PDB Short entry for 4WND HEADER SIGNALING PROTEIN/PROTEIN BINDING 11-OCT-14 4WND TITLE CRYSTAL STRUCTURE OF THE TPR DOMAIN OF LGN IN COMPLEX WITH TITLE 2 FRMPD4/PRESO1 AT 1.5 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: G-PROTEIN-SIGNALING MODULATOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL TPR DOMAIN, UNP RESIDUES 20-421; COMPND 5 SYNONYM: MOSAIC PROTEIN LGN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FERM AND PDZ DOMAIN-CONTAINING PROTEIN 4; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: FRMPD4-L, UNP RESIDUES 978-1025; COMPND 11 SYNONYM: PDZ DOMAIN-CONTAINING PROTEIN 10,PSD-95-INTERACTING COMPND 12 REGULATOR OF SPINE MORPHOGENESIS,PRESO; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GPSM2, LGN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: FRMPD4, KIAA0316, PDZD10, PDZK10; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS TETRATRICOPEPTIDE REPEAT, TPR, CELL POLARITY, CYTOPLASM AND CELL KEYWDS 2 CORTEX, SIGNALING PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.TAKAYANAGI,S.YUZAWA,H.SUMIMOTO REVDAT 3 08-NOV-23 4WND 1 REMARK REVDAT 2 05-FEB-20 4WND 1 REMARK REVDAT 1 16-SEP-15 4WND 0 JRNL AUTH H.TAKAYANAGI,S.YUZAWA,H.SUMIMOTO JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF THE SCAFFOLD PROTEIN JRNL TITL 2 FRMPD4/PRESO1 BY THE TPR DOMAIN OF THE ADAPTOR PROTEIN LGN JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 175 2015 JRNL REFN ESSN 2053-230X JRNL PMID 25664792 JRNL DOI 10.1107/S2053230X14028143 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 58188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3108 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4005 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2767 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -1.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.189 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3118 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2920 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4215 ; 1.105 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6739 ; 0.698 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 4.727 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;33.874 ;24.583 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;13.749 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.201 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3638 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 756 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61319 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : 0.03700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.724 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0.05 REMARK 200 STARTING MODEL: 4WNE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BISTRISPROPANE (PH 7.5), 0.2 M REMARK 280 POTASSIUM THIOCYANATE, 20% PEG 3350, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.39300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 PRO A 155 REMARK 465 GLY A 156 REMARK 465 PRO A 157 REMARK 465 GLN A 158 REMARK 465 ASP A 159 REMARK 465 VAL A 160 REMARK 465 GLY A 161 REMARK 465 GLU A 162 REMARK 465 ASP A 350 REMARK 465 LYS A 351 REMARK 465 SER A 352 REMARK 465 GLY A 353 REMARK 465 GLU A 354 REMARK 465 LEU A 355 REMARK 465 THR A 356 REMARK 465 ALA A 357 REMARK 465 ARG A 358 REMARK 465 LEU A 359 REMARK 465 ASN A 360 REMARK 465 LEU A 361 REMARK 465 SER A 362 REMARK 465 ASP A 363 REMARK 465 LEU A 364 REMARK 465 GLN A 365 REMARK 465 MET A 366 REMARK 465 VAL A 367 REMARK 465 LEU A 368 REMARK 465 GLY A 369 REMARK 465 LEU A 370 REMARK 465 SER A 371 REMARK 465 TYR A 372 REMARK 465 SER A 373 REMARK 465 THR A 374 REMARK 465 ASN A 375 REMARK 465 ASN A 376 REMARK 465 SER A 377 REMARK 465 ILE A 378 REMARK 465 MET A 379 REMARK 465 SER A 380 REMARK 465 GLU A 381 REMARK 465 ASN A 382 REMARK 465 THR A 383 REMARK 465 GLU A 384 REMARK 465 ILE A 385 REMARK 465 ASP A 386 REMARK 465 SER A 387 REMARK 465 SER A 388 REMARK 465 LEU A 389 REMARK 465 ASN A 390 REMARK 465 GLY A 391 REMARK 465 VAL A 392 REMARK 465 ARG A 393 REMARK 465 PRO A 394 REMARK 465 LYS A 395 REMARK 465 LEU A 396 REMARK 465 GLY A 397 REMARK 465 ARG A 398 REMARK 465 ARG A 399 REMARK 465 HIS A 400 REMARK 465 SER A 401 REMARK 465 MET A 402 REMARK 465 GLU A 403 REMARK 465 ASN A 404 REMARK 465 MET A 405 REMARK 465 GLU A 406 REMARK 465 LEU A 407 REMARK 465 MET A 408 REMARK 465 LYS A 409 REMARK 465 LEU A 410 REMARK 465 THR A 411 REMARK 465 PRO A 412 REMARK 465 GLU A 413 REMARK 465 LYS A 414 REMARK 465 GLY B 973 REMARK 465 PRO B 974 REMARK 465 LEU B 975 REMARK 465 GLY B 976 REMARK 465 SER B 977 REMARK 465 ASP B 978 REMARK 465 LEU B 979 REMARK 465 PRO B 980 REMARK 465 PRO B 981 REMARK 465 LYS B 982 REMARK 465 VAL B 983 REMARK 465 VAL B 984 REMARK 465 PRO B 985 REMARK 465 SER B 986 REMARK 465 LYS B 987 REMARK 465 LEU B 1014 REMARK 465 HIS B 1015 REMARK 465 MET B 1016 REMARK 465 GLY B 1017 REMARK 465 SER B 1018 REMARK 465 VAL B 1019 REMARK 465 ALA B 1020 REMARK 465 TYR B 1021 REMARK 465 SER B 1022 REMARK 465 CYS B 1023 REMARK 465 THR B 1024 REMARK 465 SER B 1025 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 13 SD CE REMARK 470 LYS A 29 CD CE NZ REMARK 470 LYS A 73 NZ REMARK 470 GLU A 165 CD OE1 OE2 REMARK 470 ARG A 168 NE CZ NH1 NH2 REMARK 470 LYS A 269 CE NZ REMARK 470 GLN B 988 CG CD OE1 NE2 REMARK 470 LYS B1013 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 73.85 -113.95 REMARK 500 GLU A 250 73.38 -100.41 REMARK 500 GLU A 250 74.64 -101.89 REMARK 500 VAL A 348 45.52 -94.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 519 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SF4 RELATED DB: PDB REMARK 900 3SF4 CONTAINS THE SAME PROTEIN COMPLEXED WITH MINSC. REMARK 900 RELATED ID: 4WNE RELATED DB: PDB REMARK 900 RELATED ID: 4WNF RELATED DB: PDB REMARK 900 RELATED ID: 4WNG RELATED DB: PDB DBREF 4WND A 13 414 UNP P81274 GPSM2_HUMAN 20 421 DBREF 4WND B 978 1025 UNP Q14CM0 FRPD4_HUMAN 978 1025 SEQADV 4WND GLY A 9 UNP P81274 EXPRESSION TAG SEQADV 4WND PRO A 10 UNP P81274 EXPRESSION TAG SEQADV 4WND GLY A 11 UNP P81274 EXPRESSION TAG SEQADV 4WND SER A 12 UNP P81274 EXPRESSION TAG SEQADV 4WND GLY B 973 UNP Q14CM0 EXPRESSION TAG SEQADV 4WND PRO B 974 UNP Q14CM0 EXPRESSION TAG SEQADV 4WND LEU B 975 UNP Q14CM0 EXPRESSION TAG SEQADV 4WND GLY B 976 UNP Q14CM0 EXPRESSION TAG SEQADV 4WND SER B 977 UNP Q14CM0 EXPRESSION TAG SEQRES 1 A 406 GLY PRO GLY SER MET GLU ALA SER CYS LEU GLU LEU ALA SEQRES 2 A 406 LEU GLU GLY GLU ARG LEU CYS LYS SER GLY ASP CYS ARG SEQRES 3 A 406 ALA GLY VAL SER PHE PHE GLU ALA ALA VAL GLN VAL GLY SEQRES 4 A 406 THR GLU ASP LEU LYS THR LEU SER ALA ILE TYR SER GLN SEQRES 5 A 406 LEU GLY ASN ALA TYR PHE TYR LEU HIS ASP TYR ALA LYS SEQRES 6 A 406 ALA LEU GLU TYR HIS HIS HIS ASP LEU THR LEU ALA ARG SEQRES 7 A 406 THR ILE GLY ASP GLN LEU GLY GLU ALA LYS ALA SER GLY SEQRES 8 A 406 ASN LEU GLY ASN THR LEU LYS VAL LEU GLY ASN PHE ASP SEQRES 9 A 406 GLU ALA ILE VAL CYS CYS GLN ARG HIS LEU ASP ILE SER SEQRES 10 A 406 ARG GLU LEU ASN ASP LYS VAL GLY GLU ALA ARG ALA LEU SEQRES 11 A 406 TYR ASN LEU GLY ASN VAL TYR HIS ALA LYS GLY LYS SER SEQRES 12 A 406 PHE GLY CYS PRO GLY PRO GLN ASP VAL GLY GLU PHE PRO SEQRES 13 A 406 GLU GLU VAL ARG ASP ALA LEU GLN ALA ALA VAL ASP PHE SEQRES 14 A 406 TYR GLU GLU ASN LEU SER LEU VAL THR ALA LEU GLY ASP SEQRES 15 A 406 ARG ALA ALA GLN GLY ARG ALA PHE GLY ASN LEU GLY ASN SEQRES 16 A 406 THR HIS TYR LEU LEU GLY ASN PHE ARG ASP ALA VAL ILE SEQRES 17 A 406 ALA HIS GLU GLN ARG LEU LEU ILE ALA LYS GLU PHE GLY SEQRES 18 A 406 ASP LYS ALA ALA GLU ARG ARG ALA TYR SER ASN LEU GLY SEQRES 19 A 406 ASN ALA TYR ILE PHE LEU GLY GLU PHE GLU THR ALA SER SEQRES 20 A 406 GLU TYR TYR LYS LYS THR LEU LEU LEU ALA ARG GLN LEU SEQRES 21 A 406 LYS ASP ARG ALA VAL GLU ALA GLN SER CYS TYR SER LEU SEQRES 22 A 406 GLY ASN THR TYR THR LEU LEU GLN ASP TYR GLU LYS ALA SEQRES 23 A 406 ILE ASP TYR HIS LEU LYS HIS LEU ALA ILE ALA GLN GLU SEQRES 24 A 406 LEU ASN ASP ARG ILE GLY GLU GLY ARG ALA CYS TRP SER SEQRES 25 A 406 LEU GLY ASN ALA TYR THR ALA LEU GLY ASN HIS ASP GLN SEQRES 26 A 406 ALA MET HIS PHE ALA GLU LYS HIS LEU GLU ILE SER ARG SEQRES 27 A 406 GLU VAL GLY ASP LYS SER GLY GLU LEU THR ALA ARG LEU SEQRES 28 A 406 ASN LEU SER ASP LEU GLN MET VAL LEU GLY LEU SER TYR SEQRES 29 A 406 SER THR ASN ASN SER ILE MET SER GLU ASN THR GLU ILE SEQRES 30 A 406 ASP SER SER LEU ASN GLY VAL ARG PRO LYS LEU GLY ARG SEQRES 31 A 406 ARG HIS SER MET GLU ASN MET GLU LEU MET LYS LEU THR SEQRES 32 A 406 PRO GLU LYS SEQRES 1 B 53 GLY PRO LEU GLY SER ASP LEU PRO PRO LYS VAL VAL PRO SEQRES 2 B 53 SER LYS GLN LEU LEU HIS SER ASP HIS MET GLU MET GLU SEQRES 3 B 53 PRO GLU THR MET GLU THR LYS SER VAL THR ASP TYR PHE SEQRES 4 B 53 SER LYS LEU HIS MET GLY SER VAL ALA TYR SER CYS THR SEQRES 5 B 53 SER HET SCN A 501 3 HET SCN A 502 3 HET SCN A 503 3 HET SCN A 504 3 HET SCN A 505 3 HET SCN A 506 3 HET SCN A 507 3 HET PEG A 508 7 HET PEG A 509 7 HET PEG A 510 7 HET PEG A 511 7 HET PEG A 512 7 HET PGE A 513 10 HET EDO A 514 4 HET EDO A 515 4 HET EDO A 516 4 HET EDO A 517 4 HET EDO A 518 4 HET EDO A 519 4 HETNAM SCN THIOCYANATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SCN 7(C N S 1-) FORMUL 10 PEG 5(C4 H10 O3) FORMUL 15 PGE C6 H14 O4 FORMUL 16 EDO 6(C2 H6 O2) FORMUL 22 HOH *298(H2 O) HELIX 1 AA1 SER A 16 SER A 30 1 15 HELIX 2 AA2 ASP A 32 GLY A 47 1 16 HELIX 3 AA3 ASP A 50 LEU A 68 1 19 HELIX 4 AA4 ASP A 70 ILE A 88 1 19 HELIX 5 AA5 ASP A 90 GLY A 109 1 20 HELIX 6 AA6 ASN A 110 LEU A 128 1 19 HELIX 7 AA7 ASP A 130 PHE A 152 1 23 HELIX 8 AA8 PRO A 164 LEU A 188 1 25 HELIX 9 AA9 ASP A 190 GLY A 209 1 20 HELIX 10 AB1 ASN A 210 PHE A 228 1 19 HELIX 11 AB2 ASP A 230 LEU A 248 1 19 HELIX 12 AB3 GLU A 250 ARG A 266 1 17 HELIX 13 AB4 ASP A 270 LEU A 288 1 19 HELIX 14 AB5 ASP A 290 LEU A 308 1 19 HELIX 15 AB6 ASP A 310 LEU A 328 1 19 HELIX 16 AB7 ASN A 330 VAL A 348 1 19 HELIX 17 AB8 SER B 1006 TYR B 1010 5 5 SITE 1 AC1 3 LEU A 82 SER A 98 HOH A 628 SITE 1 AC2 3 GLY A 109 ASN A 110 GLU A 113 SITE 1 AC3 5 GLU A 179 PHE A 198 LEU A 201 PGE A 513 SITE 2 AC3 5 HOH A 608 SITE 1 AC4 5 LYS A 231 ALA A 232 ARG A 235 LEU A 268 SITE 2 AC4 5 HOH A 669 SITE 1 AC5 5 ARG A 266 LEU A 268 ARG A 271 GLU A 274 SITE 2 AC5 5 HOH A 746 SITE 1 AC6 3 GLN A 119 ARG A 126 HOH A 771 SITE 1 AC7 3 GLU A 25 ARG A 26 HOH A 647 SITE 1 AC8 6 LYS A 106 ASN A 143 HIS A 146 LYS A 150 SITE 2 AC8 6 HOH A 768 GLU B1000 SITE 1 AC9 2 SER A 151 PHE A 152 SITE 1 AD1 2 HIS A 341 LEU B 990 SITE 1 AD2 7 TYR A 145 LYS A 148 ASP A 169 ALA A 170 SITE 2 AD2 7 HOH A 606 HOH A 744 HOH A 749 SITE 1 AD3 7 ALA A 275 GLN A 276 TYR A 279 HIS A 301 SITE 2 AD3 7 ASP A 310 ARG A 316 HOH A 802 SITE 1 AD4 12 ARG A 34 ALA A 35 SER A 38 PHE A 39 SITE 2 AD4 12 THR A 186 GLN A 194 PHE A 198 GLN A 220 SITE 3 AD4 12 SCN A 503 HOH A 619 HOH A 645 HOH A 678 SITE 1 AD5 4 TYR A 206 LEU A 207 PHE A 211 PHE A 247 SITE 1 AD6 5 HIS A 79 HIS A 80 THR A 83 HOH A 620 SITE 2 AD6 5 HOH A 735 SITE 1 AD7 2 GLU A 256 LYS A 260 SITE 1 AD8 3 LYS A 148 PHE A 152 HOH A 749 SITE 1 AD9 4 GLN A 289 ASP A 290 TYR A 291 GLU A 292 SITE 1 AE1 5 GLU A 113 VAL A 116 CYS A 117 HOH A 615 SITE 2 AE1 5 HOH A 628 CRYST1 45.487 64.786 69.118 90.00 102.33 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021984 0.000000 0.004807 0.00000 SCALE2 0.000000 0.015435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014810 0.00000