PDB Short entry for 4X4X HEADER IMMUNE SYSTEM 04-DEC-14 4X4X TITLE RETROFITTING ANTIBODIES WITH STABILIZING MUTATIONS. HERCEPTIN SCFV TITLE 2 MUTANT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN VARIABLE HEAVY CHAIN OF HERCEPTIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HUMAN VARIABLE LIGHT CHAIN OF HERCEPTIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS ANTIBODY STABILIZATION MUTATIONS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.B.LANGLEY,B.ROOME,D.CHRIST REVDAT 3 08-JAN-20 4X4X 1 REMARK REVDAT 2 06-SEP-17 4X4X 1 REMARK REVDAT 1 23-DEC-15 4X4X 0 JRNL AUTH D.B.LANGLEY,B.ROOME,D.CHRIST JRNL TITL RETROFITTING ANTIBODIES WITH STABILIZING MUTATIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -2.05000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.039 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3215 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2766 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4399 ; 1.451 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6289 ; 0.788 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 6.842 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;33.619 ;22.810 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;16.110 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.783 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3759 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 778 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1729 ; 1.663 ; 2.965 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1728 ; 1.663 ; 2.965 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2149 ; 2.707 ; 4.436 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2150 ; 2.706 ; 4.436 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1485 ; 1.718 ; 2.975 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1486 ; 1.717 ; 2.975 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2250 ; 2.653 ; 4.425 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3406 ; 4.271 ;23.571 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3407 ; 4.271 ;23.573 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 75.4646 61.7750 130.3557 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.2049 REMARK 3 T33: 0.0234 T12: -0.1049 REMARK 3 T13: 0.0240 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.3896 L22: 0.8233 REMARK 3 L33: 3.5616 L12: 0.8654 REMARK 3 L13: 0.2530 L23: 0.6216 REMARK 3 S TENSOR REMARK 3 S11: -0.2257 S12: 0.1627 S13: -0.1064 REMARK 3 S21: -0.1206 S22: 0.2413 S23: -0.0145 REMARK 3 S31: -0.4661 S32: 0.4132 S33: -0.0156 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): 72.4592 49.1514 113.1015 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.1771 REMARK 3 T33: 0.0329 T12: -0.1048 REMARK 3 T13: 0.0417 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 2.3109 L22: 2.1556 REMARK 3 L33: 4.1650 L12: -0.7057 REMARK 3 L13: 0.5914 L23: 0.8648 REMARK 3 S TENSOR REMARK 3 S11: 0.1587 S12: 0.0687 S13: -0.0918 REMARK 3 S21: -0.1354 S22: 0.0403 S23: 0.0256 REMARK 3 S31: 0.0086 S32: 0.2343 S33: -0.1991 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 118 REMARK 3 ORIGIN FOR THE GROUP (A): 73.1122 60.6494 153.6824 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.0527 REMARK 3 T33: 0.0063 T12: 0.0170 REMARK 3 T13: -0.0287 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.9791 L22: 2.1888 REMARK 3 L33: 3.3542 L12: -0.6039 REMARK 3 L13: 0.9843 L23: -0.2693 REMARK 3 S TENSOR REMARK 3 S11: -0.2258 S12: -0.1257 S13: 0.0483 REMARK 3 S21: 0.1161 S22: 0.1175 S23: -0.0099 REMARK 3 S31: -0.3203 S32: -0.1076 S33: 0.1083 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 106 REMARK 3 ORIGIN FOR THE GROUP (A): 79.4134 70.0002 172.6494 REMARK 3 T TENSOR REMARK 3 T11: 0.4371 T22: 0.1830 REMARK 3 T33: 0.0603 T12: 0.0298 REMARK 3 T13: -0.1152 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 2.7002 L22: 2.3208 REMARK 3 L33: 2.7685 L12: -0.6668 REMARK 3 L13: 0.1877 L23: 0.6090 REMARK 3 S TENSOR REMARK 3 S11: 0.0764 S12: -0.2275 S13: 0.0703 REMARK 3 S21: 0.2258 S22: -0.0931 S23: 0.0786 REMARK 3 S31: -0.2295 S32: -0.2583 S33: 0.0167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4X4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000204978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26621 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 35.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SMALL HEXAGONAL RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE, 100 MM SODIUM REMARK 280 ACETATE (PH 4.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.11667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.23333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.23333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.11667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A -3 REMARK 465 ALA A -2 REMARK 465 SER A -1 REMARK 465 THR A 0 REMARK 465 GLU A 1 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 SER A 135 REMARK 465 THR A 136 REMARK 465 LYS B 107 REMARK 465 PHE C -3 REMARK 465 ALA C -2 REMARK 465 SER C -1 REMARK 465 THR C 0 REMARK 465 GLU C 1 REMARK 465 GLY C 100 REMARK 465 GLY C 101 REMARK 465 ASP C 102 REMARK 465 GLY C 103 REMARK 465 PHE C 104 REMARK 465 TYR C 105 REMARK 465 SER C 120 REMARK 465 GLY C 121 REMARK 465 GLY C 122 REMARK 465 GLY C 123 REMARK 465 GLY C 124 REMARK 465 SER C 125 REMARK 465 GLY C 126 REMARK 465 GLY C 127 REMARK 465 GLY C 128 REMARK 465 GLY C 129 REMARK 465 SER C 130 REMARK 465 GLY C 131 REMARK 465 GLY C 132 REMARK 465 GLY C 133 REMARK 465 GLY C 134 REMARK 465 SER C 135 REMARK 465 THR C 136 REMARK 465 PRO D 40 REMARK 465 GLY D 41 REMARK 465 TYR D 55 REMARK 465 SER D 56 REMARK 465 GLY D 57 REMARK 465 VAL D 58 REMARK 465 PRO D 59 REMARK 465 SER D 60 REMARK 465 LYS D 107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 11 CG CD1 CD2 REMARK 470 VAL A 12 CG1 CG2 REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 ASN A 28 CG OD1 ND2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 SER A 75 OG REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 SER A 119 OG REMARK 470 ASP B 1 CG OD1 OD2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 SER B 12 OG REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 27 CG CD OE1 NE2 REMARK 470 ASN B 30 CG OD1 ND2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 SER B 56 OG REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 SER B 67 OG REMARK 470 THR B 69 OG1 CG2 REMARK 470 PHE B 83 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 100 CG CD OE1 NE2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 ILE B 106 CG1 CG2 CD1 REMARK 470 LYS C 30 CG CD CE NZ REMARK 470 ASP C 31 CG OD1 OD2 REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 LYS C 65 CG CD CE NZ REMARK 470 ASP C 108 CG OD1 OD2 REMARK 470 GLN C 112 CG CD OE1 NE2 REMARK 470 SER C 119 OG REMARK 470 ASP D 1 CG OD1 OD2 REMARK 470 ILE D 2 CG1 CG2 CD1 REMARK 470 SER D 7 OG REMARK 470 SER D 9 OG REMARK 470 SER D 10 OG REMARK 470 VAL D 15 CG1 CG2 REMARK 470 ARG D 18 CG CD NE CZ NH1 NH2 REMARK 470 VAL D 19 CG1 CG2 REMARK 470 THR D 20 OG1 CG2 REMARK 470 ARG D 24 CG CD NE CZ NH1 NH2 REMARK 470 SER D 26 OG REMARK 470 GLN D 27 CG CD OE1 NE2 REMARK 470 ASP D 28 CG OD1 OD2 REMARK 470 VAL D 29 CG1 CG2 REMARK 470 THR D 31 OG1 CG2 REMARK 470 LYS D 39 CG CD CE NZ REMARK 470 LYS D 42 CG CD CE NZ REMARK 470 LYS D 45 CG CD CE NZ REMARK 470 ILE D 48 CG1 CG2 CD1 REMARK 470 ASP D 52 CG OD1 OD2 REMARK 470 LEU D 54 CG CD1 CD2 REMARK 470 SER D 63 OG REMARK 470 SER D 65 OG REMARK 470 ARG D 66 CG CD NE CZ NH1 NH2 REMARK 470 SER D 67 OG REMARK 470 THR D 69 OG1 CG2 REMARK 470 ASP D 70 CG OD1 OD2 REMARK 470 THR D 74 OG1 CG2 REMARK 470 ILE D 75 CG1 CG2 CD1 REMARK 470 SER D 76 OG REMARK 470 SER D 77 OG REMARK 470 LEU D 78 CG CD1 CD2 REMARK 470 GLN D 79 CG CD OE1 NE2 REMARK 470 GLU D 81 CG CD OE1 OE2 REMARK 470 PHE D 83 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN D 100 CG CD OE1 NE2 REMARK 470 LYS D 103 CG CD CE NZ REMARK 470 GLU D 105 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 106 -141.07 46.41 REMARK 500 ASN B 30 72.69 15.51 REMARK 500 ALA B 51 -49.68 76.52 REMARK 500 SER B 67 30.69 -158.49 REMARK 500 THR B 69 79.64 38.64 REMARK 500 SER B 77 89.18 -156.28 REMARK 500 ASN D 30 -122.50 46.01 REMARK 500 ALA D 51 24.62 43.70 REMARK 500 ASP D 52 -39.37 -170.66 REMARK 500 THR D 69 51.57 -102.11 REMARK 500 HIS D 91 50.83 -114.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X4Y RELATED DB: PDB REMARK 900 RELATED ID: 4X4Z RELATED DB: PDB DBREF 4X4X A -3 136 PDB 4X4X 4X4X -3 136 DBREF 4X4X B 1 107 PDB 4X4X 4X4X 1 107 DBREF 4X4X C -3 136 PDB 4X4X 4X4X -3 136 DBREF 4X4X D 1 107 PDB 4X4X 4X4X 1 107 SEQRES 1 A 140 PHE ALA SER THR GLU VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 A 140 GLY LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 A 140 ALA ALA SER GLY PHE ASN ILE LYS ASP THR TYR ILE HIS SEQRES 4 A 140 TRP VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL SEQRES 5 A 140 ALA ARG ILE TYR PRO THR ASN GLY TYR THR ARG TYR ALA SEQRES 6 A 140 ASP SER VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SEQRES 7 A 140 SER LYS ASN THR ALA TYR LEU GLN MET ASN SER LEU ARG SEQRES 8 A 140 ALA GLU ASP THR ALA VAL TYR TYR CYS SER ARG TRP GLY SEQRES 9 A 140 GLY ASP GLY PHE TYR ALA MET ASP VAL TRP GLY GLN GLY SEQRES 10 A 140 THR LEU VAL THR VAL SER SER GLY GLY GLY GLY SER GLY SEQRES 11 A 140 GLY GLY GLY SER GLY GLY GLY GLY SER THR SEQRES 1 B 107 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 B 107 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 107 GLN ASP VAL ASN THR ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 B 107 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA ASP SEQRES 5 B 107 PHE LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 107 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 B 107 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN HIS SEQRES 8 B 107 TYR THR THR PRO PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 B 107 GLU ILE LYS SEQRES 1 C 140 PHE ALA SER THR GLU VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 C 140 GLY LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS SEQRES 3 C 140 ALA ALA SER GLY PHE ASN ILE LYS ASP THR TYR ILE HIS SEQRES 4 C 140 TRP VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL SEQRES 5 C 140 ALA ARG ILE TYR PRO THR ASN GLY TYR THR ARG TYR ALA SEQRES 6 C 140 ASP SER VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SEQRES 7 C 140 SER LYS ASN THR ALA TYR LEU GLN MET ASN SER LEU ARG SEQRES 8 C 140 ALA GLU ASP THR ALA VAL TYR TYR CYS SER ARG TRP GLY SEQRES 9 C 140 GLY ASP GLY PHE TYR ALA MET ASP VAL TRP GLY GLN GLY SEQRES 10 C 140 THR LEU VAL THR VAL SER SER GLY GLY GLY GLY SER GLY SEQRES 11 C 140 GLY GLY GLY SER GLY GLY GLY GLY SER THR SEQRES 1 D 107 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 D 107 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 D 107 GLN ASP VAL ASN THR ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 D 107 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA ASP SEQRES 5 D 107 PHE LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 D 107 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 D 107 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN HIS SEQRES 8 D 107 TYR THR THR PRO PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 D 107 GLU ILE LYS FORMUL 5 HOH *12(H2 O) HELIX 1 AA1 ASN A 28 THR A 32 5 5 HELIX 2 AA2 ARG A 87 THR A 91 5 5 HELIX 3 AA3 GLY A 100 PHE A 104 5 5 HELIX 4 AA4 GLN B 79 PHE B 83 5 5 HELIX 5 AA5 ASN C 28 THR C 32 5 5 HELIX 6 AA6 ARG C 87 THR C 91 5 5 HELIX 7 AA7 GLN D 79 PHE D 83 5 5 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 114 VAL A 118 1 O THR A 117 N VAL A 12 SHEET 3 AA2 6 ALA A 92 ARG A 98 -1 N ALA A 92 O VAL A 116 SHEET 4 AA2 6 ILE A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 GLU A 46 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O ARG A 59 N ARG A 50 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 THR A 114 VAL A 118 1 O THR A 117 N VAL A 12 SHEET 3 AA3 4 ALA A 92 ARG A 98 -1 N ALA A 92 O VAL A 116 SHEET 4 AA3 4 VAL A 109 TRP A 110 -1 O VAL A 109 N ARG A 98 SHEET 1 AA4 4 MET B 4 SER B 7 0 SHEET 2 AA4 4 VAL B 19 ALA B 25 -1 O THR B 22 N SER B 7 SHEET 3 AA4 4 PHE B 71 ILE B 75 -1 O PHE B 71 N CYS B 23 SHEET 4 AA4 4 PHE B 62 ARG B 66 -1 N SER B 63 O THR B 74 SHEET 1 AA5 6 SER B 10 SER B 12 0 SHEET 2 AA5 6 THR B 102 GLU B 105 1 O GLU B 105 N LEU B 11 SHEET 3 AA5 6 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA5 6 VAL B 33 GLN B 38 -1 N ALA B 34 O GLN B 89 SHEET 5 AA5 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA5 6 PHE B 53 LEU B 54 -1 O PHE B 53 N TYR B 49 SHEET 1 AA6 4 SER B 10 SER B 12 0 SHEET 2 AA6 4 THR B 102 GLU B 105 1 O GLU B 105 N LEU B 11 SHEET 3 AA6 4 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA6 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 AA7 4 GLN C 3 GLY C 8 0 SHEET 2 AA7 4 LEU C 18 SER C 25 -1 O ALA C 23 N VAL C 5 SHEET 3 AA7 4 THR C 78 MET C 83 -1 O ALA C 79 N CYS C 22 SHEET 4 AA7 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLN C 82 SHEET 1 AA8 6 LEU C 11 VAL C 12 0 SHEET 2 AA8 6 THR C 114 VAL C 118 1 O THR C 117 N VAL C 12 SHEET 3 AA8 6 ALA C 92 ARG C 98 -1 N TYR C 94 O THR C 114 SHEET 4 AA8 6 ILE C 34 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 AA8 6 GLU C 46 TYR C 52 -1 O GLU C 46 N ARG C 38 SHEET 6 AA8 6 TYR C 57 TYR C 60 -1 O TYR C 57 N TYR C 52 SHEET 1 AA9 4 LEU C 11 VAL C 12 0 SHEET 2 AA9 4 THR C 114 VAL C 118 1 O THR C 117 N VAL C 12 SHEET 3 AA9 4 ALA C 92 ARG C 98 -1 N TYR C 94 O THR C 114 SHEET 4 AA9 4 VAL C 109 TRP C 110 -1 O VAL C 109 N ARG C 98 SHEET 1 AB1 4 MET D 4 SER D 7 0 SHEET 2 AB1 4 VAL D 19 ALA D 25 -1 O ARG D 24 N THR D 5 SHEET 3 AB1 4 PHE D 71 ILE D 75 -1 O LEU D 73 N ILE D 21 SHEET 4 AB1 4 PHE D 62 ARG D 66 -1 N SER D 63 O THR D 74 SHEET 1 AB2 5 SER D 10 SER D 12 0 SHEET 2 AB2 5 THR D 102 GLU D 105 1 O GLU D 105 N LEU D 11 SHEET 3 AB2 5 ALA D 84 GLN D 90 -1 N ALA D 84 O VAL D 104 SHEET 4 AB2 5 VAL D 33 GLN D 38 -1 N ALA D 34 O GLN D 89 SHEET 5 AB2 5 PRO D 44 ILE D 48 -1 O LEU D 47 N TRP D 35 SHEET 1 AB3 4 SER D 10 SER D 12 0 SHEET 2 AB3 4 THR D 102 GLU D 105 1 O GLU D 105 N LEU D 11 SHEET 3 AB3 4 ALA D 84 GLN D 90 -1 N ALA D 84 O VAL D 104 SHEET 4 AB3 4 THR D 97 PHE D 98 -1 O THR D 97 N GLN D 90 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.06 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.08 SSBOND 3 CYS C 22 CYS C 96 1555 1555 2.01 SSBOND 4 CYS D 23 CYS D 88 1555 1555 2.09 CISPEP 1 SER B 7 PRO B 8 0 -5.25 CISPEP 2 GLY B 68 THR B 69 0 -2.45 CISPEP 3 THR B 69 ASP B 70 0 26.98 CISPEP 4 THR B 94 PRO B 95 0 -4.59 CISPEP 5 SER D 7 PRO D 8 0 1.63 CISPEP 6 THR D 94 PRO D 95 0 -5.17 CRYST1 91.190 91.190 114.350 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010966 0.006331 0.000000 0.00000 SCALE2 0.000000 0.012663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008745 0.00000