PDB Short entry for 4V2B HEADER APOPTOSIS 08-OCT-14 4V2B TITLE RAT UNC5D IG DOMAIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN UNC5D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: IG DOMAIN 1, RESIDUES 1-161; COMPND 5 SYNONYM: RAT UNC5D; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS APOPTOSIS, UNCOORDINATED-5, IG DOMAIN, NETRIN RECEPTOR, FLRT EXPDTA X-RAY DIFFRACTION AUTHOR E.SEIRADAKE,D.DEL TORO,D.NAGEL,F.COP,R.HAERTL,T.RUFF,G.SEYIT-BREMER, AUTHOR 2 K.HARLOS,E.C.BORDER,A.ACKER-PALMER,E.Y.JONES,R.KLEIN REVDAT 2 22-JUL-15 4V2B 1 JRNL REVDAT 1 05-NOV-14 4V2B 0 JRNL AUTH E.SEIRADAKE,D.DEL TORO,D.NAGEL,F.COP,R.HAERTL,T.RUFF, JRNL AUTH 2 G.SEYIT-BREMER,K.HARLOS,E.C.BORDER,A.ACKER-PALMER,E.Y.JONES, JRNL AUTH 3 R.KLEIN JRNL TITL FLRT STRUCTURE: BALANCING REPULSION AND CELL ADHESION IN JRNL TITL 2 CORTICAL AND VASCULAR DEVELOPMENT JRNL REF NEURON V. 84 370 2014 JRNL REFN ISSN 0896-6273 JRNL PMID 25374360 JRNL DOI 10.1016/J.NEURON.2014.10.008 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.90 REMARK 3 NUMBER OF REFLECTIONS : 21085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.3146 REMARK 3 R VALUE (WORKING SET) : 0.3140 REMARK 3 FREE R VALUE : 0.3256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.96 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.90 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1987 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3400 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1877 REMARK 3 BIN R VALUE (WORKING SET) : 0.3385 REMARK 3 BIN FREE R VALUE : 0.3669 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.54 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 110 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.8584 REMARK 3 B22 (A**2) : -13.8584 REMARK 3 B33 (A**2) : 27.7167 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.815 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.224 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.189 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.222 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.189 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.8847 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.8783 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1780 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 2412 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 615 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 47 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 254 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1780 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 224 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1756 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 0.86 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.65 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.45 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -6.0959 41.5472 3.0211 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 3.0744 13.7430 11.0200 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4V2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-14. REMARK 100 THE PDBE ID CODE IS EBI-61942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : DIAMOND; DIAMOND REMARK 200 BEAMLINE : I24; I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006900; 1.071400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : XIA2, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 410812 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.00 REMARK 200 RESOLUTION RANGE LOW (A) : 61.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NONE REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.63 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 19.3 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.67 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 142.67333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.33667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.00500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.66833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 178.34167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 142.67333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.33667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.66833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.00500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 178.34167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 ARG A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 12 REMARK 465 ARG A 13 REMARK 465 TRP A 14 REMARK 465 TRP A 15 REMARK 465 LEU A 16 REMARK 465 PRO A 17 REMARK 465 TRP A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 CYS A 22 REMARK 465 PHE A 23 REMARK 465 TRP A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 27 REMARK 465 ALA A 28 REMARK 465 GLU A 29 REMARK 465 ALA A 30 REMARK 465 ALA A 31 REMARK 465 ARG A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 ASP A 35 REMARK 465 SER A 36 REMARK 465 GLY A 37 REMARK 465 GLU A 38 REMARK 465 VAL A 39 REMARK 465 LEU A 40 REMARK 465 PRO A 41 REMARK 465 ASP A 42 REMARK 465 SER A 43 REMARK 465 ILE A 44 REMARK 465 PRO A 45 REMARK 465 SER A 46 REMARK 465 GLU A 102A REMARK 465 SER A 102B REMARK 465 SER A 102C REMARK 465 GLY A 102D REMARK 465 LYS A 153 REMARK 465 ASN A 154 REMARK 465 PHE A 155 REMARK 465 GLU A 156 REMARK 465 GLN A 157 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 ASP B 7 REMARK 465 ARG B 8 REMARK 465 SER B 9 REMARK 465 ARG B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 ARG B 13 REMARK 465 TRP B 14 REMARK 465 TRP B 15 REMARK 465 LEU B 16 REMARK 465 PRO B 17 REMARK 465 TRP B 18 REMARK 465 LEU B 19 REMARK 465 GLY B 20 REMARK 465 LEU B 21 REMARK 465 CYS B 22 REMARK 465 PHE B 23 REMARK 465 TRP B 24 REMARK 465 ALA B 25 REMARK 465 ALA B 26 REMARK 465 GLY B 27 REMARK 465 ALA B 28 REMARK 465 GLU B 29 REMARK 465 ALA B 30 REMARK 465 ALA B 31 REMARK 465 ARG B 32 REMARK 465 GLY B 33 REMARK 465 ALA B 34 REMARK 465 ASP B 35 REMARK 465 SER B 36 REMARK 465 GLY B 37 REMARK 465 GLU B 38 REMARK 465 VAL B 39 REMARK 465 LEU B 40 REMARK 465 PRO B 41 REMARK 465 ASP B 42 REMARK 465 SER B 43 REMARK 465 ILE B 44 REMARK 465 PRO B 45 REMARK 465 SER B 46 REMARK 465 ALA B 47 REMARK 465 PRO B 48 REMARK 465 GLY B 49 REMARK 465 ARG B 156 REMARK 465 LYS B 157 REMARK 465 ASN B 158 REMARK 465 PHE B 159 REMARK 465 GLU B 160 REMARK 465 GLN B 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 66 -6.67 67.55 REMARK 500 SER B 104 -70.03 -75.54 REMARK 500 HIS B 125 77.53 -119.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V2A RELATED DB: PDB REMARK 900 HUMAN UNC5A ECTODOMAIN REMARK 900 RELATED ID: 4V2C RELATED DB: PDB REMARK 900 MOUSE FLRT2 LRR DOMAIN IN COMPLEX WITH RAT UNC5D IG1 REMARK 900 DOMAIN REMARK 900 RELATED ID: 4V2D RELATED DB: PDB REMARK 900 FLRT2 LRR DOMAIN REMARK 900 RELATED ID: 4V2E RELATED DB: PDB REMARK 900 FLRT3 LRR DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINUS IS PROTEOLYTICALLY CLEAVED DURING EXPRESSION. REMARK 999 CONTAINS C-TERMINAL HIS TAG. DBREF 4V2B A 1 157 UNP F1LW30 F1LW30_RAT 1 161 DBREF 4V2B B 1 161 UNP F1LW30 F1LW30_RAT 1 161 SEQRES 1 A 161 MET GLY THR GLY ALA ALA ASP ARG SER ARG GLY ALA ARG SEQRES 2 A 161 TRP TRP LEU PRO TRP LEU GLY LEU CYS PHE TRP ALA ALA SEQRES 3 A 161 GLY ALA GLU ALA ALA ARG GLY ALA ASP SER GLY GLU VAL SEQRES 4 A 161 LEU PRO ASP SER ILE PRO SER ALA PRO GLY THR LEU PRO SEQRES 5 A 161 HIS PHE ILE GLU GLU PRO GLU ASP ALA TYR ILE ILE LYS SEQRES 6 A 161 SER ASN PRO ILE ALA LEU ARG CYS LYS ALA ARG PRO ALA SEQRES 7 A 161 MET GLN ILE PHE PHE LYS CYS ASN GLY GLU TRP VAL HIS SEQRES 8 A 161 GLN ASN GLU HIS VAL SER GLU GLU SER LEU ASP GLU SER SEQRES 9 A 161 SER GLY LEU LYS VAL ARG GLU VAL PHE ILE ASN VAL THR SEQRES 10 A 161 ARG GLN GLN VAL GLU ASP PHE HIS GLY PRO GLU ASP TYR SEQRES 11 A 161 TRP CYS GLN CYS VAL ALA TRP SER HIS LEU GLY THR SER SEQRES 12 A 161 LYS SER ARG LYS ALA SER VAL ARG ILE ALA TYR LEU ARG SEQRES 13 A 161 LYS ASN PHE GLU GLN SEQRES 1 B 161 MET GLY THR GLY ALA ALA ASP ARG SER ARG GLY ALA ARG SEQRES 2 B 161 TRP TRP LEU PRO TRP LEU GLY LEU CYS PHE TRP ALA ALA SEQRES 3 B 161 GLY ALA GLU ALA ALA ARG GLY ALA ASP SER GLY GLU VAL SEQRES 4 B 161 LEU PRO ASP SER ILE PRO SER ALA PRO GLY THR LEU PRO SEQRES 5 B 161 HIS PHE ILE GLU GLU PRO GLU ASP ALA TYR ILE ILE LYS SEQRES 6 B 161 SER ASN PRO ILE ALA LEU ARG CYS LYS ALA ARG PRO ALA SEQRES 7 B 161 MET GLN ILE PHE PHE LYS CYS ASN GLY GLU TRP VAL HIS SEQRES 8 B 161 GLN ASN GLU HIS VAL SER GLU GLU SER LEU ASP GLU SER SEQRES 9 B 161 SER GLY LEU LYS VAL ARG GLU VAL PHE ILE ASN VAL THR SEQRES 10 B 161 ARG GLN GLN VAL GLU ASP PHE HIS GLY PRO GLU ASP TYR SEQRES 11 B 161 TRP CYS GLN CYS VAL ALA TRP SER HIS LEU GLY THR SER SEQRES 12 B 161 LYS SER ARG LYS ALA SER VAL ARG ILE ALA TYR LEU ARG SEQRES 13 B 161 LYS ASN PHE GLU GLN FORMUL 3 HOH *4(H2 O) HELIX 1 1 HIS A 91 ASN A 93 5 3 HELIX 2 2 THR A 113 PHE A 120 1 8 HELIX 3 3 HIS B 91 ASN B 93 5 3 HELIX 4 4 THR B 117 PHE B 124 1 8 SHEET 1 AA 4 HIS A 53 GLU A 56 0 SHEET 2 AA 4 ILE A 69 ARG A 76 -1 O LYS A 74 N ILE A 55 SHEET 3 AA 4 LYS A 104 VAL A 112 -1 O ARG A 106 N ALA A 75 SHEET 4 AA 4 HIS A 95 LEU A 101 -1 O VAL A 96 N PHE A 109 SHEET 1 AB 2 ALA A 61 ILE A 63 0 SHEET 2 AB 2 GLY A 137 ILE A 148 1 O SER A 145 N ALA A 61 SHEET 1 AC 8 GLU A 88 TRP A 89 0 SHEET 2 AC 8 GLN A 80 CYS A 85 -1 O CYS A 85 N GLU A 88 SHEET 3 AC 8 TRP A 127 TRP A 133 -1 O GLN A 129 N LYS A 84 SHEET 4 AC 8 GLY A 137 ILE A 148 -1 O SER A 139 N ALA A 132 SHEET 5 AC 8 HIS B 95 LEU B 101 1 O SER B 97 N THR A 138 SHEET 6 AC 8 LYS B 108 VAL B 116 -1 O VAL B 109 N SER B 100 SHEET 7 AC 8 ILE B 69 ARG B 76 -1 O ILE B 69 N VAL B 116 SHEET 8 AC 8 HIS B 53 GLU B 56 -1 O HIS B 53 N ARG B 76 SHEET 1 AD 5 GLU A 88 TRP A 89 0 SHEET 2 AD 5 GLN A 80 CYS A 85 -1 O CYS A 85 N GLU A 88 SHEET 3 AD 5 TRP A 127 TRP A 133 -1 O GLN A 129 N LYS A 84 SHEET 4 AD 5 GLY A 137 ILE A 148 -1 O SER A 139 N ALA A 132 SHEET 5 AD 5 ALA A 61 ILE A 63 1 O ALA A 61 N ARG A 147 SHEET 1 BA 4 ALA B 61 ILE B 63 0 SHEET 2 BA 4 ALA B 148 ILE B 152 1 O SER B 149 N ALA B 61 SHEET 3 BA 4 TRP B 131 TRP B 137 -1 O CYS B 132 N ALA B 148 SHEET 4 BA 4 THR B 142 LYS B 144 1 O SER B 143 N ALA B 136 SHEET 1 BB 5 ALA B 61 ILE B 63 0 SHEET 2 BB 5 ALA B 148 ILE B 152 1 O SER B 149 N ALA B 61 SHEET 3 BB 5 TRP B 131 TRP B 137 -1 O CYS B 132 N ALA B 148 SHEET 4 BB 5 GLN B 80 CYS B 85 -1 O GLN B 80 N TRP B 137 SHEET 5 BB 5 GLU B 88 TRP B 89 -1 O GLU B 88 N CYS B 85 SHEET 1 BC 2 THR B 142 LYS B 144 0 SHEET 2 BC 2 TRP B 131 TRP B 137 1 O ALA B 136 N SER B 143 SSBOND 1 CYS A 73 CYS A 130 1555 1555 2.03 SSBOND 2 CYS A 85 CYS A 128 1555 1555 2.03 SSBOND 3 CYS B 73 CYS B 134 1555 1555 2.03 SSBOND 4 CYS B 85 CYS B 132 1555 1555 2.03 CISPEP 1 ALA A 47 PRO A 48 0 3.48 CISPEP 2 ILE A 64 LYS A 65 0 -3.19 CISPEP 3 ARG A 76 PRO A 77 0 -1.42 CISPEP 4 ARG B 76 PRO B 77 0 -2.24 CRYST1 70.110 70.110 214.010 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014263 0.008235 0.000000 0.00000 SCALE2 0.000000 0.016470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004673 0.00000