PDB Short entry for 4X44 HEADER TRANSFERASE 02-DEC-14 4X44 TITLE CRYSTAL STRUCTURE OF MUTANT R89Q OF HUMAN ADENINE TITLE 2 PHOSPHORIBOSYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APRT; COMPND 5 EC: 2.4.2.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APRT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS APRT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PIMENTA,H.M.PEREIRA,G.MERCALDI,O.H.THIEMANN REVDAT 2 28-FEB-24 4X44 1 REMARK REVDAT 1 02-DEC-15 4X44 0 JRNL AUTH A.PIMENTA,H.M.PEREIRA,G.MERCALDI,O.H.THIEMANN JRNL TITL CRYSTAL STRUCTURE OF MUTANT R89Q OF HUMAN ADENINE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.3200 - 3.2595 1.00 3234 166 0.1526 0.1652 REMARK 3 2 3.2595 - 2.5872 1.00 3050 159 0.1735 0.2174 REMARK 3 3 2.5872 - 2.2601 1.00 3024 159 0.1842 0.2369 REMARK 3 4 2.2601 - 2.0535 0.99 2953 144 0.1993 0.2589 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1414 REMARK 3 ANGLE : 0.661 1920 REMARK 3 CHIRALITY : 0.045 216 REMARK 3 PLANARITY : 0.003 244 REMARK 3 DIHEDRAL : 14.536 539 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9058 -14.5224 35.2639 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1672 REMARK 3 T33: 0.2203 T12: 0.0092 REMARK 3 T13: 0.0287 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 3.2608 L22: 3.5641 REMARK 3 L33: 4.0435 L12: 0.7104 REMARK 3 L13: 0.1512 L23: 0.0869 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: -0.3385 S13: -0.5608 REMARK 3 S21: 0.2810 S22: -0.0891 S23: -0.2208 REMARK 3 S31: 0.3057 S32: 0.1753 S33: 0.0942 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7092 -1.3592 36.7310 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.1300 REMARK 3 T33: 0.1123 T12: 0.0082 REMARK 3 T13: 0.0113 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 2.6165 L22: 2.3180 REMARK 3 L33: 2.0516 L12: -0.0197 REMARK 3 L13: -0.5454 L23: 0.1771 REMARK 3 S TENSOR REMARK 3 S11: -0.0693 S12: -0.0303 S13: 0.1179 REMARK 3 S21: 0.0762 S22: -0.0039 S23: 0.2138 REMARK 3 S31: -0.0781 S32: -0.1081 S33: 0.0637 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8224 -11.7717 23.9115 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.1010 REMARK 3 T33: 0.1380 T12: 0.0353 REMARK 3 T13: 0.0190 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.3612 L22: 1.0342 REMARK 3 L33: 5.2911 L12: 0.3910 REMARK 3 L13: 0.5762 L23: 0.8973 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.0335 S13: -0.0553 REMARK 3 S21: -0.0255 S22: -0.1143 S23: 0.0131 REMARK 3 S31: 0.3454 S32: 0.2245 S33: -0.0225 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6630 -1.8044 20.0445 REMARK 3 T TENSOR REMARK 3 T11: 0.1192 T22: 0.0934 REMARK 3 T33: 0.1292 T12: -0.0152 REMARK 3 T13: 0.0064 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 2.2650 L22: 2.5747 REMARK 3 L33: 2.8682 L12: -0.9669 REMARK 3 L13: -0.9087 L23: 0.4969 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: 0.0185 S13: -0.1264 REMARK 3 S21: 0.0250 S22: -0.0551 S23: -0.0478 REMARK 3 S31: -0.0067 S32: 0.0641 S33: 0.0361 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3198 9.6008 17.6422 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.1227 REMARK 3 T33: 0.1347 T12: -0.0169 REMARK 3 T13: 0.0020 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.0450 L22: 2.6500 REMARK 3 L33: 1.2919 L12: -0.8295 REMARK 3 L13: 0.5247 L23: -0.6083 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: -0.1273 S13: 0.2081 REMARK 3 S21: 0.1797 S22: 0.0871 S23: -0.0972 REMARK 3 S31: -0.1436 S32: 0.0638 S33: 0.0364 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3027 9.8801 16.3553 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.1892 REMARK 3 T33: 0.1866 T12: 0.0414 REMARK 3 T13: 0.0214 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.8948 L22: 2.3853 REMARK 3 L33: 2.0918 L12: 0.6590 REMARK 3 L13: -0.0225 L23: -0.6206 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.3522 S13: -0.0326 REMARK 3 S21: 0.2017 S22: 0.1509 S23: 0.3900 REMARK 3 S31: -0.1073 S32: -0.1758 S33: -0.1318 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4499 1.9721 12.9393 REMARK 3 T TENSOR REMARK 3 T11: 0.1081 T22: 0.0886 REMARK 3 T33: 0.1187 T12: 0.0004 REMARK 3 T13: -0.0109 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.7925 L22: 1.5522 REMARK 3 L33: 2.0573 L12: -0.0774 REMARK 3 L13: 0.1198 L23: -0.7176 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.0322 S13: -0.0001 REMARK 3 S21: -0.1259 S22: 0.0730 S23: 0.0147 REMARK 3 S31: 0.1686 S32: 0.1204 S33: -0.0750 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5304 -6.0822 17.2136 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1268 REMARK 3 T33: 0.1472 T12: -0.0119 REMARK 3 T13: -0.0196 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.6018 L22: 1.3302 REMARK 3 L33: 1.9703 L12: 0.2100 REMARK 3 L13: -0.9016 L23: -0.5009 REMARK 3 S TENSOR REMARK 3 S11: -0.1148 S12: 0.0893 S13: -0.1339 REMARK 3 S21: -0.1878 S22: 0.0771 S23: 0.2313 REMARK 3 S31: 0.2829 S32: -0.2660 S33: 0.0210 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4892 -10.3575 21.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.1292 REMARK 3 T33: 0.1072 T12: -0.0056 REMARK 3 T13: -0.0170 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.7598 L22: 2.3579 REMARK 3 L33: 4.8905 L12: 0.2097 REMARK 3 L13: 0.2560 L23: -1.1697 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: -0.0245 S13: -0.1754 REMARK 3 S21: -0.1416 S22: 0.0756 S23: 0.1502 REMARK 3 S31: 0.1365 S32: -0.4317 S33: -0.0812 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.458 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.053 REMARK 200 RESOLUTION RANGE LOW (A) : 52.305 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : 0.13700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : 0.47800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.5% PEG 4000, 85MM TRIS PH 8.5, REMARK 280 170MM SODIUM ACETATE, 15% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.88600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.74650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.74650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.32900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.74650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.74650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.44300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.74650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.74650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.32900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.74650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.74650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.44300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.88600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.88600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1175 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 40 NE CZ NH1 NH2 REMARK 470 LYS A 51 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1233 O HOH A 1299 2.02 REMARK 500 NH1 ARG A 57 O HOH A 1291 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1147 O HOH A 1180 7555 2.05 REMARK 500 O HOH A 1124 O HOH A 1174 8555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 131 -102.02 -111.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1234 DISTANCE = 6.29 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X45 RELATED DB: PDB DBREF 4X44 A 1 180 UNP P07741 APT_HUMAN 1 180 SEQADV 4X44 GLN A 89 UNP P07741 ARG 89 ENGINEERED MUTATION SEQRES 1 A 180 MET ALA ASP SER GLU LEU GLN LEU VAL GLU GLN ARG ILE SEQRES 2 A 180 ARG SER PHE PRO ASP PHE PRO THR PRO GLY VAL VAL PHE SEQRES 3 A 180 ARG ASP ILE SER PRO VAL LEU LYS ASP PRO ALA SER PHE SEQRES 4 A 180 ARG ALA ALA ILE GLY LEU LEU ALA ARG HIS LEU LYS ALA SEQRES 5 A 180 THR HIS GLY GLY ARG ILE ASP TYR ILE ALA GLY LEU ASP SEQRES 6 A 180 SER ARG GLY PHE LEU PHE GLY PRO SER LEU ALA GLN GLU SEQRES 7 A 180 LEU GLY LEU GLY CYS VAL LEU ILE ARG LYS GLN GLY LYS SEQRES 8 A 180 LEU PRO GLY PRO THR LEU TRP ALA SER TYR SER LEU GLU SEQRES 9 A 180 TYR GLY LYS ALA GLU LEU GLU ILE GLN LYS ASP ALA LEU SEQRES 10 A 180 GLU PRO GLY GLN ARG VAL VAL VAL VAL ASP ASP LEU LEU SEQRES 11 A 180 ALA THR GLY GLY THR MET ASN ALA ALA CYS GLU LEU LEU SEQRES 12 A 180 GLY ARG LEU GLN ALA GLU VAL LEU GLU CYS VAL SER LEU SEQRES 13 A 180 VAL GLU LEU THR SER LEU LYS GLY ARG GLU LYS LEU ALA SEQRES 14 A 180 PRO VAL PRO PHE PHE SER LEU LEU GLN TYR GLU HET AMP A1001 23 HET SO4 A1002 5 HET GOL A1003 6 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *214(H2 O) HELIX 1 AA1 SER A 4 GLN A 11 1 8 HELIX 2 AA2 ILE A 29 ASP A 35 1 7 HELIX 3 AA3 ASP A 35 GLY A 55 1 21 HELIX 4 AA4 SER A 66 LEU A 70 5 5 HELIX 5 AA5 PHE A 71 LEU A 79 1 9 HELIX 6 AA6 GLY A 133 LEU A 146 1 14 HELIX 7 AA7 LYS A 163 ALA A 169 1 7 SHEET 1 AA1 2 ARG A 14 PHE A 16 0 SHEET 2 AA1 2 PHE A 26 ASP A 28 -1 O ASP A 28 N ARG A 14 SHEET 1 AA2 7 THR A 96 SER A 102 0 SHEET 2 AA2 7 LYS A 107 GLN A 113 -1 O ALA A 108 N TYR A 101 SHEET 3 AA2 7 GLY A 82 LYS A 88 -1 N ARG A 87 O GLU A 111 SHEET 4 AA2 7 TYR A 60 LEU A 64 1 N ILE A 61 O VAL A 84 SHEET 5 AA2 7 ARG A 122 LEU A 130 1 O VAL A 124 N ALA A 62 SHEET 6 AA2 7 GLU A 149 LEU A 159 1 O GLU A 149 N VAL A 123 SHEET 7 AA2 7 PHE A 173 TYR A 179 1 O TYR A 179 N GLU A 158 CISPEP 1 PHE A 19 PRO A 20 0 1.56 CISPEP 2 ASP A 65 SER A 66 0 0.54 CISPEP 3 ALA A 169 PRO A 170 0 8.02 SITE 1 AC1 19 VAL A 25 PHE A 26 ARG A 27 ARG A 67 SITE 2 AC1 19 ASP A 127 ASP A 128 LEU A 129 ALA A 131 SITE 3 AC1 19 THR A 132 GLY A 133 GLY A 134 THR A 135 SITE 4 AC1 19 LEU A 159 GOL A1003 HOH A1188 HOH A1193 SITE 5 AC1 19 HOH A1209 HOH A1210 HOH A1243 SITE 1 AC2 9 SER A 66 ARG A 67 ARG A 87 LYS A 91 SITE 2 AC2 9 HOH A1102 HOH A1123 HOH A1135 HOH A1152 SITE 3 AC2 9 HOH A1259 SITE 1 AC3 6 LEU A 103 LYS A 107 THR A 132 THR A 135 SITE 2 AC3 6 AMP A1001 HOH A1218 CRYST1 59.493 59.493 109.772 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016809 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009110 0.00000