2(C28 H25 N3 O3 S) FORMUL 5 HOH *16(H2 O) HELIX 1 1 SER A 71 CYS A 88 1 18 HELIX 2 2 VAL A 118 LEU A 125 1 8 HELIX 3 3 THR A 130 LYS A 151 1 22 HELIX 4 4 LYS A 159 GLY A 161 5 3 HELIX 5 5 PHE A 176 LEU A 183 1 8 HELIX 6 6 ALA A 200 THR A 212 1 13 HELIX 7 7 ASP A 215 ILE A 233 1 19 HELIX 8 8 ASN A 241 SER A 252 1 12 HELIX 9 9 SER A 264 LEU A 275 1 12 HELIX 10 10 SER A 284 LEU A 289 1 6 HELIX 11 11 HIS A 291 SER A 296 1 6 HELIX 12 12 ASN A 300 GLU A 316 1 17 HELIX 13 13 LEU B 75 CYS B 88 1 14 HELIX 14 14 VAL B 118 LEU B 125 1 8 HELIX 15 15 THR B 130 LYS B 151 1 22 HELIX 16 16 LYS B 159 GLY B 161 5 3 HELIX 17 17 PHE B 176 GLN B 187 1 12 HELIX 18 18 ALA B 200 THR B 212 1 13 HELIX 19 19 ASP B 215 ILE B 233 1 19 HELIX 20 20 ASN B 241 SER B 252 1 12 HELIX 21 21 SER B 264 LEU B 275 1 12 HELIX 22 22 SER B 284 LEU B 289 1 6 HELIX 23 23 HIS B 291 SER B 296 1 6 HELIX 24 24 ASN B 300 GLU B 316 1 17 SHEET 1 AA 5 TRP A 36 GLU A 41 0 SHEET 2 AA 5 TYR A 51 ASN A 55 -1 O LYS A 52 N VAL A 39 SHEET 3 AA 5 LEU A 61 GLU A 68 -1 O ALA A 62 N ALA A 53 SHEET 4 AA 5 LYS A 105 GLU A 111 -1 O LEU A 106 N ILE A 67 SHEET 5 AA 5 LEU A 96 HIS A 102 -1 N LEU A 97 O MET A 109 SHEET 1 AB 3 GLY A 116 ALA A 117 0 SHEET 2 AB 3 VAL A 163 MET A 165 -1 N MET A 165 O GLY A 116 SHEET 3 AB 3 ILE A 171 LEU A 173 -1 O ARG A 172 N LEU A 164 SHEET 1 BA 5 TRP B 36 GLU B 41 0 SHEET 2 BA 5 TYR B 51 ASN B 55 -1 O LYS B 52 N VAL B 39 SHEET 3 BA 5 LEU B 61 LYS B 65 -1 O ALA B 62 N ALA B 53 SHEET 4 BA 5 ILE B 108 GLU B 111 -1 O ILE B 108 N LYS B 65 SHEET 5 BA 5 LEU B 96 ALA B 99 -1 N LEU B 97 O MET B 109 SHEET 1 BB 3 GLY B 116 ALA B 117 0 SHEET 2 BB 3 VAL B 163 MET B 165 -1 N MET B 165 O GLY B 116 SHEET 3 BB 3 ILE B 171 LEU B 173 -1 O ARG B 172 N LEU B 164 SSBOND 1 CYS A 206 CYS B 206 1555 1565 2.54 SITE 1 AC1 8 ALA A 63 ILE A 108 ILE A 110 PHE A 112 SITE 2 AC1 8 CYS A 113 ALA A 117 GLY A 161 LEU A 164 SITE 1 AC2 7 ALA B 63 GLU B 81 ILE B 108 ILE B 110 SITE 2 AC2 7 CYS B 113 GLY B 161 LEU B 164 CRYST1 62.040 50.250 133.710 90.00 101.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016119 0.000000 0.003180 0.00000 SCALE2 0.000000 0.019900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007623 0.00000