PDB Short entry for 4V10 HEADER STRUCTURAL PROTEIN 19-SEP-14 4V10 TITLE SKELEMIN ASSOCIATION WITH ALPHA2B,BETA3 INTEGRIN: A STRUCTURAL MODEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOMESIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1208-1434; COMPND 5 SYNONYM: MYOMESIN FAMILY MEMBER 1, SKELEMIN, SK45; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 TISSUE: MUSCULES; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURAL PROTEIN, INTEGRIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.GORBATYUK,L.DESHMUKH,K.NGUYEN,O.VINOGRADOVA REVDAT 5 14-JUN-23 4V10 1 REMARK REVDAT 4 24-JAN-18 4V10 1 TITLE JRNL REMARK REVDAT 3 19-NOV-14 4V10 1 JRNL REVDAT 2 15-OCT-14 4V10 1 ATOM REVDAT 1 08-OCT-14 4V10 0 JRNL AUTH V.GORBATYUK,K.NGUYEN,N.P.PODOLNIKOVA,L.DESHMUKH,X.LIN, JRNL AUTH 2 T.P.UGAROVA,O.VINOGRADOVA JRNL TITL SKELEMIN ASSOCIATION WITH ALPHAIIBBETA3 INTEGRIN: A JRNL TITL 2 STRUCTURAL MODEL. JRNL REF BIOCHEMISTRY V. 53 6766 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 25224262 JRNL DOI 10.1021/BI500680S REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : G. MARIUS CLORE , GUILLERMO BERMEJO, JOHN REMARK 3 KUSZEWSKI, CHARLES D. SCHWIETERS, NICO TJ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 4V10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061802. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 20 MM KPI,1 MM DSS, 90% WATER/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HSQC; TRIPLE-RESONANCE BACKBONE REMARK 210 EXPERIMENTS; TOCSY; NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4, ARIA 2.3, REMARK 210 CCPNMR ANALYSIS 2.2, XPLOR-NIH REMARK 210 2.33, NMRPIPE 0, DANGLE 1.1 REMARK 210 METHOD USED : ARIA, XPLOR-NIH REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED SKELEMIN 4,5 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 128 H GLU A 130 1.47 REMARK 500 O ALA A 124 H GLN A 127 1.53 REMARK 500 H ASP A 224 OE2 GLU A 225 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 4 23.08 47.89 REMARK 500 1 HIS A 18 -156.93 -107.82 REMARK 500 1 LYS A 19 82.27 70.91 REMARK 500 1 PHE A 20 -46.89 -140.06 REMARK 500 1 PRO A 21 60.48 -52.13 REMARK 500 1 THR A 22 -166.58 -100.14 REMARK 500 1 THR A 25 -125.51 -79.73 REMARK 500 1 LYS A 26 50.58 -153.19 REMARK 500 1 LEU A 29 97.43 -59.69 REMARK 500 1 ALA A 30 -156.62 -129.56 REMARK 500 1 GLN A 44 -84.09 -102.01 REMARK 500 1 ALA A 45 98.31 88.64 REMARK 500 1 SER A 49 -89.77 -105.13 REMARK 500 1 SER A 50 -84.39 -115.12 REMARK 500 1 ALA A 52 90.82 4.90 REMARK 500 1 GLU A 60 17.44 89.39 REMARK 500 1 ARG A 75 31.00 7.28 REMARK 500 1 THR A 77 -22.69 84.02 REMARK 500 1 LYS A 86 -153.84 179.53 REMARK 500 1 LEU A 87 -72.71 -107.48 REMARK 500 1 GLN A 88 30.97 21.43 REMARK 500 1 ASP A 89 -133.19 -84.33 REMARK 500 1 GLU A 90 40.55 -99.47 REMARK 500 1 ASP A 91 -14.89 68.25 REMARK 500 1 SER A 108 117.66 -161.24 REMARK 500 1 LEU A 112 84.10 -151.35 REMARK 500 1 GLU A 125 -61.83 -19.95 REMARK 500 1 GLN A 129 30.48 -45.65 REMARK 500 1 GLU A 130 -2.07 -54.08 REMARK 500 1 ARG A 133 35.91 34.57 REMARK 500 1 LYS A 134 -82.87 168.48 REMARK 500 1 HIS A 138 115.97 76.38 REMARK 500 1 SER A 144 114.17 163.47 REMARK 500 1 ASN A 161 97.77 -24.31 REMARK 500 1 ILE A 162 128.07 -170.84 REMARK 500 1 LYS A 164 -79.45 -120.00 REMARK 500 1 GLU A 165 -92.21 -127.29 REMARK 500 1 HIS A 167 -99.11 -93.39 REMARK 500 1 ILE A 168 -164.70 -100.01 REMARK 500 1 LYS A 172 73.77 -177.93 REMARK 500 1 ASP A 173 72.49 51.67 REMARK 500 1 GLU A 174 -13.41 76.34 REMARK 500 1 GLU A 181 -88.13 -86.56 REMARK 500 1 PHE A 185 -79.72 71.85 REMARK 500 1 ILE A 194 84.50 -69.91 REMARK 500 1 GLU A 196 141.84 80.91 REMARK 500 1 LYS A 199 -9.64 -53.74 REMARK 500 1 ASP A 211 -106.57 -138.53 REMARK 500 1 ARG A 213 -135.59 -124.01 REMARK 500 1 ASP A 216 103.52 177.20 REMARK 500 REMARK 500 THIS ENTRY HAS 904 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25242 RELATED DB: BMRB DBREF 4V10 A 5 231 UNP Q62234 MYOM1_MOUSE 1208 1434 SEQADV 4V10 GLY A 1 UNP Q62234 EXPRESSION TAG SEQADV 4V10 SER A 2 UNP Q62234 EXPRESSION TAG SEQADV 4V10 HIS A 3 UNP Q62234 EXPRESSION TAG SEQADV 4V10 MET A 4 UNP Q62234 EXPRESSION TAG SEQADV 4V10 SER A 151 UNP Q62234 CYS 1354 ENGINEERED MUTATION SEQRES 1 A 231 GLY SER HIS MET GLU GLU GLU MET LYS ARG LEU LEU ALA SEQRES 2 A 231 LEU SER GLN GLU HIS LYS PHE PRO THR VAL PRO THR LYS SEQRES 3 A 231 SER GLU LEU ALA VAL GLU ILE LEU GLU LYS GLY GLN VAL SEQRES 4 A 231 ARG PHE TRP MET GLN ALA GLU LYS LEU SER SER ASN ALA SEQRES 5 A 231 LYS VAL SER TYR ILE PHE ASN GLU LYS GLU ILE PHE GLU SEQRES 6 A 231 GLY PRO LYS TYR LYS MET HIS ILE ASP ARG ASN THR GLY SEQRES 7 A 231 ILE ILE GLU MET PHE MET GLU LYS LEU GLN ASP GLU ASP SEQRES 8 A 231 GLU GLY THR TYR THR PHE GLN ILE GLN ASP GLY LYS ALA SEQRES 9 A 231 THR GLY HIS SER THR LEU VAL LEU ILE GLY ASP VAL TYR SEQRES 10 A 231 LYS LYS LEU GLN LYS GLU ALA GLU PHE GLN ARG GLN GLU SEQRES 11 A 231 TRP ILE ARG LYS GLN GLY PRO HIS PHE ALA GLU TYR LEU SEQRES 12 A 231 SER TRP GLU VAL THR GLY GLU SER ASN VAL LEU LEU LYS SEQRES 13 A 231 CYS LYS VAL ALA ASN ILE LYS LYS GLU THR HIS ILE VAL SEQRES 14 A 231 TRP TYR LYS ASP GLU ARG GLU ILE SER VAL ASP GLU LYS SEQRES 15 A 231 HIS ASP PHE LYS ASP GLY ILE CYS THR LEU LEU ILE THR SEQRES 16 A 231 GLU PHE SER LYS LYS ASP ALA GLY PHE TYR GLU VAL ILE SEQRES 17 A 231 LEU LYS ASP ASP ARG GLY LYS ASP LYS SER ARG LEU LYS SEQRES 18 A 231 LEU VAL ASP GLU ALA PHE GLN ASP LEU MET HELIX 1 1 MET A 4 GLN A 16 1 13 HELIX 2 2 ILE A 113 GLN A 129 1 17 HELIX 3 3 GLU A 130 ARG A 133 5 4 HELIX 4 4 ASP A 224 ASP A 229 1 6 SHEET 1 AA 4 ALA A 30 VAL A 31 0 SHEET 2 AA 4 VAL A 39 MET A 43 -1 O TRP A 42 N ALA A 30 SHEET 3 AA 4 ILE A 80 MET A 84 -1 O ILE A 80 N MET A 43 SHEET 4 AA 4 LYS A 70 ILE A 73 -1 O LYS A 70 N PHE A 83 SHEET 1 AB 4 LYS A 61 GLU A 62 0 SHEET 2 AB 4 LYS A 53 PHE A 58 -1 O PHE A 58 N LYS A 61 SHEET 3 AB 4 THR A 94 ASP A 101 -1 N THR A 96 O ILE A 57 SHEET 4 AB 4 ALA A 104 VAL A 111 -1 O ALA A 104 N ASP A 101 SHEET 1 AC 2 VAL A 153 LYS A 156 0 SHEET 2 AC 2 THR A 191 ILE A 194 -1 N LEU A 192 O LEU A 155 SHEET 1 AD 3 TRP A 170 TYR A 171 0 SHEET 2 AD 3 GLY A 203 VAL A 207 -1 O GLU A 206 N TYR A 171 SHEET 3 AD 3 LEU A 220 LEU A 222 -1 O LEU A 220 N TYR A 205 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000