PDB Short entry for 4XB0 HEADER TRANSFERASE 16-DEC-14 4XB0 TITLE STRUCTURE OF THE PLK2 POLO-BOX DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: POLO-BOX DOMAIN, UNP RESIDUES 468-685; COMPND 5 SYNONYM: POLO-LIKE KINASE 2,HPLK2,SERINE/THREONINE-PROTEIN KINASE COMPND 6 SNK,HSNK,SERUM-INDUCIBLE KINASE; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK2, SNK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL KEYWDS POLO-BOX DOMAIN, POLO-LIKE KINASE 2, PLK2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.KIM,B.KU,S.J.KIM REVDAT 4 03-APR-24 4XB0 1 REMARK REVDAT 3 20-MAR-24 4XB0 1 JRNL REMARK REVDAT 2 24-FEB-16 4XB0 1 JRNL REVDAT 1 06-MAY-15 4XB0 0 JRNL AUTH J.H.KIM,B.KU,K.S.LEE,S.J.KIM JRNL TITL STRUCTURAL ANALYSIS OF THE POLO-BOX DOMAIN OF HUMAN JRNL TITL 2 POLO-LIKE KINASE 2 JRNL REF PROTEINS V. 83 1201 2015 JRNL REFN ESSN 1097-0134 JRNL PMID 25846005 JRNL DOI 10.1002/PROT.24804 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.760 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.9230 - 6.1602 1.00 1274 140 0.1966 0.2494 REMARK 3 2 6.1602 - 4.8991 1.00 1241 137 0.2222 0.2517 REMARK 3 3 4.8991 - 4.2826 1.00 1223 138 0.1721 0.2007 REMARK 3 4 4.2826 - 3.8923 1.00 1225 137 0.1917 0.2281 REMARK 3 5 3.8923 - 3.6141 1.00 1208 135 0.2186 0.2621 REMARK 3 6 3.6141 - 3.4014 1.00 1214 130 0.2380 0.2767 REMARK 3 7 3.4014 - 3.2314 1.00 1206 135 0.2499 0.2691 REMARK 3 8 3.2314 - 3.0909 1.00 1212 139 0.2671 0.3181 REMARK 3 9 3.0909 - 2.9721 1.00 1190 131 0.2733 0.3036 REMARK 3 10 2.9721 - 2.8696 0.99 1193 132 0.2862 0.3260 REMARK 3 11 2.8696 - 2.7800 0.99 1216 134 0.3107 0.3492 REMARK 3 12 2.7800 - 2.7006 0.99 1197 134 0.3368 0.3640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3522 REMARK 3 ANGLE : 1.048 4774 REMARK 3 CHIRALITY : 0.039 528 REMARK 3 PLANARITY : 0.004 606 REMARK 3 DIHEDRAL : 15.952 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 22.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 48.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: THE POLO-BOX DOMAIN OF PLK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26 M SODIUM PHOSPHATE, 0.14 M REMARK 280 POTASSIUM PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.14600 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 76.14600 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 76.14600 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 76.14600 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 76.14600 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 76.14600 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 76.14600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.14600 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 76.14600 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 76.14600 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 76.14600 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 76.14600 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 76.14600 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 76.14600 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 76.14600 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 76.14600 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 76.14600 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 76.14600 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 76.14600 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 76.14600 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 76.14600 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 76.14600 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 76.14600 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 76.14600 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 76.14600 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 76.14600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 468 REMARK 465 GLN A 682 REMARK 465 ARG A 683 REMARK 465 CYS A 684 REMARK 465 ASN A 685 REMARK 465 MET B 468 REMARK 465 GLN B 682 REMARK 465 ARG B 683 REMARK 465 CYS B 684 REMARK 465 ASN B 685 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 577 OE2 GLU A 581 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 514 -57.77 -123.35 REMARK 500 LYS A 541 18.12 59.65 REMARK 500 GLN A 637 -90.19 -83.06 REMARK 500 ASN A 638 -73.90 -103.26 REMARK 500 TYR B 514 -61.14 -122.60 REMARK 500 THR B 593 -80.85 -83.27 REMARK 500 PRO B 598 98.90 -62.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 593 ASP A 594 -148.32 REMARK 500 ASP A 594 ILE A 595 -147.59 REMARK 500 GLN B 637 ASN B 638 -121.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 703 DBREF 4XB0 A 468 685 UNP Q9NYY3 PLK2_HUMAN 468 685 DBREF 4XB0 B 468 685 UNP Q9NYY3 PLK2_HUMAN 468 685 SEQRES 1 A 218 MET GLY SER VAL ALA ASP THR VAL ALA ARG VAL LEU ARG SEQRES 2 A 218 GLY CYS LEU GLU ASN MET PRO GLU ALA ASP CYS ILE PRO SEQRES 3 A 218 LYS GLU GLN LEU SER THR SER PHE GLN TRP VAL THR LYS SEQRES 4 A 218 TRP VAL ASP TYR SER ASN LYS TYR GLY PHE GLY TYR GLN SEQRES 5 A 218 LEU SER ASP HIS THR VAL GLY VAL LEU PHE ASN ASN GLY SEQRES 6 A 218 ALA HIS MET SER LEU LEU PRO ASP LYS LYS THR VAL HIS SEQRES 7 A 218 TYR TYR ALA GLU LEU GLY GLN CYS SER VAL PHE PRO ALA SEQRES 8 A 218 THR ASP ALA PRO GLU GLN PHE ILE SER GLN VAL THR VAL SEQRES 9 A 218 LEU LYS TYR PHE SER HIS TYR MET GLU GLU ASN LEU MET SEQRES 10 A 218 ASP GLY GLY ASP LEU PRO SER VAL THR ASP ILE ARG ARG SEQRES 11 A 218 PRO ARG LEU TYR LEU LEU GLN TRP LEU LYS SER ASP LYS SEQRES 12 A 218 ALA LEU MET MET LEU PHE ASN ASP GLY THR PHE GLN VAL SEQRES 13 A 218 ASN PHE TYR HIS ASP HIS THR LYS ILE ILE ILE CYS SER SEQRES 14 A 218 GLN ASN GLU GLU TYR LEU LEU THR TYR ILE ASN GLU ASP SEQRES 15 A 218 ARG ILE SER THR THR PHE ARG LEU THR THR LEU LEU MET SEQRES 16 A 218 SER GLY CYS SER SER GLU LEU LYS ASN ARG MET GLU TYR SEQRES 17 A 218 ALA LEU ASN MET LEU LEU GLN ARG CYS ASN SEQRES 1 B 218 MET GLY SER VAL ALA ASP THR VAL ALA ARG VAL LEU ARG SEQRES 2 B 218 GLY CYS LEU GLU ASN MET PRO GLU ALA ASP CYS ILE PRO SEQRES 3 B 218 LYS GLU GLN LEU SER THR SER PHE GLN TRP VAL THR LYS SEQRES 4 B 218 TRP VAL ASP TYR SER ASN LYS TYR GLY PHE GLY TYR GLN SEQRES 5 B 218 LEU SER ASP HIS THR VAL GLY VAL LEU PHE ASN ASN GLY SEQRES 6 B 218 ALA HIS MET SER LEU LEU PRO ASP LYS LYS THR VAL HIS SEQRES 7 B 218 TYR TYR ALA GLU LEU GLY GLN CYS SER VAL PHE PRO ALA SEQRES 8 B 218 THR ASP ALA PRO GLU GLN PHE ILE SER GLN VAL THR VAL SEQRES 9 B 218 LEU LYS TYR PHE SER HIS TYR MET GLU GLU ASN LEU MET SEQRES 10 B 218 ASP GLY GLY ASP LEU PRO SER VAL THR ASP ILE ARG ARG SEQRES 11 B 218 PRO ARG LEU TYR LEU LEU GLN TRP LEU LYS SER ASP LYS SEQRES 12 B 218 ALA LEU MET MET LEU PHE ASN ASP GLY THR PHE GLN VAL SEQRES 13 B 218 ASN PHE TYR HIS ASP HIS THR LYS ILE ILE ILE CYS SER SEQRES 14 B 218 GLN ASN GLU GLU TYR LEU LEU THR TYR ILE ASN GLU ASP SEQRES 15 B 218 ARG ILE SER THR THR PHE ARG LEU THR THR LEU LEU MET SEQRES 16 B 218 SER GLY CYS SER SER GLU LEU LYS ASN ARG MET GLU TYR SEQRES 17 B 218 ALA LEU ASN MET LEU LEU GLN ARG CYS ASN HET PO4 B 701 5 HET CL B 702 1 HET CL B 703 1 HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *22(H2 O) HELIX 1 AA1 GLY A 469 ASN A 485 1 17 HELIX 2 AA2 PHE A 565 LEU A 583 1 19 HELIX 3 AA3 LEU A 657 GLY A 664 1 8 HELIX 4 AA4 SER A 666 LEU A 681 1 16 HELIX 5 AA5 SER B 470 ASN B 485 1 16 HELIX 6 AA6 PHE B 565 GLU B 580 1 16 HELIX 7 AA7 LEU B 657 GLY B 664 1 8 HELIX 8 AA8 SER B 666 LEU B 681 1 16 SHEET 1 AA1 6 VAL A 504 TYR A 510 0 SHEET 2 AA1 6 GLY A 515 LEU A 520 -1 O GLY A 517 N VAL A 508 SHEET 3 AA1 6 VAL A 525 PHE A 529 -1 O LEU A 528 N PHE A 516 SHEET 4 AA1 6 HIS A 534 LEU A 537 -1 O LEU A 537 N VAL A 525 SHEET 5 AA1 6 THR A 543 TYR A 547 -1 O HIS A 545 N SER A 536 SHEET 6 AA1 6 CYS A 553 PRO A 557 -1 O SER A 554 N TYR A 546 SHEET 1 AA212 SER A 652 ARG A 656 0 SHEET 2 AA212 TYR A 641 ILE A 646 -1 N LEU A 643 O PHE A 655 SHEET 3 AA212 LYS A 631 SER A 636 -1 N ILE A 633 O THR A 644 SHEET 4 AA212 PHE A 621 PHE A 625 -1 N PHE A 621 O ILE A 634 SHEET 5 AA212 ALA A 611 PHE A 616 -1 N LEU A 612 O ASN A 624 SHEET 6 AA212 LEU A 602 SER A 608 -1 N GLN A 604 O LEU A 615 SHEET 7 AA212 LEU B 602 SER B 608 -1 O LYS B 607 N LYS A 607 SHEET 8 AA212 ALA B 611 PHE B 616 -1 O MET B 613 N LEU B 606 SHEET 9 AA212 PHE B 621 PHE B 625 -1 O ASN B 624 N LEU B 612 SHEET 10 AA212 LYS B 631 GLN B 637 -1 O ILE B 634 N PHE B 621 SHEET 11 AA212 GLU B 640 ILE B 646 -1 O THR B 644 N ILE B 633 SHEET 12 AA212 SER B 652 ARG B 656 -1 O THR B 653 N TYR B 645 SHEET 1 AA3 6 VAL B 504 TYR B 510 0 SHEET 2 AA3 6 GLY B 515 LEU B 520 -1 O GLY B 517 N VAL B 508 SHEET 3 AA3 6 VAL B 525 PHE B 529 -1 O GLY B 526 N TYR B 518 SHEET 4 AA3 6 HIS B 534 LEU B 537 -1 O LEU B 537 N VAL B 525 SHEET 5 AA3 6 THR B 543 TYR B 547 -1 O HIS B 545 N SER B 536 SHEET 6 AA3 6 CYS B 553 PRO B 557 -1 O SER B 554 N TYR B 546 CISPEP 1 ARG A 597 PRO A 598 0 0.18 CISPEP 2 GLY B 587 ASP B 588 0 2.88 CISPEP 3 ASN B 638 GLU B 639 0 -0.73 SITE 1 AC1 5 TRP B 507 ASN B 624 PHE B 625 HIS B 629 SITE 2 AC1 5 LYS B 631 SITE 1 AC2 2 LYS B 513 TYR B 574 SITE 1 AC3 1 LYS B 670 CRYST1 152.292 152.292 152.292 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006566 0.00000