PDB Short entry for 4XDE HEADER BLOOD CLOTTING 19-DEC-14 4XDE TITLE COAGULATION FACTOR XII PROTEASE DOMAIN CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XII; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEASE DOMAIN, UNP RESIDUES 373-615; COMPND 5 SYNONYM: HAGEMAN FACTOR,HAF; COMPND 6 EC: 3.4.21.38; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F12; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SCHNEIDER 2 (S2); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMT-PURO KEYWDS FACTOR XII, CATALYTIC DOMAIN, ZYMOGENS, HYDROLASE, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR M.PATHAK,P.WILMANN,J.AWFORD,C.LI,P.M.FISHER,I.DREVENY,L.V.DEKKER, AUTHOR 2 J.EMSLEY REVDAT 4 10-JAN-24 4XDE 1 REMARK REVDAT 3 28-OCT-15 4XDE 1 JRNL REVDAT 2 15-APR-15 4XDE 1 JRNL REVDAT 1 04-FEB-15 4XDE 0 JRNL AUTH M.PATHAK,P.WILMANN,J.AWFORD,C.LI,B.K.HAMAD,P.M.FISCHER, JRNL AUTH 2 I.DREVENY,L.V.DEKKER,J.EMSLEY JRNL TITL COAGULATION FACTOR XII PROTEASE DOMAIN CRYSTAL STRUCTURE. JRNL REF J.THROMB.HAEMOST. V. 13 580 2015 JRNL REFN ESSN 1538-7836 JRNL PMID 25604127 JRNL DOI 10.1111/JTH.12849 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 15301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 814 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 953 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1829 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -1.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.251 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1903 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1729 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2600 ; 1.855 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3962 ; 3.851 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.497 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;35.225 ;23.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;18.534 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.758 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2194 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 445 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16670 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 30.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YBW WITH 44% IDENTITY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M AMMONIUM SULPHATE, 0.05 M TRI REMARK 280 -SODIUM CITRATE, 3%(W/V) ISOPROPANOL., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.07250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.06300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.06300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 9.53625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.06300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.06300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.60875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.06300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.06300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 9.53625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.06300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.06300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.60875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.07250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 352 REMARK 465 SER A 353 REMARK 465 VAL A 354 REMARK 465 VAL A 355 REMARK 465 GLY A 356 REMARK 465 GLY A 357 REMARK 465 LEU A 358 REMARK 465 GLY A 600 REMARK 465 THR A 601 REMARK 465 ARG A 602 REMARK 465 HIS A 603 REMARK 465 HIS A 604 REMARK 465 HIS A 605 REMARK 465 HIS A 606 REMARK 465 HIS A 607 REMARK 465 HIS A 608 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 413 N ASN A 414 1.65 REMARK 500 O ASN A 414 N HIS A 415 1.79 REMARK 500 CA ARG A 413 N ASN A 414 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 413 C ASN A 414 N -0.763 REMARK 500 ASN A 414 C HIS A 415 N -0.306 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 361 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 ASN A 414 CA - C - N ANGL. DEV. = 16.0 DEGREES REMARK 500 ASN A 414 O - C - N ANGL. DEV. = -17.1 DEGREES REMARK 500 THR A 537 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 ASP A 538 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 414 32.50 32.27 REMARK 500 CYS A 456 -89.09 -110.59 REMARK 500 ALA A 493 73.31 47.76 REMARK 500 VAL A 518 -87.05 -109.49 REMARK 500 THR A 537 45.51 31.38 REMARK 500 GLN A 553 -50.78 70.43 REMARK 500 ALA A 554 13.47 -69.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 414 -11.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 703 DBREF 4XDE A 354 596 UNP P00748 FA12_HUMAN 373 615 SEQADV 4XDE ARG A 352 UNP P00748 EXPRESSION TAG SEQADV 4XDE SER A 353 UNP P00748 EXPRESSION TAG SEQADV 4XDE SER A 467 UNP P00748 CYS 486 ENGINEERED MUTATION SEQADV 4XDE HIS A 597 UNP P00748 EXPRESSION TAG SEQADV 4XDE HIS A 598 UNP P00748 EXPRESSION TAG SEQADV 4XDE THR A 599 UNP P00748 EXPRESSION TAG SEQADV 4XDE GLY A 600 UNP P00748 EXPRESSION TAG SEQADV 4XDE THR A 601 UNP P00748 EXPRESSION TAG SEQADV 4XDE ARG A 602 UNP P00748 EXPRESSION TAG SEQADV 4XDE HIS A 603 UNP P00748 EXPRESSION TAG SEQADV 4XDE HIS A 604 UNP P00748 EXPRESSION TAG SEQADV 4XDE HIS A 605 UNP P00748 EXPRESSION TAG SEQADV 4XDE HIS A 606 UNP P00748 EXPRESSION TAG SEQADV 4XDE HIS A 607 UNP P00748 EXPRESSION TAG SEQADV 4XDE HIS A 608 UNP P00748 EXPRESSION TAG SEQRES 1 A 257 ARG SER VAL VAL GLY GLY LEU VAL ALA LEU ARG GLY ALA SEQRES 2 A 257 HIS PRO TYR ILE ALA ALA LEU TYR TRP GLY HIS SER PHE SEQRES 3 A 257 CYS ALA GLY SER LEU ILE ALA PRO CYS TRP VAL LEU THR SEQRES 4 A 257 ALA ALA HIS CYS LEU GLN ASP ARG PRO ALA PRO GLU ASP SEQRES 5 A 257 LEU THR VAL VAL LEU GLY GLN GLU ARG ARG ASN HIS SER SEQRES 6 A 257 CYS GLU PRO CYS GLN THR LEU ALA VAL ARG SER TYR ARG SEQRES 7 A 257 LEU HIS GLU ALA PHE SER PRO VAL SER TYR GLN HIS ASP SEQRES 8 A 257 LEU ALA LEU LEU ARG LEU GLN GLU ASP ALA ASP GLY SER SEQRES 9 A 257 CYS ALA LEU LEU SER PRO TYR VAL GLN PRO VAL SER LEU SEQRES 10 A 257 PRO SER GLY ALA ALA ARG PRO SER GLU THR THR LEU CYS SEQRES 11 A 257 GLN VAL ALA GLY TRP GLY HIS GLN PHE GLU GLY ALA GLU SEQRES 12 A 257 GLU TYR ALA SER PHE LEU GLN GLU ALA GLN VAL PRO PHE SEQRES 13 A 257 LEU SER LEU GLU ARG CYS SER ALA PRO ASP VAL HIS GLY SEQRES 14 A 257 SER SER ILE LEU PRO GLY MET LEU CYS ALA GLY PHE LEU SEQRES 15 A 257 GLU GLY GLY THR ASP ALA CYS GLN GLY ASP SER GLY GLY SEQRES 16 A 257 PRO LEU VAL CYS GLU ASP GLN ALA ALA GLU ARG ARG LEU SEQRES 17 A 257 THR LEU GLN GLY ILE ILE SER TRP GLY SER GLY CYS GLY SEQRES 18 A 257 ASP ARG ASN LYS PRO GLY VAL TYR THR ASP VAL ALA TYR SEQRES 19 A 257 TYR LEU ALA TRP ILE ARG GLU HIS THR VAL SER HIS HIS SEQRES 20 A 257 THR GLY THR ARG HIS HIS HIS HIS HIS HIS HET IPA A 701 4 HET IPA A 702 4 HET FLC A 703 13 HETNAM IPA ISOPROPYL ALCOHOL HETNAM FLC CITRATE ANION HETSYN IPA 2-PROPANOL FORMUL 2 IPA 2(C3 H8 O) FORMUL 4 FLC C6 H5 O7 3- FORMUL 5 HOH *97(H2 O) HELIX 1 AA1 ALA A 391 GLN A 396 5 6 HELIX 2 AA2 ALA A 400 ASP A 403 5 4 HELIX 3 AA3 ALA A 493 ALA A 497 5 5 HELIX 4 AA4 SER A 509 SER A 514 1 6 HELIX 5 AA5 HIS A 519 ILE A 523 5 5 HELIX 6 AA6 TYR A 586 HIS A 593 1 8 SHEET 1 AA1 7 ILE A 368 TRP A 373 0 SHEET 2 AA1 7 SER A 376 ALA A 384 -1 O CYS A 378 N LEU A 371 SHEET 3 AA1 7 TRP A 387 THR A 390 -1 O LEU A 389 N SER A 381 SHEET 4 AA1 7 ALA A 444 LEU A 448 -1 O LEU A 446 N VAL A 388 SHEET 5 AA1 7 GLN A 421 LEU A 430 -1 N SER A 427 O ARG A 447 SHEET 6 AA1 7 THR A 405 LEU A 408 -1 N VAL A 406 O LEU A 423 SHEET 7 AA1 7 ILE A 368 TRP A 373 -1 N ALA A 370 O VAL A 407 SHEET 1 AA2 7 LEU A 480 GLY A 485 0 SHEET 2 AA2 7 GLN A 501 LEU A 508 -1 O GLN A 501 N GLY A 485 SHEET 3 AA2 7 MET A 527 ALA A 530 -1 O CYS A 529 N LEU A 508 SHEET 4 AA2 7 GLY A 578 ASP A 582 -1 O TYR A 580 N LEU A 528 SHEET 5 AA2 7 LEU A 559 TRP A 567 -1 N TRP A 567 O VAL A 579 SHEET 6 AA2 7 PRO A 547 GLU A 551 -1 N CYS A 550 O THR A 560 SHEET 7 AA2 7 LEU A 480 GLY A 485 -1 N GLN A 482 O VAL A 549 SSBOND 1 CYS A 378 CYS A 394 1555 1555 2.10 SSBOND 2 CYS A 386 CYS A 456 1555 1555 2.10 SSBOND 3 CYS A 417 CYS A 420 1555 1555 2.10 SSBOND 4 CYS A 481 CYS A 550 1555 1555 2.04 SSBOND 5 CYS A 513 CYS A 529 1555 1555 2.03 SSBOND 6 CYS A 540 CYS A 571 1555 1555 2.06 SITE 1 AC1 2 LEU A 371 CYS A 394 SITE 1 AC2 7 TRP A 373 SER A 376 ASP A 397 LEU A 524 SITE 2 AC2 7 PRO A 525 HOH A 810 HOH A 853 SITE 1 AC3 6 VAL A 437 SER A 438 TYR A 439 SER A 522 SITE 2 AC3 6 TRP A 567 HOH A 861 CRYST1 124.126 124.126 38.145 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008056 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026216 0.00000