PDB Short entry for 4UZ5 HEADER HYDROLASE 04-SEP-14 4UZ5 TITLE STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM IV - 2.1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOTUM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 80-452; COMPND 5 EC: 3.1.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: GLYCOSYLATED AT N96 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS HYDROLASE, ESTERASE, EXTRACELLULAR, ALPHA/BETA HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZEBISCH,E.Y.JONES REVDAT 3 29-JUL-20 4UZ5 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 18-MAR-15 4UZ5 1 JRNL REVDAT 1 25-FEB-15 4UZ5 0 JRNL AUTH S.KAKUGAWA,P.F.LANGTON,M.ZEBISCH,S.A.HOWELL,T.CHANG,Y.LIU, JRNL AUTH 2 T.FEIZI,G.BINEVA,N.O'REILLY,A.P.SNIJDERS,E.Y.JONES,J.VINCENT JRNL TITL NOTUM DEACYLATES WNT PROTEINS TO SUPPRESS SIGNALLING JRNL TITL 2 ACTIVITY. JRNL REF NATURE V. 519 187 2015 JRNL REFN ISSN 0028-0836 JRNL PMID 25731175 JRNL DOI 10.1038/NATURE14259 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 97.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1868 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.873 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2902 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2663 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3956 ; 1.504 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6099 ; 0.817 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 350 ; 6.216 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;36.152 ;22.553 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;13.178 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.033 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3295 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 726 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1397 ; 2.266 ; 3.231 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1396 ; 2.257 ; 3.228 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1742 ; 3.398 ; 4.828 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1505 ; 3.380 ; 3.732 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 451 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6694 18.0125 -13.3796 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: 0.0608 REMARK 3 T33: 0.0454 T12: 0.0067 REMARK 3 T13: -0.0110 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.1714 L22: 0.7453 REMARK 3 L33: 0.6822 L12: 0.4021 REMARK 3 L13: -0.2091 L23: -0.1657 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: 0.0265 S13: 0.0182 REMARK 3 S21: -0.0528 S22: -0.0012 S23: 0.0869 REMARK 3 S31: 0.0396 S32: 0.1118 S33: 0.0437 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UZ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 69.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 %W/V PEG4000, 0.01 M CACL2, 0.05 M REMARK 280 NACACOD PH 6.0, 0.20 M KCL, 1 MM HEPARIN HEXAMER REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.20800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.20800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.20800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.20800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.20800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.20800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.20800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.20800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.20800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.20800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.20800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.20800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.20800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.20800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.20800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.20800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.20800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.20800 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 103.81200 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 34.60400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 34.60400 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 103.81200 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 103.81200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 103.81200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 34.60400 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 34.60400 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 103.81200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 34.60400 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 103.81200 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 34.60400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 103.81200 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 34.60400 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 34.60400 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 34.60400 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 103.81200 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 34.60400 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 103.81200 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 103.81200 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 103.81200 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 34.60400 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 34.60400 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 103.81200 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 103.81200 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 34.60400 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 34.60400 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 34.60400 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 34.60400 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 103.81200 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 34.60400 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 103.81200 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 34.60400 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 103.81200 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 103.81200 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 103.81200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2025 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 78 REMARK 465 THR A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 ALA A 82 REMARK 465 GLN A 83 REMARK 465 GLN A 84 REMARK 465 LEU A 85 REMARK 465 ASN A 86 REMARK 465 SER A 193 REMARK 465 LYS A 194 REMARK 465 SER A 195 REMARK 465 GLU A 196 REMARK 465 LYS A 197 REMARK 465 ASP A 420 REMARK 465 SER A 421 REMARK 465 HIS A 422 REMARK 465 LYS A 423 REMARK 465 ALA A 424 REMARK 465 SER A 425 REMARK 465 LYS A 426 REMARK 465 THR A 427 REMARK 465 PRO A 428 REMARK 465 LEU A 429 REMARK 465 LYS A 430 REMARK 465 GLY A 452 REMARK 465 THR A 453 REMARK 465 LYS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 213 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 213 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 218 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 218 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 128 -152.54 59.56 REMARK 500 MET A 143 45.79 -148.96 REMARK 500 ASN A 169 80.61 -152.60 REMARK 500 SER A 232 -128.56 65.65 REMARK 500 CYS A 279 81.86 -68.28 REMARK 500 THR A 352 -156.35 -85.37 REMARK 500 SER A 388 -169.59 -160.90 REMARK 500 GLU A 390 157.72 69.39 REMARK 500 ILE A 391 -37.27 -159.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UYU RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACETYLASE NOTUM - CRYSTAL FORM I IODIDE REMARK 900 COMPLEX - 2.3A REMARK 900 RELATED ID: 4UYW RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM I HEPARIN REMARK 900 FRAGMENT COMPLEX - 1.7A REMARK 900 RELATED ID: 4UYZ RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM II - 2.8A REMARK 900 RELATED ID: 4UZ1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM III - 1.4A REMARK 900 RELATED ID: 4UZ6 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM V - SOS COMPLEX REMARK 900 - 1.9A REMARK 900 RELATED ID: 4UZ7 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACETYLASE NOTUM - CRYSTAL FORM VII - SOS REMARK 900 COMPLEX - 2.2A REMARK 900 RELATED ID: 4UZ9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACETYLASE NOTUM - CRYSTAL FORM VII - SOS REMARK 900 COMPLEX - 2.2A REMARK 900 RELATED ID: 4UZA RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM VIII - REMARK 900 PHOSPHATE COMPLEX - 2.4A REMARK 900 RELATED ID: 4UZJ RELATED DB: PDB REMARK 900 STRUCTURE OF A WNT SIGNAL REGULATOR FROM DROSOPHILA - CRYSTAL FORM REMARK 900 I - 2.4A REMARK 900 RELATED ID: 4UZK RELATED DB: PDB REMARK 900 STRUCTURE OF A WNT SIGNAL REGULATOR FROM DROSOPHILA - CRYSTAL FORM REMARK 900 II - 1.9A REMARK 900 RELATED ID: 4UZL RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM I MYRISTOLEATE REMARK 900 COMPLEX - 2.1A REMARK 900 RELATED ID: 4UZQ RELATED DB: PDB REMARK 900 STRUCTURE OF A WNT SIGNAL REGULATOR COMPLEX - CRYSTAL FORM IX - 1.5A DBREF 4UZ5 A 80 452 UNP Q6P988 NOTUM_HUMAN 80 452 SEQADV 4UZ5 GLU A 78 UNP Q6P988 EXPRESSION TAG SEQADV 4UZ5 THR A 79 UNP Q6P988 EXPRESSION TAG SEQADV 4UZ5 THR A 453 UNP Q6P988 EXPRESSION TAG SEQADV 4UZ5 LYS A 454 UNP Q6P988 EXPRESSION TAG SEQADV 4UZ5 HIS A 455 UNP Q6P988 EXPRESSION TAG SEQADV 4UZ5 HIS A 456 UNP Q6P988 EXPRESSION TAG SEQADV 4UZ5 HIS A 457 UNP Q6P988 EXPRESSION TAG SEQADV 4UZ5 HIS A 458 UNP Q6P988 EXPRESSION TAG SEQADV 4UZ5 HIS A 459 UNP Q6P988 EXPRESSION TAG SEQADV 4UZ5 HIS A 460 UNP Q6P988 EXPRESSION TAG SEQADV 4UZ5 SER A 330 UNP Q6P988 CYS 330 ENGINEERED MUTATION SEQRES 1 A 383 GLU THR GLY SER ALA GLN GLN LEU ASN GLU ASP LEU ARG SEQRES 2 A 383 LEU HIS LEU LEU LEU ASN THR SER VAL THR CYS ASN ASP SEQRES 3 A 383 GLY SER PRO ALA GLY TYR TYR LEU LYS GLU SER ARG GLY SEQRES 4 A 383 SER ARG ARG TRP LEU LEU PHE LEU GLU GLY GLY TRP TYR SEQRES 5 A 383 CYS PHE ASN ARG GLU ASN CYS ASP SER ARG TYR ASP THR SEQRES 6 A 383 MET ARG ARG LEU MET SER SER ARG ASP TRP PRO ARG THR SEQRES 7 A 383 ARG THR GLY THR GLY ILE LEU SER SER GLN PRO GLU GLU SEQRES 8 A 383 ASN PRO TYR TRP TRP ASN ALA ASN MET VAL PHE ILE PRO SEQRES 9 A 383 TYR CYS SER SER ASP VAL TRP SER GLY ALA SER SER LYS SEQRES 10 A 383 SER GLU LYS ASN GLU TYR ALA PHE MET GLY ALA LEU ILE SEQRES 11 A 383 ILE GLN GLU VAL VAL ARG GLU LEU LEU GLY ARG GLY LEU SEQRES 12 A 383 SER GLY ALA LYS VAL LEU LEU LEU ALA GLY SER SER ALA SEQRES 13 A 383 GLY GLY THR GLY VAL LEU LEU ASN VAL ASP ARG VAL ALA SEQRES 14 A 383 GLU GLN LEU GLU LYS LEU GLY TYR PRO ALA ILE GLN VAL SEQRES 15 A 383 ARG GLY LEU ALA ASP SER GLY TRP PHE LEU ASP ASN LYS SEQRES 16 A 383 GLN TYR ARG HIS THR ASP CYS VAL ASP THR ILE THR CYS SEQRES 17 A 383 ALA PRO THR GLU ALA ILE ARG ARG GLY ILE ARG TYR TRP SEQRES 18 A 383 ASN GLY VAL VAL PRO GLU ARG CYS ARG ARG GLN PHE GLN SEQRES 19 A 383 GLU GLY GLU GLU TRP ASN CYS PHE PHE GLY TYR LYS VAL SEQRES 20 A 383 TYR PRO THR LEU ARG SER PRO VAL PHE VAL VAL GLN TRP SEQRES 21 A 383 LEU PHE ASP GLU ALA GLN LEU THR VAL ASP ASN VAL HIS SEQRES 22 A 383 LEU THR GLY GLN PRO VAL GLN GLU GLY LEU ARG LEU TYR SEQRES 23 A 383 ILE GLN ASN LEU GLY ARG GLU LEU ARG HIS THR LEU LYS SEQRES 24 A 383 ASP VAL PRO ALA SER PHE ALA PRO ALA CYS LEU SER HIS SEQRES 25 A 383 GLU ILE ILE ILE ARG SER HIS TRP THR ASP VAL GLN VAL SEQRES 26 A 383 LYS GLY THR SER LEU PRO ARG ALA LEU HIS CYS TRP ASP SEQRES 27 A 383 ARG SER LEU HIS ASP SER HIS LYS ALA SER LYS THR PRO SEQRES 28 A 383 LEU LYS GLY CYS PRO VAL HIS LEU VAL ASP SER CYS PRO SEQRES 29 A 383 TRP PRO HIS CYS ASN PRO SER CYS PRO THR GLY THR LYS SEQRES 30 A 383 HIS HIS HIS HIS HIS HIS MODRES 4UZ5 ASN A 96 ASN GLYCOSYLATION SITE HET NAG A1452 14 HET CL A1453 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION FORMUL 2 NAG C8 H15 N O6 FORMUL 3 CL CL 1- FORMUL 4 HOH *84(H2 O) HELIX 1 1 ASN A 132 MET A 143 1 12 HELIX 2 2 ARG A 144 SER A 148 5 5 HELIX 3 3 THR A 159 SER A 163 5 5 HELIX 4 4 MET A 203 GLY A 217 1 15 HELIX 5 5 ARG A 218 ALA A 223 5 6 HELIX 6 6 SER A 232 LEU A 252 1 21 HELIX 7 7 ALA A 286 ASN A 299 1 14 HELIX 8 8 PRO A 303 ARG A 308 1 6 HELIX 9 9 GLU A 314 PHE A 319 5 6 HELIX 10 10 PHE A 320 TYR A 325 1 6 HELIX 11 11 PRO A 326 LEU A 328 5 3 HELIX 12 12 GLU A 341 ASP A 347 1 7 HELIX 13 13 GLN A 357 LYS A 376 1 20 HELIX 14 14 ARG A 394 ASP A 399 5 6 HELIX 15 15 LEU A 407 HIS A 419 1 13 SHEET 1 AA10 THR A 155 ARG A 156 0 SHEET 2 AA10 LEU A 89 LEU A 93 -1 O LEU A 89 N ARG A 156 SHEET 3 AA10 GLY A 108 LYS A 112 -1 O TYR A 109 N HIS A 92 SHEET 4 AA10 ASN A 176 ILE A 180 -1 O MET A 177 N LYS A 112 SHEET 5 AA10 ARG A 119 LEU A 124 1 O ARG A 119 N ASN A 176 SHEET 6 AA10 VAL A 225 SER A 231 1 O VAL A 225 N TRP A 120 SHEET 7 AA10 GLN A 258 ASP A 264 1 O GLN A 258 N LEU A 226 SHEET 8 AA10 VAL A 332 VAL A 335 1 O PHE A 333 N ALA A 263 SHEET 9 AA10 SER A 381 ALA A 383 1 N PHE A 382 O VAL A 334 SHEET 10 AA10 HIS A 435 VAL A 437 1 O LEU A 436 N ALA A 383 SHEET 1 AB 2 PHE A 339 ASP A 340 0 SHEET 2 AB 2 LEU A 387 SER A 388 1 N SER A 388 O PHE A 339 SHEET 1 AC 2 GLN A 401 VAL A 402 0 SHEET 2 AC 2 THR A 405 SER A 406 -1 O THR A 405 N VAL A 402 SSBOND 1 CYS A 101 CYS A 183 1555 1555 2.17 SSBOND 2 CYS A 130 CYS A 136 1555 1555 2.03 SSBOND 3 CYS A 279 CYS A 285 1555 1555 2.07 SSBOND 4 CYS A 306 CYS A 318 1555 1555 2.15 SSBOND 5 CYS A 386 CYS A 449 1555 1555 2.04 SSBOND 6 CYS A 413 CYS A 432 1555 1555 2.03 SSBOND 7 CYS A 440 CYS A 445 1555 1555 2.07 LINK ND2 ASN A 96 C1 NAG A1452 1555 1555 1.45 CRYST1 138.416 138.416 138.416 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007225 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007225 0.00000