PDB Short entry for 4WP7 HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 17-OCT-14 4WP7 TITLE STRUCTURE OF HUMAN ALDH1A1 WITH INHIBITOR CM026 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINAL DEHYDROGENASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RALDH1,ALDH-E1,ALHDII,ALDEHYDE DEHYDROGENASE FAMILY 1 MEMBER COMPND 5 A1,ALDEHYDE DEHYDROGENASE,CYTOSOLIC; COMPND 6 EC: 1.2.1.36; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALDH1A1, ALDC, ALDH1, PUMB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE ENZYME INHIBITOR, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.MORGAN,T.D.HURLEY REVDAT 5 27-DEC-23 4WP7 1 REMARK LINK REVDAT 4 11-DEC-19 4WP7 1 REMARK REVDAT 3 06-SEP-17 4WP7 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 11-MAR-15 4WP7 1 JRNL REVDAT 1 11-FEB-15 4WP7 0 JRNL AUTH C.A.MORGAN,T.D.HURLEY JRNL TITL CHARACTERIZATION OF TWO DISTINCT STRUCTURAL CLASSES OF JRNL TITL 2 SELECTIVE ALDEHYDE DEHYDROGENASE 1A1 INHIBITORS. JRNL REF J.MED.CHEM. V. 58 1964 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25634381 JRNL DOI 10.1021/JM501900S REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2375 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.852 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3894 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3686 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5292 ; 1.259 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8491 ; 0.745 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 499 ; 5.642 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;35.653 ;24.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 633 ;13.211 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.903 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 586 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4447 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 865 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1984 ; 0.537 ; 1.332 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1983 ; 0.533 ; 1.332 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2481 ; 0.869 ; 1.995 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2482 ; 0.870 ; 1.995 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1910 ; 0.848 ; 1.488 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1910 ; 0.848 ; 1.488 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2810 ; 1.328 ; 2.193 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4600 ; 5.084 ;12.291 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4601 ; 5.084 ;12.297 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 52.5974 -31.3099 28.4571 REMARK 3 T TENSOR REMARK 3 T11: 0.3420 T22: 0.2157 REMARK 3 T33: 0.3846 T12: 0.1240 REMARK 3 T13: 0.2678 T23: 0.2579 REMARK 3 L TENSOR REMARK 3 L11: 3.0025 L22: 1.4106 REMARK 3 L33: 1.1591 L12: -0.1241 REMARK 3 L13: -0.1782 L23: -0.7951 REMARK 3 S TENSOR REMARK 3 S11: -0.2650 S12: -0.4939 S13: -0.6606 REMARK 3 S21: 0.4393 S22: 0.0448 S23: 0.1576 REMARK 3 S31: 0.1107 S32: 0.0645 S33: 0.2202 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 56.0525 -17.1170 17.4507 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.1012 REMARK 3 T33: 0.1470 T12: 0.0645 REMARK 3 T13: 0.0997 T23: 0.0886 REMARK 3 L TENSOR REMARK 3 L11: 1.2887 L22: 1.0827 REMARK 3 L33: 0.3663 L12: 0.0588 REMARK 3 L13: -0.2997 L23: -0.0637 REMARK 3 S TENSOR REMARK 3 S11: -0.2130 S12: -0.2948 S13: -0.3157 REMARK 3 S21: 0.2921 S22: 0.0403 S23: 0.0978 REMARK 3 S31: 0.0553 S32: 0.0331 S33: 0.1727 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 483 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0744 -10.3492 21.1027 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.1488 REMARK 3 T33: 0.2670 T12: 0.0692 REMARK 3 T13: 0.1817 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 1.6740 L22: 1.5315 REMARK 3 L33: 0.8354 L12: 0.3398 REMARK 3 L13: -0.3822 L23: -0.5222 REMARK 3 S TENSOR REMARK 3 S11: -0.2049 S12: -0.3033 S13: -0.1918 REMARK 3 S21: 0.2820 S22: 0.1082 S23: 0.4337 REMARK 3 S31: 0.0219 S32: -0.0763 S33: 0.0967 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 484 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 69.6329 3.9039 5.0355 REMARK 3 T TENSOR REMARK 3 T11: 0.0470 T22: 0.0327 REMARK 3 T33: 0.0892 T12: 0.0016 REMARK 3 T13: -0.0436 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.7200 L22: 2.8939 REMARK 3 L33: 1.2668 L12: 0.4301 REMARK 3 L13: -0.3606 L23: -1.4957 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: -0.0179 S13: 0.2064 REMARK 3 S21: 0.1365 S22: 0.1437 S23: 0.0867 REMARK 3 S31: -0.0673 S32: -0.0470 S33: -0.0507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2-7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44544 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SODIUM CHLORIDE, 100MM REMARK 280 BISTRIS BUFFER, YTTERBIUM CHLORIDE, SITTING DROP LIGAND SOAK REMARK 280 OVERNIGHT, PH 7.0, EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -156.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 109.05400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 109.05400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 8 CG OD1 OD2 REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 THR A 14 OG1 CG2 REMARK 470 ASP A 15 CG OD1 OD2 REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 VAL A 33 CG1 CG2 REMARK 470 SER A 34 OG REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLN A 51 CG CD OE1 NE2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 GLU A 393 CG CD OE1 OE2 REMARK 470 LYS A 412 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 936 O HOH A 939 0.98 REMARK 500 YB YB A 601 O HOH A 939 1.64 REMARK 500 YB YB A 601 O HOH A 936 1.71 REMARK 500 OE1 GLU A 84 O HOH A 701 2.11 REMARK 500 ND2 ASN A 42 O HOH A 913 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 50 -179.64 -171.52 REMARK 500 THR A 228 -73.64 -110.68 REMARK 500 SER A 261 -86.48 -93.54 REMARK 500 LEU A 270 -157.09 -121.58 REMARK 500 GLN A 301 54.36 -96.25 REMARK 500 TYR A 380 58.43 -98.96 REMARK 500 LYS A 470 -138.09 58.25 REMARK 500 LEU A 478 178.83 68.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 601 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 714 O REMARK 620 2 HOH A 781 O 121.6 REMARK 620 3 HOH A 781 O 82.5 106.5 REMARK 620 4 HOH A 792 O 67.4 168.7 66.6 REMARK 620 5 HOH A 940 O 135.1 103.2 85.9 68.1 REMARK 620 6 HOH A 941 O 67.5 137.2 116.3 50.4 79.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YB A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3SR A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YB A 604 DBREF 4WP7 A 1 501 UNP P00352 AL1A1_HUMAN 1 501 SEQADV 4WP7 SER A 121 UNP P00352 ASN 121 ENGINEERED MUTATION SEQRES 1 A 501 MET SER SER SER GLY THR PRO ASP LEU PRO VAL LEU LEU SEQRES 2 A 501 THR ASP LEU LYS ILE GLN TYR THR LYS ILE PHE ILE ASN SEQRES 3 A 501 ASN GLU TRP HIS ASP SER VAL SER GLY LYS LYS PHE PRO SEQRES 4 A 501 VAL PHE ASN PRO ALA THR GLU GLU GLU LEU CYS GLN VAL SEQRES 5 A 501 GLU GLU GLY ASP LYS GLU ASP VAL ASP LYS ALA VAL LYS SEQRES 6 A 501 ALA ALA ARG GLN ALA PHE GLN ILE GLY SER PRO TRP ARG SEQRES 7 A 501 THR MET ASP ALA SER GLU ARG GLY ARG LEU LEU TYR LYS SEQRES 8 A 501 LEU ALA ASP LEU ILE GLU ARG ASP ARG LEU LEU LEU ALA SEQRES 9 A 501 THR MET GLU SER MET ASN GLY GLY LYS LEU TYR SER ASN SEQRES 10 A 501 ALA TYR LEU SER ASP LEU ALA GLY CYS ILE LYS THR LEU SEQRES 11 A 501 ARG TYR CYS ALA GLY TRP ALA ASP LYS ILE GLN GLY ARG SEQRES 12 A 501 THR ILE PRO ILE ASP GLY ASN PHE PHE THR TYR THR ARG SEQRES 13 A 501 HIS GLU PRO ILE GLY VAL CYS GLY GLN ILE ILE PRO TRP SEQRES 14 A 501 ASN PHE PRO LEU VAL MET LEU ILE TRP LYS ILE GLY PRO SEQRES 15 A 501 ALA LEU SER CYS GLY ASN THR VAL VAL VAL LYS PRO ALA SEQRES 16 A 501 GLU GLN THR PRO LEU THR ALA LEU HIS VAL ALA SER LEU SEQRES 17 A 501 ILE LYS GLU ALA GLY PHE PRO PRO GLY VAL VAL ASN ILE SEQRES 18 A 501 VAL PRO GLY TYR GLY PRO THR ALA GLY ALA ALA ILE SER SEQRES 19 A 501 SER HIS MET ASP ILE ASP LYS VAL ALA PHE THR GLY SER SEQRES 20 A 501 THR GLU VAL GLY LYS LEU ILE LYS GLU ALA ALA GLY LYS SEQRES 21 A 501 SER ASN LEU LYS ARG VAL THR LEU GLU LEU GLY GLY LYS SEQRES 22 A 501 SER PRO CYS ILE VAL LEU ALA ASP ALA ASP LEU ASP ASN SEQRES 23 A 501 ALA VAL GLU PHE ALA HIS HIS GLY VAL PHE TYR HIS GLN SEQRES 24 A 501 GLY GLN CYS CYS ILE ALA ALA SER ARG ILE PHE VAL GLU SEQRES 25 A 501 GLU SER ILE TYR ASP GLU PHE VAL ARG ARG SER VAL GLU SEQRES 26 A 501 ARG ALA LYS LYS TYR ILE LEU GLY ASN PRO LEU THR PRO SEQRES 27 A 501 GLY VAL THR GLN GLY PRO GLN ILE ASP LYS GLU GLN TYR SEQRES 28 A 501 ASP LYS ILE LEU ASP LEU ILE GLU SER GLY LYS LYS GLU SEQRES 29 A 501 GLY ALA LYS LEU GLU CYS GLY GLY GLY PRO TRP GLY ASN SEQRES 30 A 501 LYS GLY TYR PHE VAL GLN PRO THR VAL PHE SER ASN VAL SEQRES 31 A 501 THR ASP GLU MET ARG ILE ALA LYS GLU GLU ILE PHE GLY SEQRES 32 A 501 PRO VAL GLN GLN ILE MET LYS PHE LYS SER LEU ASP ASP SEQRES 33 A 501 VAL ILE LYS ARG ALA ASN ASN THR PHE TYR GLY LEU SER SEQRES 34 A 501 ALA GLY VAL PHE THR LYS ASP ILE ASP LYS ALA ILE THR SEQRES 35 A 501 ILE SER SER ALA LEU GLN ALA GLY THR VAL TRP VAL ASN SEQRES 36 A 501 CYS TYR GLY VAL VAL SER ALA GLN CYS PRO PHE GLY GLY SEQRES 37 A 501 PHE LYS MET SER GLY ASN GLY ARG GLU LEU GLY GLU TYR SEQRES 38 A 501 GLY PHE HIS GLU TYR THR GLU VAL LYS THR VAL THR VAL SEQRES 39 A 501 LYS ILE SER GLN LYS ASN SER HET YB A 601 1 HET 3SR A 602 32 HET CL A 603 1 HET YB A 604 1 HETNAM YB YTTERBIUM (III) ION HETNAM 3SR 8-{[4-(FURAN-2-YLCARBONYL)PIPERAZIN-1-YL]METHYL}-1,3- HETNAM 2 3SR DIMETHYL-7-(3-METHYLBUTYL)-3,7-DIHYDRO-1H-PURINE-2,6- HETNAM 3 3SR DIONE HETNAM CL CHLORIDE ION FORMUL 2 YB 2(YB 3+) FORMUL 3 3SR C22 H30 N6 O4 FORMUL 4 CL CL 1- FORMUL 6 HOH *241(H2 O) HELIX 1 AA1 ASP A 56 PHE A 71 1 16 HELIX 2 AA2 SER A 75 MET A 80 1 6 HELIX 3 AA3 ASP A 81 ASP A 99 1 19 HELIX 4 AA4 ASP A 99 GLY A 112 1 14 HELIX 5 AA5 LEU A 114 SER A 121 1 8 HELIX 6 AA6 SER A 121 ALA A 137 1 17 HELIX 7 AA7 ASP A 138 ILE A 140 5 3 HELIX 8 AA8 PHE A 171 CYS A 186 1 16 HELIX 9 AA9 PRO A 199 GLY A 213 1 15 HELIX 10 AB1 THR A 228 HIS A 236 1 9 HELIX 11 AB2 SER A 247 SER A 261 1 15 HELIX 12 AB3 ASP A 283 TYR A 297 1 15 HELIX 13 AB4 HIS A 298 GLN A 301 5 4 HELIX 14 AB5 GLU A 313 LYS A 328 1 16 HELIX 15 AB6 ASP A 347 GLU A 364 1 18 HELIX 16 AB7 MET A 394 GLU A 399 1 6 HELIX 17 AB8 SER A 413 ASN A 423 1 11 HELIX 18 AB9 ASP A 436 LEU A 447 1 12 HELIX 19 AC1 PHE A 469 MET A 471 5 3 HELIX 20 AC2 LEU A 478 PHE A 483 1 6 SHEET 1 AA1 2 ILE A 23 ILE A 25 0 SHEET 2 AA1 2 GLU A 28 HIS A 30 -1 O HIS A 30 N ILE A 23 SHEET 1 AA2 2 LYS A 37 PHE A 41 0 SHEET 2 AA2 2 GLU A 48 GLU A 53 -1 O LEU A 49 N VAL A 40 SHEET 1 AA3 3 THR A 144 ILE A 145 0 SHEET 2 AA3 3 PHE A 151 PRO A 159 -1 O THR A 153 N ILE A 145 SHEET 3 AA3 3 THR A 487 LYS A 495 -1 O VAL A 494 N PHE A 152 SHEET 1 AA4 6 VAL A 219 ILE A 221 0 SHEET 2 AA4 6 THR A 189 LYS A 193 1 N VAL A 192 O ASN A 220 SHEET 3 AA4 6 VAL A 162 ILE A 166 1 N GLN A 165 O LYS A 193 SHEET 4 AA4 6 LYS A 241 THR A 245 1 O LYS A 241 N GLY A 164 SHEET 5 AA4 6 ARG A 265 GLU A 269 1 O ARG A 265 N VAL A 242 SHEET 6 AA4 6 GLY A 473 ASN A 474 -1 O ASN A 474 N LEU A 268 SHEET 1 AA5 7 LYS A 367 CYS A 370 0 SHEET 2 AA5 7 THR A 385 SER A 388 -1 O SER A 388 N LYS A 367 SHEET 3 AA5 7 VAL A 405 PHE A 411 1 O GLN A 406 N PHE A 387 SHEET 4 AA5 7 ARG A 308 GLU A 312 1 N ILE A 309 O MET A 409 SHEET 5 AA5 7 PRO A 275 VAL A 278 1 N VAL A 278 O PHE A 310 SHEET 6 AA5 7 SER A 429 PHE A 433 1 O PHE A 433 N ILE A 277 SHEET 7 AA5 7 THR A 451 VAL A 454 1 O TRP A 453 N ALA A 430 SHEET 1 AA6 2 PRO A 374 TRP A 375 0 SHEET 2 AA6 2 PHE A 381 VAL A 382 -1 O PHE A 381 N TRP A 375 LINK YB YB A 601 O HOH A 714 1555 1555 2.45 LINK YB YB A 601 O HOH A 781 1555 1555 2.71 LINK YB YB A 601 O HOH A 781 1555 8556 2.34 LINK YB YB A 601 O HOH A 792 1555 1555 2.63 LINK YB YB A 601 O HOH A 940 1555 1555 2.65 LINK YB YB A 601 O HOH A 941 1555 1555 2.62 LINK YB YB A 604 O HOH A 778 1555 5656 3.09 SITE 1 AC1 7 HOH A 714 HOH A 781 HOH A 792 HOH A 936 SITE 2 AC1 7 HOH A 939 HOH A 940 HOH A 941 SITE 1 AC2 14 SER A 121 GLY A 125 THR A 129 PHE A 171 SITE 2 AC2 14 TRP A 178 HIS A 293 GLY A 294 TYR A 297 SITE 3 AC2 14 CYS A 302 ILE A 304 GLY A 458 VAL A 460 SITE 4 AC2 14 ALA A 462 HOH A 896 SITE 1 AC3 3 ARG A 143 THR A 155 HIS A 157 SITE 1 AC4 1 HOH A 778 CRYST1 109.054 109.054 83.225 90.00 90.00 90.00 P 4 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009170 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012016 0.00000