PDB Short entry for 4UYK HEADER SIGNALING PROTEIN 01-SEP-14 4UYK TITLE CRYSTAL STRUCTURE OF A SIGNAL RECOGNITION PARTICLE ALU TITLE 2 DOMAIN IN THE ELONGATION ARREST CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-85; COMPND 5 SYNONYM: SRP9; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 1-107; COMPND 11 SYNONYM: SRP14,18 KDA ALU RNA-BINDING PROTEIN; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: SRP RNA; COMPND 15 CHAIN: R; COMPND 16 FRAGMENT: ALU DOMAIN, RESIDUES 1-89 AND RESIDUES 289-314 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET9A; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEH9; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PET9A; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PEH14DELTAR; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII OT3; SOURCE 22 ORGANISM_TAXID: 70601 KEYWDS SIGNALING PROTEIN, SIGNAL RECOGNITION PARTICLE, TRANSLATION, RNA, KEYWDS 2 RNA FOLDING EXPDTA X-RAY DIFFRACTION AUTHOR L.BOUSSET,C.MARY,M.A.BROOKS,A.SCHERRER,K.STRUB,S.CUSACK REVDAT 2 03-DEC-14 4UYK 1 JRNL REVDAT 1 05-NOV-14 4UYK 0 JRNL AUTH L.BOUSSET,C.MARY,M.A.BROOKS,A.SCHERRER,K.STRUB,S.CUSACK JRNL TITL CRYSTAL STRUCTURE OF A SIGNAL RECOGNITION PARTICLE ALU JRNL TITL 2 DOMAIN IN THE ELONGATION ARREST CONFORMATION. JRNL REF RNA V. 20 1955 2014 JRNL REFN ISSN 1355-8382 JRNL PMID 25336584 JRNL DOI 10.1261/RNA.047209.114 REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.30 REMARK 3 NUMBER OF REFLECTIONS : 16238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.19365 REMARK 3 R VALUE (WORKING SET) : 0.19160 REMARK 3 FREE R VALUE : 0.23315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 854 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.220 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.304 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.338 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.445 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1377 REMARK 3 NUCLEIC ACID ATOMS : 2882 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 123.705 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.44 REMARK 3 B22 (A**2) : 3.44 REMARK 3 B33 (A**2) : -6.89 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.392 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.338 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 48.231 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4624 ; 0.005 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2738 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6910 ; 1.116 ; 1.478 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6462 ; 1.071 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 171 ; 6.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;33.828 ;23.966 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;19.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.631 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 752 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3158 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1049 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 690 ; 2.790 ; 6.421 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 689 ; 2.788 ; 6.419 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 859 ; 4.816 ; 9.598 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 860 ; 4.813 ; 9.602 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3934 ; 2.520 ; 7.392 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3935 ; 2.519 ; 7.392 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6051 ; 4.189 ;11.068 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5914 ; 7.091 ;71.367 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5915 ; 7.091 ;71.368 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): 93.9689 57.9997 9.2527 REMARK 3 T TENSOR REMARK 3 T11: 0.4897 T22: 0.8557 REMARK 3 T33: 0.7557 T12: -0.0016 REMARK 3 T13: 0.0586 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.0204 L22: 3.9951 REMARK 3 L33: 1.7651 L12: -0.0338 REMARK 3 L13: -0.1080 L23: -1.0708 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: -0.0514 S13: 0.0489 REMARK 3 S21: -0.1309 S22: -0.4436 S23: -0.8341 REMARK 3 S31: -0.2435 S32: 0.8179 S33: 0.3766 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 89.2823 51.2755 12.3263 REMARK 3 T TENSOR REMARK 3 T11: 0.5762 T22: 0.7538 REMARK 3 T33: 0.2898 T12: 0.0649 REMARK 3 T13: -0.1105 T23: -0.2454 REMARK 3 L TENSOR REMARK 3 L11: 5.4347 L22: 3.0253 REMARK 3 L33: 4.3278 L12: -1.7840 REMARK 3 L13: -2.0727 L23: 1.0933 REMARK 3 S TENSOR REMARK 3 S11: -0.1229 S12: -0.8320 S13: 0.1467 REMARK 3 S21: -0.0876 S22: 0.7300 S23: -0.2189 REMARK 3 S31: 0.4075 S32: 0.0072 S33: -0.6071 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 42 REMARK 3 ORIGIN FOR THE GROUP (A): 76.7156 43.7815 7.3572 REMARK 3 T TENSOR REMARK 3 T11: 0.6040 T22: 0.6956 REMARK 3 T33: 0.3819 T12: 0.0874 REMARK 3 T13: -0.0155 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 2.0998 L22: 0.7287 REMARK 3 L33: 3.3652 L12: 0.1659 REMARK 3 L13: 1.5837 L23: 1.2374 REMARK 3 S TENSOR REMARK 3 S11: 0.2997 S12: -0.3600 S13: 0.0861 REMARK 3 S21: 0.0555 S22: -0.1080 S23: 0.0813 REMARK 3 S31: 0.5004 S32: -0.2427 S33: -0.1917 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): 78.9886 46.8283 13.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.8135 T22: 0.8449 REMARK 3 T33: 0.1325 T12: 0.0758 REMARK 3 T13: 0.0583 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.5155 L22: 3.1019 REMARK 3 L33: 2.2616 L12: -1.5530 REMARK 3 L13: 0.8181 L23: 1.5459 REMARK 3 S TENSOR REMARK 3 S11: -0.1611 S12: -0.4413 S13: -0.0585 REMARK 3 S21: 0.3480 S22: 0.0837 S23: 0.1876 REMARK 3 S31: 0.3494 S32: -0.3395 S33: 0.0774 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 6 R 85 REMARK 3 ORIGIN FOR THE GROUP (A): 81.6864 37.3684 -12.4402 REMARK 3 T TENSOR REMARK 3 T11: 0.6970 T22: 0.5738 REMARK 3 T33: 0.3764 T12: -0.0422 REMARK 3 T13: -0.0276 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.4647 L22: 1.6873 REMARK 3 L33: 0.8170 L12: -0.8709 REMARK 3 L13: -0.5516 L23: 1.0188 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: -0.1026 S13: -0.0465 REMARK 3 S21: -0.0528 S22: 0.2524 S23: 0.0908 REMARK 3 S31: 0.0829 S32: 0.0631 S33: -0.1786 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 86 R 117 REMARK 3 ORIGIN FOR THE GROUP (A): 124.5581 30.7150 16.4420 REMARK 3 T TENSOR REMARK 3 T11: 1.6038 T22: 0.9007 REMARK 3 T33: 0.5646 T12: 0.0731 REMARK 3 T13: -0.5660 T23: 0.2101 REMARK 3 L TENSOR REMARK 3 L11: 3.5925 L22: 0.2228 REMARK 3 L33: 6.5571 L12: -0.7722 REMARK 3 L13: 4.3450 L23: -1.1131 REMARK 3 S TENSOR REMARK 3 S11: 0.2060 S12: 0.4723 S13: -0.7438 REMARK 3 S21: 0.2407 S22: -0.0493 S23: 0.0984 REMARK 3 S31: -1.0379 S32: 0.9666 S33: -0.1568 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 118 R 139 REMARK 3 ORIGIN FOR THE GROUP (A): 83.9587 51.5996 -21.0442 REMARK 3 T TENSOR REMARK 3 T11: 0.6851 T22: 0.5483 REMARK 3 T33: 0.2626 T12: -0.0062 REMARK 3 T13: 0.0835 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.4602 L22: 2.0884 REMARK 3 L33: 0.5654 L12: -2.0134 REMARK 3 L13: -0.2286 L23: 0.5075 REMARK 3 S TENSOR REMARK 3 S11: 0.3062 S12: 0.0607 S13: 0.1972 REMARK 3 S21: -0.4767 S22: -0.0479 S23: -0.2728 REMARK 3 S31: -0.2233 S32: 0.3315 S33: -0.2583 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4UYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-14. REMARK 100 THE PDBE ID CODE IS EBI-61643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30821 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.20 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.18 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.09 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.18 REMARK 200 R MERGE FOR SHELL (I) : 0.64 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.74 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.3 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5% PEG 400, 5% GLYCEROL REMARK 280 BUFFERED IN 100 MM SODIUM ACETATE PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.73500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.43000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.10250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.43000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.36750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.43000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 148.10250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.43000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.36750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.73500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLU A 84 REMARK 465 THR A 85 REMARK 465 LYS B 43 REMARK 465 GLY B 44 REMARK 465 THR B 45 REMARK 465 VAL B 46 REMARK 465 GLU B 47 REMARK 465 GLY B 48 REMARK 465 PHE B 49 REMARK 465 ASP B 98 REMARK 465 LYS B 99 REMARK 465 LYS B 100 REMARK 465 ASN B 101 REMARK 465 LYS B 102 REMARK 465 THR B 103 REMARK 465 LYS B 104 REMARK 465 LYS B 105 REMARK 465 THR B 106 REMARK 465 LYS B 107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G R 6 OP3 G R 6 P -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 91.53 -163.36 REMARK 500 ASP A 45 -18.06 72.75 REMARK 500 LYS A 76 -72.59 -61.83 REMARK 500 LYS B 31 132.31 -170.45 REMARK 500 ARG B 36 121.55 -37.81 REMARK 500 LYS B 64 -64.98 -102.84 REMARK 500 LYS B 74 -39.57 -37.94 REMARK 500 MSE B 91 37.94 -91.08 REMARK 500 LEU B 94 -169.95 -128.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UYJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SIGNAL RECOGNITION PARTICLE ALU REMARK 900 DOMAIN IN THE ELONGATION ARREST CONFORMATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 HUMAN SRP9 RESIDUES 1 TO 85 WERE EXPRESSED IN THIS WORK REMARK 999 HUMAN SRP14 RESIDUES 1 TO 107 WERE EXPRESSED IN THIS WORK REMARK 999 THE P. HORIKOSHII SRP ALU RNA SEQUENCE HAS THE S-DOMAIN REMARK 999 DELETED, AND REPLACED BY A TETRA LOOP. CCC (CYCLIC REMARK 999 CYTIDINE), PRODUCED DURING IN-VITRO TRANSCRIPTION. DBREF 4UYK A 1 85 UNP P49458 SRP09_HUMAN 1 85 DBREF 4UYK B 1 107 UNP P37108 SRP14_HUMAN 1 107 DBREF 4UYK R 7 98 GB HG323574 527046612 7 98 DBREF 4UYK R 99 139 GB HG323574 527046612 274 314 SEQADV 4UYK G R 6 GB 527046612 EXPRESSION TAG SEQRES 1 A 85 MSE PRO GLN TYR GLN THR TRP GLU GLU PHE SER ARG ALA SEQRES 2 A 85 ALA GLU LYS LEU TYR LEU ALA ASP PRO MSE LYS ALA ARG SEQRES 3 A 85 VAL VAL LEU LYS TYR ARG HIS SER ASP GLY ASN LEU CYS SEQRES 4 A 85 VAL LYS VAL THR ASP ASP LEU VAL CYS LEU VAL TYR LYS SEQRES 5 A 85 THR ASP GLN ALA GLN ASP VAL LYS LYS ILE GLU LYS PHE SEQRES 6 A 85 HIS SER GLN LEU MSE ARG LEU MSE VAL ALA LYS GLU ALA SEQRES 7 A 85 ARG ASN VAL THR MSE GLU THR SEQRES 1 B 107 MSE VAL LEU LEU GLU SER GLU GLN PHE LEU THR GLU LEU SEQRES 2 B 107 THR ARG LEU PHE GLN LYS CYS ARG THR SER GLY SER VAL SEQRES 3 B 107 TYR ILE THR LEU LYS LYS TYR ASP GLY ARG THR LYS PRO SEQRES 4 B 107 ILE PRO LYS LYS GLY THR VAL GLU GLY PHE GLU PRO ALA SEQRES 5 B 107 ASP ASN LYS CYS LEU LEU ARG ALA THR ASP GLY LYS LYS SEQRES 6 B 107 LYS ILE SER THR VAL VAL SER SER LYS GLU VAL ASN LYS SEQRES 7 B 107 PHE GLN MSE ALA TYR SER ASN LEU LEU ARG ALA ASN MSE SEQRES 8 B 107 ASP GLY LEU LYS LYS ARG ASP LYS LYS ASN LYS THR LYS SEQRES 9 B 107 LYS THR LYS SEQRES 1 R 134 G G G G C U A G G C C G G SEQRES 2 R 134 G G G G U U C G G C G U C SEQRES 3 R 134 C C C U G U A A C C G G A SEQRES 4 R 134 A A C C G C C G A U A U G SEQRES 5 R 134 C C G G G G C C G A A G C SEQRES 6 R 134 C C G A G G G G C G G U U SEQRES 7 R 134 C C C G A A G C C G C C U SEQRES 8 R 134 C U G U A A G G A G G C G SEQRES 9 R 134 G U G G A G G G U U C C C SEQRES 10 R 134 A C C C U C G G G C G U G SEQRES 11 R 134 C C U CCC MODRES 4UYK MSE A 23 MET SELENOMETHIONINE MODRES 4UYK MSE A 70 MET SELENOMETHIONINE MODRES 4UYK MSE A 73 MET SELENOMETHIONINE MODRES 4UYK MSE A 83 MET SELENOMETHIONINE MODRES 4UYK MSE B 1 MET SELENOMETHIONINE MODRES 4UYK MSE B 81 MET SELENOMETHIONINE MODRES 4UYK MSE B 91 MET SELENOMETHIONINE MODRES 4UYK CCC R 139 C CYCLIC CMP HET MSE A 23 8 HET MSE A 70 8 HET MSE A 73 8 HET MSE A 83 8 HET MSE B 1 8 HET MSE B 81 8 HET MSE B 91 8 HET CCC R 139 23 HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM MSE SELENOMETHIONINE FORMUL 4 CCC C9 H13 N3 O10 P2 FORMUL 5 MSE 7(C5 H11 N O2 SE) HELIX 1 1 THR A 6 ASP A 21 1 16 HELIX 2 2 GLN A 55 ALA A 75 1 21 HELIX 3 3 GLU A 77 VAL A 81 5 5 HELIX 4 4 GLU B 5 CYS B 20 1 16 HELIX 5 5 SER B 73 MSE B 91 1 19 SHEET 1 AA 7 CYS A 48 THR A 53 0 SHEET 2 AA 7 ASN A 37 THR A 43 -1 O LEU A 38 N THR A 53 SHEET 3 AA 7 ARG A 26 ARG A 32 -1 O ARG A 26 N THR A 43 SHEET 4 AA 7 VAL B 26 TYR B 33 -1 O VAL B 26 N TYR A 31 SHEET 5 AA 7 LYS B 55 THR B 61 -1 O LYS B 55 N TYR B 33 SHEET 6 AA 7 LYS B 66 SER B 72 -1 O ILE B 67 N ALA B 60 SHEET 7 AA 7 VAL B 2 LEU B 3 1 O VAL B 2 N SER B 68 LINK C PRO A 22 N MSE A 23 1555 1555 1.33 LINK C MSE A 23 N LYS A 24 1555 1555 1.33 LINK C LEU A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N ARG A 71 1555 1555 1.33 LINK C LEU A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N VAL A 74 1555 1555 1.33 LINK C THR A 82 N MSE A 83 1555 1555 1.33 LINK C MSE B 1 N VAL B 2 1555 1555 1.33 LINK C GLN B 80 N MSE B 81 1555 1555 1.33 LINK C MSE B 81 N ALA B 82 1555 1555 1.33 LINK C ASN B 90 N MSE B 91 1555 1555 1.33 LINK C MSE B 91 N ASP B 92 1555 1555 1.33 LINK O3' U R 138 P CCC R 139 1555 1555 1.60 CRYST1 100.860 100.860 197.470 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005064 0.00000