PDB Short entry for 4WO1 HEADER SIGNALING PROTEIN 15-OCT-14 4WO1 TITLE CRYSTAL STRUCTURE OF THE DAP12 TRANSMEMBRANE DOMAIN IN LIPID CUBIC TITLE 2 PHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYRO PROTEIN TYROSINE KINASE-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 35-67; COMPND 5 SYNONYM: DNAX-ACTIVATION PROTEIN 12,KILLER-ACTIVATING RECEPTOR- COMPND 6 ASSOCIATED PROTEIN,KAR-ASSOCIATED PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TYROBP, DAP12, KARAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-HELIX TRANSMEMBRANE SIGNALING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.CALL,M.E.CALL,K.KNOBLICH REVDAT 5 27-SEP-23 4WO1 1 LINK REVDAT 4 01-JAN-20 4WO1 1 REMARK REVDAT 3 27-SEP-17 4WO1 1 SOURCE REMARK REVDAT 2 10-JUN-15 4WO1 1 JRNL REVDAT 1 03-JUN-15 4WO1 0 JRNL AUTH K.KNOBLICH,S.PARK,M.LUTFI,L.VAN 'T HAG,C.E.CONN, JRNL AUTH 2 S.A.SEABROOK,J.NEWMAN,P.E.CZABOTAR,W.IM,M.E.CALL,M.J.CALL JRNL TITL TRANSMEMBRANE COMPLEXES OF DAP12 CRYSTALLIZED IN LIPID JRNL TITL 2 MEMBRANES PROVIDE INSIGHTS INTO CONTROL OF OLIGOMERIZATION JRNL TITL 3 IN IMMUNORECEPTOR ASSEMBLY. JRNL REF CELL REP V. 11 1184 2015 JRNL REFN ESSN 2211-1247 JRNL PMID 25981043 JRNL DOI 10.1016/J.CELREP.2015.04.045 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 6310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.760 REMARK 3 FREE R VALUE TEST SET COUNT : 616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1254 - 3.3962 0.94 1462 156 0.2233 0.2947 REMARK 3 2 3.3962 - 2.6960 0.99 1475 155 0.2398 0.2929 REMARK 3 3 2.6960 - 2.3553 0.99 1457 165 0.2331 0.2794 REMARK 3 4 2.3553 - 2.1400 0.90 1300 140 0.2455 0.3264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1003 REMARK 3 ANGLE : 0.982 1343 REMARK 3 CHIRALITY : 0.031 186 REMARK 3 PLANARITY : 0.004 153 REMARK 3 DIHEDRAL : 17.335 358 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4712 4.0017 -24.7847 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: -0.0315 REMARK 3 T33: 0.2245 T12: -0.0052 REMARK 3 T13: 0.0349 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.5505 L22: 1.1521 REMARK 3 L33: 5.6678 L12: 0.1928 REMARK 3 L13: -1.0049 L23: -0.7563 REMARK 3 S TENSOR REMARK 3 S11: -0.1131 S12: 0.2533 S13: -0.1968 REMARK 3 S21: 0.0722 S22: -0.0522 S23: 0.1870 REMARK 3 S31: 0.3628 S32: -0.1967 S33: 0.1651 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6280 6.5168 -4.1275 REMARK 3 T TENSOR REMARK 3 T11: 0.7160 T22: 0.5310 REMARK 3 T33: 0.0035 T12: -0.1732 REMARK 3 T13: 0.1321 T23: 0.2152 REMARK 3 L TENSOR REMARK 3 L11: 2.2073 L22: 1.0329 REMARK 3 L33: 0.4367 L12: -0.0377 REMARK 3 L13: 0.8098 L23: 0.3656 REMARK 3 S TENSOR REMARK 3 S11: -0.3654 S12: -0.9377 S13: -0.4955 REMARK 3 S21: 0.5792 S22: 0.0410 S23: 0.1305 REMARK 3 S31: 0.4538 S32: 0.8114 S33: 0.4716 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3928 13.8845 -26.8809 REMARK 3 T TENSOR REMARK 3 T11: 0.2570 T22: 0.1345 REMARK 3 T33: 0.2371 T12: 0.0205 REMARK 3 T13: -0.0960 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 1.0340 L22: 1.5818 REMARK 3 L33: 5.2986 L12: 0.5615 REMARK 3 L13: -1.6333 L23: -2.4118 REMARK 3 S TENSOR REMARK 3 S11: -0.1079 S12: 0.1189 S13: -0.0083 REMARK 3 S21: 0.2456 S22: -0.2525 S23: -0.2284 REMARK 3 S31: -1.3667 S32: -0.4998 S33: 0.4255 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 9 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8941 2.3421 -4.4645 REMARK 3 T TENSOR REMARK 3 T11: 0.4186 T22: 0.2317 REMARK 3 T33: -0.0866 T12: 0.0698 REMARK 3 T13: -0.0136 T23: 0.0635 REMARK 3 L TENSOR REMARK 3 L11: 4.7611 L22: 4.0972 REMARK 3 L33: 7.8921 L12: -1.0299 REMARK 3 L13: -3.4493 L23: 4.1463 REMARK 3 S TENSOR REMARK 3 S11: 0.1641 S12: -0.7444 S13: 0.2304 REMARK 3 S21: 0.5895 S22: 0.1883 S23: -0.0170 REMARK 3 S31: -0.8843 S32: 0.1443 S33: -0.3143 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8355 3.6687 -28.3311 REMARK 3 T TENSOR REMARK 3 T11: 0.1948 T22: 0.1136 REMARK 3 T33: 0.3497 T12: 0.0013 REMARK 3 T13: -0.0715 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 1.0354 L22: 3.0970 REMARK 3 L33: 8.5084 L12: 1.4295 REMARK 3 L13: -1.6979 L23: -3.0201 REMARK 3 S TENSOR REMARK 3 S11: 0.2248 S12: 0.0344 S13: -0.0125 REMARK 3 S21: -0.2417 S22: 0.2279 S23: 0.3122 REMARK 3 S31: -0.1374 S32: 0.1298 S33: -0.3287 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8901 13.8042 -24.4581 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.0995 REMARK 3 T33: 0.2976 T12: 0.0073 REMARK 3 T13: -0.0502 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 1.2061 L22: 2.4974 REMARK 3 L33: 8.4781 L12: 0.1760 REMARK 3 L13: 0.5484 L23: -0.8044 REMARK 3 S TENSOR REMARK 3 S11: 0.1255 S12: 0.0620 S13: -0.1455 REMARK 3 S21: -0.0450 S22: -0.0927 S23: -0.2728 REMARK 3 S31: 0.2205 S32: 0.3071 S33: 0.0203 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204174. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.07 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6316 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 33.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.13740 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4WOL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE CHLORIDE PH REMARK 280 6.07, 19.7 %W/V PEG 3350, 0.27 M CALCIUM CHLORIDE, LIPIDIC CUBIC REMARK 280 PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 25.39850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.84250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.39850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.84250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 8 REMARK 465 CYS B 8 REMARK 465 CYS C 8 REMARK 465 CYS D 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 9 N CB OG REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 SER B 9 OG REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 SER C 9 OG REMARK 470 ARG C 39 CG CD NE CZ NH1 NH2 REMARK 470 SER D 9 N CB OG REMARK 470 ARG D 39 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O23 OLC B 101 O HOH B 201 2.13 REMARK 500 O HOH C 206 O HOH C 211 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 -91.58 -113.36 REMARK 500 THR B 10 -118.73 54.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 102 REMARK 610 OLC D 101 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 ASP A 23 OD2 50.1 REMARK 620 3 HOH A 203 O 51.3 101.0 REMARK 620 4 HOH A 205 O 86.2 76.4 105.1 REMARK 620 5 ASP B 23 OD2 87.7 93.8 76.7 170.2 REMARK 620 6 HOH B 204 O 144.9 164.1 94.7 96.8 92.6 REMARK 620 7 HOH D 205 O 132.6 84.0 160.5 94.4 84.2 82.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 HOH A 203 O 91.6 REMARK 620 3 HOH A 204 O 70.6 78.2 REMARK 620 4 ASP B 23 OD1 99.3 122.1 158.4 REMARK 620 5 ASP B 23 OD2 82.8 78.3 143.7 47.6 REMARK 620 6 HOH C 204 O 72.9 157.3 81.0 77.7 114.9 REMARK 620 7 HOH C 205 O 165.5 102.2 116.0 69.9 95.8 94.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC D 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L34 RELATED DB: PDB REMARK 900 2L34 WAS SOLVED BY NMR REMARK 900 RELATED ID: 2L35 RELATED DB: PDB REMARK 900 2L35 WAS SOLVED BY NMR REMARK 900 RELATED ID: 4WOL RELATED DB: PDB DBREF 4WO1 A 8 40 UNP O43914 TYOBP_HUMAN 35 67 DBREF 4WO1 B 8 40 UNP O43914 TYOBP_HUMAN 35 67 DBREF 4WO1 C 8 40 UNP O43914 TYOBP_HUMAN 35 67 DBREF 4WO1 D 8 40 UNP O43914 TYOBP_HUMAN 35 67 SEQADV 4WO1 VAL A 21 UNP O43914 MET 48 ENGINEERED MUTATION SEQADV 4WO1 VAL B 21 UNP O43914 MET 48 ENGINEERED MUTATION SEQADV 4WO1 VAL C 21 UNP O43914 MET 48 ENGINEERED MUTATION SEQADV 4WO1 VAL D 21 UNP O43914 MET 48 ENGINEERED MUTATION SEQRES 1 A 33 CYS SER THR VAL SER PRO GLY VAL LEU ALA GLY ILE VAL SEQRES 2 A 33 VAL GLY ASP LEU VAL LEU THR VAL LEU ILE ALA LEU ALA SEQRES 3 A 33 VAL TYR PHE LEU GLY ARG LEU SEQRES 1 B 33 CYS SER THR VAL SER PRO GLY VAL LEU ALA GLY ILE VAL SEQRES 2 B 33 VAL GLY ASP LEU VAL LEU THR VAL LEU ILE ALA LEU ALA SEQRES 3 B 33 VAL TYR PHE LEU GLY ARG LEU SEQRES 1 C 33 CYS SER THR VAL SER PRO GLY VAL LEU ALA GLY ILE VAL SEQRES 2 C 33 VAL GLY ASP LEU VAL LEU THR VAL LEU ILE ALA LEU ALA SEQRES 3 C 33 VAL TYR PHE LEU GLY ARG LEU SEQRES 1 D 33 CYS SER THR VAL SER PRO GLY VAL LEU ALA GLY ILE VAL SEQRES 2 D 33 VAL GLY ASP LEU VAL LEU THR VAL LEU ILE ALA LEU ALA SEQRES 3 D 33 VAL TYR PHE LEU GLY ARG LEU HET CA A 101 2 HET OLC A 102 10 HET OLC B 101 25 HET OLC B 102 25 HET OLC C 101 25 HET OLC D 101 11 HET OLC D 102 25 HETNAM CA CALCIUM ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 5 CA CA 2+ FORMUL 6 OLC 6(C21 H40 O4) FORMUL 12 HOH *31(H2 O) HELIX 1 AA1 SER A 12 LEU A 40 1 29 HELIX 2 AA2 SER B 12 ARG B 39 1 28 HELIX 3 AA3 SER C 12 ARG C 39 1 28 HELIX 4 AA4 SER D 12 LEU D 40 1 29 LINK OD1 ASP A 23 CA A CA A 101 1555 1555 2.70 LINK OD1 ASP A 23 CA B CA A 101 1555 1555 2.34 LINK OD2 ASP A 23 CA A CA A 101 1555 1555 2.48 LINK CA A CA A 101 O AHOH A 203 1555 1555 2.44 LINK CA B CA A 101 O BHOH A 203 1555 1555 2.35 LINK CA B CA A 101 O HOH A 204 1555 1555 2.77 LINK CA A CA A 101 O HOH A 205 1555 1555 2.33 LINK CA B CA A 101 OD1 ASP B 23 1555 1555 2.64 LINK CA A CA A 101 OD2 ASP B 23 1555 1555 2.20 LINK CA B CA A 101 OD2 ASP B 23 1555 1555 2.79 LINK CA A CA A 101 O HOH B 204 1555 1555 2.98 LINK CA B CA A 101 O HOH C 204 1555 1555 2.39 LINK CA B CA A 101 O HOH C 205 1555 1555 2.38 LINK CA A CA A 101 O HOH D 205 1555 1555 2.29 SITE 1 AC1 9 ASP A 23 HOH A 203 HOH A 204 HOH A 205 SITE 2 AC1 9 ASP B 23 HOH B 204 HOH C 204 HOH C 205 SITE 3 AC1 9 HOH D 205 SITE 1 AC2 4 VAL A 34 VAL C 34 TYR C 35 OLC D 101 SITE 1 AC3 8 GLY A 14 GLY A 18 GLY A 22 LEU B 29 SITE 2 AC3 8 PHE B 36 LEU B 40 HOH B 201 VAL C 21 SITE 1 AC4 6 LEU A 29 PHE A 36 GLY B 14 GLY B 18 SITE 2 AC4 6 VAL B 21 GLY B 22 SITE 1 AC5 7 ALA B 17 GLY C 18 ILE C 19 GLY C 22 SITE 2 AC5 7 LEU D 29 LEU D 32 PHE D 36 SITE 1 AC6 5 OLC A 102 VAL B 34 ALA D 31 VAL D 34 SITE 2 AC6 5 TYR D 35 SITE 1 AC7 8 VAL A 20 LEU C 29 LEU C 37 VAL D 15 SITE 2 AC7 8 GLY D 18 ILE D 19 GLY D 22 LEU D 26 CRYST1 50.797 43.685 50.605 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019686 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019761 0.00000