PDB Short entry for 4X4O HEADER RNA BINDING PROTEIN 03-DEC-14 4X4O TITLE CRYSTAL STRUCTURE OF THE A.FULGIDUS CCA-ADDING ENZYME IN COMPLEX WITH TITLE 2 A G70A ARGINYL-TRNA MINIHELIX AND CTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCA-ADDING ENZYME; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CCA TRNA NUCLEOTIDYLTRANSFERASE,TRNA CCA-PYROPHOSPHORYLASE, COMPND 5 TRNA ADENYLYL-/CYTIDYLYL- TRANSFERASE,TRNA NUCLEOTIDYLTRANSFERASE, COMPND 6 TRNA-NT; COMPND 7 EC: 2.7.7.72; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: G70A TRNA MINIHELIX; COMPND 11 CHAIN: B, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126; SOURCE 5 GENE: CCA, AF_2156; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-RNA COMPLEX, TRNA, NON-CODING RNA, CCA-ADDING ENZYME, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, NCRNA, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.-D.KUHN,L.JOSHUA-TOR REVDAT 6 27-DEC-23 4X4O 1 REMARK LINK REVDAT 5 20-NOV-19 4X4O 1 REMARK REVDAT 4 22-NOV-17 4X4O 1 SOURCE REMARK REVDAT 3 25-FEB-15 4X4O 1 JRNL REVDAT 2 18-FEB-15 4X4O 1 JRNL REVDAT 1 11-FEB-15 4X4O 0 JRNL AUTH C.D.KUHN,J.E.WILUSZ,Y.ZHENG,P.A.BEAL,L.JOSHUA-TOR JRNL TITL ON-ENZYME REFOLDING PERMITS SMALL RNA AND TRNA SURVEILLANCE JRNL TITL 2 BY THE CCA-ADDING ENZYME. JRNL REF CELL V. 160 644 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 25640237 JRNL DOI 10.1016/J.CELL.2015.01.005 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6813 - 8.0144 0.96 2570 127 0.1569 0.1601 REMARK 3 2 8.0144 - 6.3820 0.96 2516 163 0.1769 0.1989 REMARK 3 3 6.3820 - 5.5814 0.96 2558 156 0.2081 0.2364 REMARK 3 4 5.5814 - 5.0738 0.96 2511 157 0.1861 0.2326 REMARK 3 5 5.0738 - 4.7117 0.95 2561 142 0.1788 0.2539 REMARK 3 6 4.7117 - 4.4349 0.96 2528 142 0.1792 0.2471 REMARK 3 7 4.4349 - 4.2134 0.95 2515 140 0.1959 0.2543 REMARK 3 8 4.2134 - 4.0305 0.95 2582 100 0.2036 0.2569 REMARK 3 9 4.0305 - 3.8757 0.94 2473 143 0.2119 0.2419 REMARK 3 10 3.8757 - 3.7422 0.96 2616 100 0.2391 0.2610 REMARK 3 11 3.7422 - 3.6254 0.96 2545 146 0.2424 0.3063 REMARK 3 12 3.6254 - 3.5219 0.95 2524 137 0.2582 0.3513 REMARK 3 13 3.5219 - 3.4293 0.96 2514 157 0.2714 0.3259 REMARK 3 14 3.4293 - 3.3458 0.95 2575 114 0.2771 0.3502 REMARK 3 15 3.3458 - 3.2698 0.96 2518 136 0.3061 0.3556 REMARK 3 16 3.2698 - 3.2003 0.86 2303 118 0.3362 0.3823 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 9180 REMARK 3 ANGLE : 0.755 12706 REMARK 3 CHIRALITY : 0.030 1395 REMARK 3 PLANARITY : 0.004 1377 REMARK 3 DIHEDRAL : 13.277 3702 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 4105 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 838 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4X4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000202135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23753 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.201 REMARK 200 RESOLUTION RANGE LOW (A) : 29.791 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : 0.48300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18.6% PEG 3,350, 0.2M POTASSIUM SODIUM REMARK 280 TARTRATE, 0.1M SODIUM ACETATE PH 5.6, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.52950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 107.80100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.52950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 107.80100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 438 REMARK 465 ASN A 439 REMARK 465 SER A 440 REMARK 465 SER A 441 REMARK 465 SER A 442 REMARK 465 VAL A 443 REMARK 465 ASP A 444 REMARK 465 LYS A 445 REMARK 465 LEU A 446 REMARK 465 ALA A 447 REMARK 465 ALA A 448 REMARK 465 ALA A 449 REMARK 465 LEU A 450 REMARK 465 GLU A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 ASP C 444 REMARK 465 LYS C 445 REMARK 465 LEU C 446 REMARK 465 ALA C 447 REMARK 465 ALA C 448 REMARK 465 ALA C 449 REMARK 465 LEU C 450 REMARK 465 GLU C 451 REMARK 465 HIS C 452 REMARK 465 HIS C 453 REMARK 465 HIS C 454 REMARK 465 HIS C 455 REMARK 465 HIS C 456 REMARK 465 HIS C 457 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET C 1 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 358 HH22 ARG A 363 1.58 REMARK 500 HD1 HIS A 398 OP1 G B 23 1.59 REMARK 500 OD2 ASP A 221 HO2' U B 30 1.59 REMARK 500 OE1 GLU A 96 HD1 HIS A 97 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 95 -73.92 -131.01 REMARK 500 GLU A 119 140.97 65.77 REMARK 500 VAL A 167 -53.73 -130.85 REMARK 500 MET A 314 70.07 52.38 REMARK 500 LEU A 316 -66.13 -102.64 REMARK 500 PRO A 424 45.95 -77.73 REMARK 500 GLU C 96 -30.25 77.44 REMARK 500 GLU C 119 145.04 68.14 REMARK 500 VAL C 167 -52.36 -129.32 REMARK 500 MET C 314 71.34 51.66 REMARK 500 LEU C 316 -67.66 -103.96 REMARK 500 GLU C 350 -72.42 -63.25 REMARK 500 ARG C 366 149.89 66.03 REMARK 500 PRO C 424 47.59 -75.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 59 OE1 REMARK 620 2 ASP A 61 OD2 84.5 REMARK 620 3 CTP A 501 O1A 104.0 75.2 REMARK 620 4 CTP A 501 O1B 166.6 82.1 71.9 REMARK 620 5 CTP A 501 O2G 118.0 157.2 101.0 75.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 13 OP2 REMARK 620 2 U B 14 O4 114.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 61 OD2 REMARK 620 2 CTP C 501 O2A 78.7 REMARK 620 3 CTP C 501 O1B 87.1 77.9 REMARK 620 4 CTP C 501 O2G 164.1 99.1 77.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTP C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTP D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X4N RELATED DB: PDB REMARK 900 RELATED ID: 4X4P RELATED DB: PDB REMARK 900 RELATED ID: 4X4Q RELATED DB: PDB REMARK 900 RELATED ID: 4X4R RELATED DB: PDB REMARK 900 RELATED ID: 4X4S RELATED DB: PDB REMARK 900 RELATED ID: 4X4T RELATED DB: PDB REMARK 900 RELATED ID: 4X4U RELATED DB: PDB REMARK 900 RELATED ID: 4X4V RELATED DB: PDB REMARK 900 RELATED ID: 4X4W RELATED DB: PDB REMARK 900 RELATED ID: 4X4X RELATED DB: PDB DBREF 4X4O A 1 437 UNP O28126 CCA_ARCFU 1 437 DBREF 4X4O B 1 34 PDB 4X4O 4X4O 1 34 DBREF 4X4O C 1 437 UNP O28126 CCA_ARCFU 1 437 DBREF 4X4O D 1 34 PDB 4X4O 4X4O 1 34 SEQADV 4X4O SER A 438 UNP O28126 EXPRESSION TAG SEQADV 4X4O ASN A 439 UNP O28126 EXPRESSION TAG SEQADV 4X4O SER A 440 UNP O28126 EXPRESSION TAG SEQADV 4X4O SER A 441 UNP O28126 EXPRESSION TAG SEQADV 4X4O SER A 442 UNP O28126 EXPRESSION TAG SEQADV 4X4O VAL A 443 UNP O28126 EXPRESSION TAG SEQADV 4X4O ASP A 444 UNP O28126 EXPRESSION TAG SEQADV 4X4O LYS A 445 UNP O28126 EXPRESSION TAG SEQADV 4X4O LEU A 446 UNP O28126 EXPRESSION TAG SEQADV 4X4O ALA A 447 UNP O28126 EXPRESSION TAG SEQADV 4X4O ALA A 448 UNP O28126 EXPRESSION TAG SEQADV 4X4O ALA A 449 UNP O28126 EXPRESSION TAG SEQADV 4X4O LEU A 450 UNP O28126 EXPRESSION TAG SEQADV 4X4O GLU A 451 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS A 452 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS A 453 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS A 454 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS A 455 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS A 456 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS A 457 UNP O28126 EXPRESSION TAG SEQADV 4X4O SER C 438 UNP O28126 EXPRESSION TAG SEQADV 4X4O ASN C 439 UNP O28126 EXPRESSION TAG SEQADV 4X4O SER C 440 UNP O28126 EXPRESSION TAG SEQADV 4X4O SER C 441 UNP O28126 EXPRESSION TAG SEQADV 4X4O SER C 442 UNP O28126 EXPRESSION TAG SEQADV 4X4O VAL C 443 UNP O28126 EXPRESSION TAG SEQADV 4X4O ASP C 444 UNP O28126 EXPRESSION TAG SEQADV 4X4O LYS C 445 UNP O28126 EXPRESSION TAG SEQADV 4X4O LEU C 446 UNP O28126 EXPRESSION TAG SEQADV 4X4O ALA C 447 UNP O28126 EXPRESSION TAG SEQADV 4X4O ALA C 448 UNP O28126 EXPRESSION TAG SEQADV 4X4O ALA C 449 UNP O28126 EXPRESSION TAG SEQADV 4X4O LEU C 450 UNP O28126 EXPRESSION TAG SEQADV 4X4O GLU C 451 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS C 452 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS C 453 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS C 454 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS C 455 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS C 456 UNP O28126 EXPRESSION TAG SEQADV 4X4O HIS C 457 UNP O28126 EXPRESSION TAG SEQRES 1 A 457 MET LYS VAL GLU GLU ILE LEU GLU LYS ALA LEU GLU LEU SEQRES 2 A 457 VAL ILE PRO ASP GLU GLU GLU VAL ARG LYS GLY ARG GLU SEQRES 3 A 457 ALA GLU GLU GLU LEU ARG ARG ARG LEU ASP GLU LEU GLY SEQRES 4 A 457 VAL GLU TYR VAL PHE VAL GLY SER TYR ALA ARG ASN THR SEQRES 5 A 457 TRP LEU LYS GLY SER LEU GLU ILE ASP VAL PHE LEU LEU SEQRES 6 A 457 PHE PRO GLU GLU PHE SER LYS GLU GLU LEU ARG GLU ARG SEQRES 7 A 457 GLY LEU GLU ILE GLY LYS ALA VAL LEU ASP SER TYR GLU SEQRES 8 A 457 ILE ARG TYR ALA GLU HIS PRO TYR VAL HIS GLY VAL VAL SEQRES 9 A 457 LYS GLY VAL GLU VAL ASP VAL VAL PRO CYS TYR LYS LEU SEQRES 10 A 457 LYS GLU PRO LYS ASN ILE LYS SER ALA VAL ASP ARG THR SEQRES 11 A 457 PRO PHE HIS HIS LYS TRP LEU GLU GLY ARG ILE LYS GLY SEQRES 12 A 457 LYS GLU ASN GLU VAL ARG LEU LEU LYS GLY PHE LEU LYS SEQRES 13 A 457 ALA ASN GLY ILE TYR GLY ALA GLU TYR LYS VAL ARG GLY SEQRES 14 A 457 PHE SER GLY TYR LEU CYS GLU LEU LEU ILE VAL PHE TYR SEQRES 15 A 457 GLY SER PHE LEU GLU THR VAL LYS ASN ALA ARG ARG TRP SEQRES 16 A 457 THR ARG ARG THR VAL ILE ASP VAL ALA LYS GLY GLU VAL SEQRES 17 A 457 ARG LYS GLY GLU GLU PHE PHE VAL VAL ASP PRO VAL ASP SEQRES 18 A 457 GLU LYS ARG ASN VAL ALA ALA ASN LEU SER LEU ASP ASN SEQRES 19 A 457 LEU ALA ARG PHE VAL HIS LEU CYS ARG GLU PHE MET GLU SEQRES 20 A 457 ALA PRO SER LEU GLY PHE PHE LYS PRO LYS HIS PRO LEU SEQRES 21 A 457 GLU ILE GLU PRO GLU ARG LEU ARG LYS ILE VAL GLU GLU SEQRES 22 A 457 ARG GLY THR ALA VAL PHE ALA VAL LYS PHE ARG LYS PRO SEQRES 23 A 457 ASP ILE VAL ASP ASP ASN LEU TYR PRO GLN LEU GLU ARG SEQRES 24 A 457 ALA SER ARG LYS ILE PHE GLU PHE LEU GLU ARG GLU ASN SEQRES 25 A 457 PHE MET PRO LEU ARG SER ALA PHE LYS ALA SER GLU GLU SEQRES 26 A 457 PHE CYS TYR LEU LEU PHE GLU CYS GLN ILE LYS GLU ILE SEQRES 27 A 457 SER ARG VAL PHE ARG ARG MET GLY PRO GLN PHE GLU ASP SEQRES 28 A 457 GLU ARG ASN VAL LYS LYS PHE LEU SER ARG ASN ARG ALA SEQRES 29 A 457 PHE ARG PRO PHE ILE GLU ASN GLY ARG TRP TRP ALA PHE SEQRES 30 A 457 GLU MET ARG LYS PHE THR THR PRO GLU GLU GLY VAL ARG SEQRES 31 A 457 SER TYR ALA SER THR HIS TRP HIS THR LEU GLY LYS ASN SEQRES 32 A 457 VAL GLY GLU SER ILE ARG GLU TYR PHE GLU ILE ILE SER SEQRES 33 A 457 GLY GLU LYS LEU PHE LYS GLU PRO VAL THR ALA GLU LEU SEQRES 34 A 457 CYS GLU MET MET GLY VAL LYS ASP SER ASN SER SER SER SEQRES 35 A 457 VAL ASP LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 36 A 457 HIS HIS SEQRES 1 B 34 G G C C G C G G C A G G U SEQRES 2 B 34 U C G A A U C C U G C C G SEQRES 3 B 34 C G A U C G C C SEQRES 1 C 457 MET LYS VAL GLU GLU ILE LEU GLU LYS ALA LEU GLU LEU SEQRES 2 C 457 VAL ILE PRO ASP GLU GLU GLU VAL ARG LYS GLY ARG GLU SEQRES 3 C 457 ALA GLU GLU GLU LEU ARG ARG ARG LEU ASP GLU LEU GLY SEQRES 4 C 457 VAL GLU TYR VAL PHE VAL GLY SER TYR ALA ARG ASN THR SEQRES 5 C 457 TRP LEU LYS GLY SER LEU GLU ILE ASP VAL PHE LEU LEU SEQRES 6 C 457 PHE PRO GLU GLU PHE SER LYS GLU GLU LEU ARG GLU ARG SEQRES 7 C 457 GLY LEU GLU ILE GLY LYS ALA VAL LEU ASP SER TYR GLU SEQRES 8 C 457 ILE ARG TYR ALA GLU HIS PRO TYR VAL HIS GLY VAL VAL SEQRES 9 C 457 LYS GLY VAL GLU VAL ASP VAL VAL PRO CYS TYR LYS LEU SEQRES 10 C 457 LYS GLU PRO LYS ASN ILE LYS SER ALA VAL ASP ARG THR SEQRES 11 C 457 PRO PHE HIS HIS LYS TRP LEU GLU GLY ARG ILE LYS GLY SEQRES 12 C 457 LYS GLU ASN GLU VAL ARG LEU LEU LYS GLY PHE LEU LYS SEQRES 13 C 457 ALA ASN GLY ILE TYR GLY ALA GLU TYR LYS VAL ARG GLY SEQRES 14 C 457 PHE SER GLY TYR LEU CYS GLU LEU LEU ILE VAL PHE TYR SEQRES 15 C 457 GLY SER PHE LEU GLU THR VAL LYS ASN ALA ARG ARG TRP SEQRES 16 C 457 THR ARG ARG THR VAL ILE ASP VAL ALA LYS GLY GLU VAL SEQRES 17 C 457 ARG LYS GLY GLU GLU PHE PHE VAL VAL ASP PRO VAL ASP SEQRES 18 C 457 GLU LYS ARG ASN VAL ALA ALA ASN LEU SER LEU ASP ASN SEQRES 19 C 457 LEU ALA ARG PHE VAL HIS LEU CYS ARG GLU PHE MET GLU SEQRES 20 C 457 ALA PRO SER LEU GLY PHE PHE LYS PRO LYS HIS PRO LEU SEQRES 21 C 457 GLU ILE GLU PRO GLU ARG LEU ARG LYS ILE VAL GLU GLU SEQRES 22 C 457 ARG GLY THR ALA VAL PHE ALA VAL LYS PHE ARG LYS PRO SEQRES 23 C 457 ASP ILE VAL ASP ASP ASN LEU TYR PRO GLN LEU GLU ARG SEQRES 24 C 457 ALA SER ARG LYS ILE PHE GLU PHE LEU GLU ARG GLU ASN SEQRES 25 C 457 PHE MET PRO LEU ARG SER ALA PHE LYS ALA SER GLU GLU SEQRES 26 C 457 PHE CYS TYR LEU LEU PHE GLU CYS GLN ILE LYS GLU ILE SEQRES 27 C 457 SER ARG VAL PHE ARG ARG MET GLY PRO GLN PHE GLU ASP SEQRES 28 C 457 GLU ARG ASN VAL LYS LYS PHE LEU SER ARG ASN ARG ALA SEQRES 29 C 457 PHE ARG PRO PHE ILE GLU ASN GLY ARG TRP TRP ALA PHE SEQRES 30 C 457 GLU MET ARG LYS PHE THR THR PRO GLU GLU GLY VAL ARG SEQRES 31 C 457 SER TYR ALA SER THR HIS TRP HIS THR LEU GLY LYS ASN SEQRES 32 C 457 VAL GLY GLU SER ILE ARG GLU TYR PHE GLU ILE ILE SER SEQRES 33 C 457 GLY GLU LYS LEU PHE LYS GLU PRO VAL THR ALA GLU LEU SEQRES 34 C 457 CYS GLU MET MET GLY VAL LYS ASP SER ASN SER SER SER SEQRES 35 C 457 VAL ASP LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 36 C 457 HIS HIS SEQRES 1 D 34 G G C C G C G G C A G G U SEQRES 2 D 34 U C G A A U C C U G C C G SEQRES 3 D 34 C G A U C G C C HET CTP A 501 41 HET MN A 502 1 HET MN B 101 1 HET MN B 102 1 HET CTP C 501 41 HET MN C 502 1 HET CTP D 101 40 HET MN D 102 1 HET MN D 103 1 HET MN D 104 1 HET MN D 105 1 HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 5 CTP 3(C9 H16 N3 O14 P3) FORMUL 6 MN 8(MN 2+) FORMUL 16 HOH *2(H2 O) HELIX 1 AA1 GLU A 5 ALA A 10 1 6 HELIX 2 AA2 ALA A 10 ILE A 15 1 6 HELIX 3 AA3 ASP A 17 LEU A 38 1 22 HELIX 4 AA4 GLY A 46 ARG A 50 1 5 HELIX 5 AA5 SER A 71 LEU A 87 1 17 HELIX 6 AA6 ALA A 126 ASP A 128 5 3 HELIX 7 AA7 ARG A 129 LYS A 142 1 14 HELIX 8 AA8 LYS A 144 ASN A 158 1 15 HELIX 9 AA9 SER A 171 GLY A 183 1 13 HELIX 10 AB1 SER A 184 ALA A 192 1 9 HELIX 11 AB2 SER A 231 ALA A 248 1 18 HELIX 12 AB3 GLU A 263 GLY A 275 1 13 HELIX 13 AB4 VAL A 289 GLU A 311 1 23 HELIX 14 AB5 ASP A 351 ARG A 361 1 11 HELIX 15 AB6 THR A 384 HIS A 396 1 13 HELIX 16 AB7 TRP A 397 LEU A 400 5 4 HELIX 17 AB8 GLY A 401 TYR A 411 1 11 HELIX 18 AB9 GLY A 417 LYS A 422 1 6 HELIX 19 AC1 VAL A 425 GLY A 434 1 10 HELIX 20 AC2 LYS C 2 ILE C 15 1 14 HELIX 21 AC3 ASP C 17 GLY C 39 1 23 HELIX 22 AC4 GLY C 46 ARG C 50 1 5 HELIX 23 AC5 SER C 71 LEU C 87 1 17 HELIX 24 AC6 ALA C 126 ASP C 128 5 3 HELIX 25 AC7 ARG C 129 ILE C 141 1 13 HELIX 26 AC8 LYS C 144 ASN C 158 1 15 HELIX 27 AC9 SER C 171 GLY C 183 1 13 HELIX 28 AD1 SER C 184 ALA C 192 1 9 HELIX 29 AD2 SER C 231 ALA C 248 1 18 HELIX 30 AD3 SER C 250 LYS C 255 5 6 HELIX 31 AD4 GLU C 263 GLY C 275 1 13 HELIX 32 AD5 VAL C 289 GLU C 311 1 23 HELIX 33 AD6 ASP C 351 ARG C 361 1 11 HELIX 34 AD7 THR C 384 HIS C 396 1 13 HELIX 35 AD8 TRP C 397 LEU C 400 5 4 HELIX 36 AD9 GLY C 401 TYR C 411 1 11 HELIX 37 AE1 GLY C 417 LYS C 422 1 6 HELIX 38 AE2 VAL C 425 GLY C 434 1 10 SHEET 1 AA1 5 TYR A 42 VAL A 45 0 SHEET 2 AA1 5 GLU A 59 PHE A 66 -1 O PHE A 63 N VAL A 43 SHEET 3 AA1 5 VAL A 107 TYR A 115 1 O ASP A 110 N VAL A 62 SHEET 4 AA1 5 VAL A 100 VAL A 104 -1 N VAL A 104 O VAL A 107 SHEET 5 AA1 5 SER A 89 GLU A 91 -1 N GLU A 91 O HIS A 101 SHEET 1 AA2 3 GLU A 207 LYS A 210 0 SHEET 2 AA2 3 THR A 199 ASP A 202 -1 N VAL A 200 O ARG A 209 SHEET 3 AA2 3 PHE A 215 VAL A 217 1 O PHE A 215 N ILE A 201 SHEET 1 AA3 4 PRO A 315 ALA A 322 0 SHEET 2 AA3 4 PHE A 326 CYS A 333 -1 O GLU A 332 N LEU A 316 SHEET 3 AA3 4 ALA A 277 ARG A 284 -1 N PHE A 283 O CYS A 327 SHEET 4 AA3 4 GLU A 413 SER A 416 -1 O GLU A 413 N LYS A 282 SHEET 1 AA4 3 VAL A 341 GLN A 348 0 SHEET 2 AA4 3 ARG A 373 MET A 379 -1 O TRP A 374 N GLY A 346 SHEET 3 AA4 3 PHE A 368 ILE A 369 -1 N PHE A 368 O TRP A 375 SHEET 1 AA5 5 TYR C 42 VAL C 45 0 SHEET 2 AA5 5 GLU C 59 PHE C 66 -1 O PHE C 63 N VAL C 43 SHEET 3 AA5 5 VAL C 107 TYR C 115 1 O ASP C 110 N VAL C 62 SHEET 4 AA5 5 PRO C 98 VAL C 104 -1 N VAL C 100 O VAL C 111 SHEET 5 AA5 5 SER C 89 TYR C 94 -1 N GLU C 91 O HIS C 101 SHEET 1 AA6 3 GLU C 207 LYS C 210 0 SHEET 2 AA6 3 THR C 199 ASP C 202 -1 N VAL C 200 O ARG C 209 SHEET 3 AA6 3 PHE C 215 VAL C 217 1 O PHE C 215 N ILE C 201 SHEET 1 AA7 2 HIS C 258 PRO C 259 0 SHEET 2 AA7 2 ASN C 439 SER C 440 -1 O SER C 440 N HIS C 258 SHEET 1 AA8 4 PRO C 315 ALA C 322 0 SHEET 2 AA8 4 PHE C 326 CYS C 333 -1 O GLU C 332 N LEU C 316 SHEET 3 AA8 4 ALA C 277 ARG C 284 -1 N PHE C 283 O CYS C 327 SHEET 4 AA8 4 GLU C 413 SER C 416 -1 O GLU C 413 N LYS C 282 SHEET 1 AA9 3 VAL C 341 GLN C 348 0 SHEET 2 AA9 3 ARG C 373 MET C 379 -1 O TRP C 374 N GLY C 346 SHEET 3 AA9 3 PRO C 367 ILE C 369 -1 N PHE C 368 O TRP C 375 LINK OE1 GLU A 59 MN MN A 502 1555 1555 1.99 LINK OD2 ASP A 61 MN MN A 502 1555 1555 2.52 LINK O1A CTP A 501 MN MN A 502 1555 1555 2.23 LINK O1B CTP A 501 MN MN A 502 1555 1555 2.46 LINK O2G CTP A 501 MN MN A 502 1555 1555 2.17 LINK N7 G B 1 MN MN B 102 1555 1555 2.26 LINK OP2 U B 13 MN MN B 101 1555 1555 2.66 LINK O4 U B 14 MN MN B 101 1555 1555 2.31 LINK OD2 ASP C 61 MN MN C 502 1555 1555 2.07 LINK O2A CTP C 501 MN MN C 502 1555 1555 2.32 LINK O1B CTP C 501 MN MN C 502 1555 1555 2.09 LINK O2G CTP C 501 MN MN C 502 1555 1555 2.39 LINK N7 G D 11 MN MN D 102 1555 1555 2.74 LINK O4 U D 14 MN MN D 103 1555 1555 2.49 SITE 1 AC1 12 GLY A 46 SER A 47 GLU A 59 ASP A 61 SITE 2 AC1 12 PHE A 63 HIS A 97 TYR A 99 VAL A 112 SITE 3 AC1 12 THR A 130 LYS A 152 TYR A 161 MN A 502 SITE 1 AC2 3 GLU A 59 ASP A 61 CTP A 501 SITE 1 AC3 2 U B 13 U B 14 SITE 1 AC4 1 G B 1 SITE 1 AC5 11 SER C 47 GLU C 59 ASP C 61 PHE C 63 SITE 2 AC5 11 HIS C 97 TYR C 99 THR C 130 HIS C 133 SITE 3 AC5 11 LYS C 152 TYR C 161 MN C 502 SITE 1 AC6 3 GLU C 59 ASP C 61 CTP C 501 SITE 1 AC7 7 ARG C 76 TYR C 94 PRO C 98 G D 1 SITE 2 AC7 7 C D 31 MN D 104 MN D 105 SITE 1 AC8 1 G D 11 SITE 1 AC9 2 U D 13 U D 14 SITE 1 AD1 3 TYR C 94 G D 1 CTP D 101 SITE 1 AD2 1 CTP D 101 CRYST1 111.059 215.602 58.629 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009004 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017056 0.00000