PDB Short entry for 4XH9 HEADER SIGNALING PROTEIN 05-JAN-15 4XH9 TITLE CRYSTAL STRUCTURE OF HUMAN RHOA IN COMPLEX WITH DH/PH FRAGMENT OF THE TITLE 2 GUANINE NUCLEOTIDE EXCHANGE FACTOR NET1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROEPITHELIAL CELL-TRANSFORMING GENE 1 PROTEIN; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 149-501; COMPND 5 SYNONYM: PROTO-ONCOGENE P65 NET1,RHO GUANINE NUCLEOTIDE EXCHANGE COMPND 6 FACTOR 8; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 10 CHAIN: B, E; COMPND 11 FRAGMENT: UNP RESIDUES 2-180; COMPND 12 SYNONYM: RHO CDNA CLONE 12,H12; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NET1, ARHGEF8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 536056; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: RHOA, ARH12, ARHA, RHO12; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH1; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 536056; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS RHOA GTPASE, SIGNALING PROTEIN, ACTIVATOR, GUANINE NUCLEOTIDE KEYWDS 2 EXCHANGE FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR C.GARCIA,P.PETIT,J.A.BOUTIN,G.FERRY,L.VUILLARD REVDAT 4 10-JAN-24 4XH9 1 REMARK REVDAT 3 12-JUN-19 4XH9 1 AUTHOR REVDAT 2 20-JUN-18 4XH9 1 JRNL REVDAT 1 14-JAN-15 4XH9 0 JRNL AUTH A.P.PETIT,C.GARCIA-PETIT,J.A.BUEREN-CALABUIG,L.M.VUILLARD, JRNL AUTH 2 G.FERRY,J.A.BOUTIN JRNL TITL A STRUCTURAL STUDY OF THE COMPLEX BETWEEN NEUROEPITHELIAL JRNL TITL 2 CELL TRANSFORMING GENE 1 (NET1) AND RHOA REVEALS A POTENTIAL JRNL TITL 3 ANTICANCER DRUG HOT SPOT. JRNL REF J. BIOL. CHEM. V. 293 9064 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29695506 JRNL DOI 10.1074/JBC.RA117.001123 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1702) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 83896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6927 - 6.2030 0.95 2605 137 0.1895 0.2087 REMARK 3 2 6.2030 - 4.9280 0.99 2671 140 0.1949 0.2383 REMARK 3 3 4.9280 - 4.3064 0.99 2666 141 0.1505 0.1569 REMARK 3 4 4.3064 - 3.9133 0.99 2632 138 0.1603 0.1719 REMARK 3 5 3.9133 - 3.6331 0.99 2665 140 0.1617 0.1890 REMARK 3 6 3.6331 - 3.4191 0.99 2652 140 0.1781 0.2122 REMARK 3 7 3.4191 - 3.2480 0.99 2670 140 0.1888 0.2121 REMARK 3 8 3.2480 - 3.1067 1.00 2659 140 0.1905 0.2207 REMARK 3 9 3.1067 - 2.9872 1.00 2645 140 0.1870 0.2058 REMARK 3 10 2.9872 - 2.8841 1.00 2668 140 0.2017 0.2391 REMARK 3 11 2.8841 - 2.7940 1.00 2676 141 0.1993 0.2396 REMARK 3 12 2.7940 - 2.7142 1.00 2641 139 0.2063 0.2279 REMARK 3 13 2.7142 - 2.6427 1.00 2688 141 0.2000 0.1956 REMARK 3 14 2.6427 - 2.5783 1.00 2642 139 0.1978 0.2387 REMARK 3 15 2.5783 - 2.5197 1.00 2678 141 0.1926 0.2091 REMARK 3 16 2.5197 - 2.4661 1.00 2629 139 0.1920 0.2323 REMARK 3 17 2.4661 - 2.4168 1.00 2679 141 0.1981 0.2528 REMARK 3 18 2.4168 - 2.3712 1.00 2656 140 0.1974 0.2192 REMARK 3 19 2.3712 - 2.3288 1.00 2662 140 0.1996 0.2652 REMARK 3 20 2.3288 - 2.2894 1.00 2677 140 0.2000 0.2344 REMARK 3 21 2.2894 - 2.2524 1.00 2611 138 0.2023 0.2403 REMARK 3 22 2.2524 - 2.2178 1.00 2709 143 0.2019 0.2475 REMARK 3 23 2.2178 - 2.1852 1.00 2638 138 0.2058 0.2338 REMARK 3 24 2.1852 - 2.1544 1.00 2630 139 0.2022 0.2420 REMARK 3 25 2.1544 - 2.1253 1.00 2676 141 0.2041 0.2526 REMARK 3 26 2.1253 - 2.0977 1.00 2670 140 0.2114 0.2782 REMARK 3 27 2.0977 - 2.0715 1.00 2668 141 0.2200 0.2334 REMARK 3 28 2.0715 - 2.0465 1.00 2666 140 0.2300 0.2972 REMARK 3 29 2.0465 - 2.0227 1.00 2652 140 0.2343 0.2709 REMARK 3 30 2.0227 - 2.0000 1.00 2621 137 0.2409 0.3114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 8473 REMARK 3 ANGLE : 0.902 11455 REMARK 3 CHIRALITY : 0.033 1268 REMARK 3 PLANARITY : 0.006 1488 REMARK 3 DIHEDRAL : 13.994 3265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 15.1614 -20.6284 27.6962 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: 0.0481 REMARK 3 T33: 0.0507 T12: 0.0041 REMARK 3 T13: 0.0048 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.0566 L22: 0.1297 REMARK 3 L33: 0.1485 L12: 0.0465 REMARK 3 L13: 0.0528 L23: 0.1193 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0117 S13: -0.0141 REMARK 3 S21: -0.0351 S22: -0.0065 S23: -0.0413 REMARK 3 S31: -0.0230 S32: -0.0081 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XH9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1XCG REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BISTRIS PROPANE PH7.5, 20% REMARK 280 PEG3350, 0.2M TRIPOTASSIUM PHOSPHATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.70000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 147 REMARK 465 GLY A 148 REMARK 465 LYS A 149 REMARK 465 ARG A 150 REMARK 465 ARG A 151 REMARK 465 SER A 152 REMARK 465 SER A 153 REMARK 465 ALA A 154 REMARK 465 LEU A 155 REMARK 465 TRP A 156 REMARK 465 SER A 157 REMARK 465 GLU A 158 REMARK 465 GLY A 449 REMARK 465 GLY A 450 REMARK 465 SER A 451 REMARK 465 PHE A 452 REMARK 465 ARG A 453 REMARK 465 GLY A 454 REMARK 465 ALA A 455 REMARK 465 PHE A 456 REMARK 465 SER A 457 REMARK 465 ASN A 458 REMARK 465 SER A 459 REMARK 465 GLU A 460 REMARK 465 LYS A 461 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 27 REMARK 465 ASP B 28 REMARK 465 GLN B 29 REMARK 465 PHE B 30 REMARK 465 MET D 147 REMARK 465 GLY D 148 REMARK 465 LYS D 149 REMARK 465 ARG D 150 REMARK 465 ARG D 151 REMARK 465 SER D 152 REMARK 465 SER D 153 REMARK 465 ALA D 154 REMARK 465 LEU D 155 REMARK 465 TRP D 156 REMARK 465 GLY D 449 REMARK 465 GLY D 450 REMARK 465 SER D 451 REMARK 465 PHE D 452 REMARK 465 ARG D 453 REMARK 465 GLY D 454 REMARK 465 ALA D 455 REMARK 465 PHE D 456 REMARK 465 SER D 457 REMARK 465 ASN D 458 REMARK 465 SER D 459 REMARK 465 GLU D 460 REMARK 465 LYS D 461 REMARK 465 GLY E 1 REMARK 465 ALA E 2 REMARK 465 LYS E 27 REMARK 465 ASP E 28 REMARK 465 GLN E 29 REMARK 465 PHE E 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 418 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 420 CG CD OE1 OE2 REMARK 470 ARG A 421 CG CD NE CZ NH1 NH2 REMARK 470 MET D 164 CG SD CE REMARK 470 LYS D 165 CG CD CE NZ REMARK 470 ARG D 418 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 419 CG OD1 ND2 REMARK 470 GLU D 420 CG CD OE1 OE2 REMARK 470 ARG D 421 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 392 O HOH A 601 1.97 REMARK 500 NZ LYS A 241 OE2 GLU A 247 2.02 REMARK 500 O HOH A 862 O HOH A 888 2.16 REMARK 500 NH1 ARG A 300 O HOH A 694 2.18 REMARK 500 NH2 ARG E 122 OE1 GLU E 158 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 166 99.90 -60.91 REMARK 500 ASN A 419 39.55 76.59 REMARK 500 ARG A 428 -153.02 56.91 REMARK 500 HIS A 471 105.17 -55.51 REMARK 500 LYS B 98 -53.19 -121.48 REMARK 500 GLU D 166 97.14 -57.48 REMARK 500 ASN D 261 -36.42 -36.39 REMARK 500 ASN D 269 55.91 -109.83 REMARK 500 GLU D 420 -56.02 72.09 REMARK 500 ARG D 428 -151.06 56.89 REMARK 500 ASP D 472 37.27 -89.25 REMARK 500 LYS E 98 -57.08 -123.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP D 472 PRO D 473 141.55 REMARK 500 VAL E 33 TYR E 34 143.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 872 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 916 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH E 304 DISTANCE = 6.67 ANGSTROMS DBREF 4XH9 A 149 501 UNP Q7Z628 ARHG8_HUMAN 149 501 DBREF 4XH9 B 2 180 UNP P61586 RHOA_HUMAN 2 180 DBREF 4XH9 D 149 501 UNP Q7Z628 ARHG8_HUMAN 149 501 DBREF 4XH9 E 2 180 UNP P61586 RHOA_HUMAN 2 180 SEQADV 4XH9 MET A 147 UNP Q7Z628 INITIATING METHIONINE SEQADV 4XH9 GLY A 148 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS A 502 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS A 503 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS A 504 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS A 505 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS A 506 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS A 507 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 GLY B 1 UNP P61586 EXPRESSION TAG SEQADV 4XH9 ASN B 25 UNP P61586 PHE 25 ENGINEERED MUTATION SEQADV 4XH9 MET D 147 UNP Q7Z628 INITIATING METHIONINE SEQADV 4XH9 GLY D 148 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS D 502 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS D 503 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS D 504 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS D 505 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS D 506 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 HIS D 507 UNP Q7Z628 EXPRESSION TAG SEQADV 4XH9 GLY E 1 UNP P61586 EXPRESSION TAG SEQADV 4XH9 ASN E 25 UNP P61586 PHE 25 ENGINEERED MUTATION SEQRES 1 A 361 MET GLY LYS ARG ARG SER SER ALA LEU TRP SER GLU MET SEQRES 2 A 361 LEU ASP ILE THR MET LYS GLU SER LEU THR THR ARG GLU SEQRES 3 A 361 ILE ARG ARG GLN GLU ALA ILE TYR GLU MET SER ARG GLY SEQRES 4 A 361 GLU GLN ASP LEU ILE GLU ASP LEU LYS LEU ALA ARG LYS SEQRES 5 A 361 ALA TYR HIS ASP PRO MET LEU LYS LEU SER ILE MET SER SEQRES 6 A 361 GLU GLU GLU LEU THR HIS ILE PHE GLY ASP LEU ASP SER SEQRES 7 A 361 TYR ILE PRO LEU HIS GLU ASP LEU LEU THR ARG ILE GLY SEQRES 8 A 361 GLU ALA THR LYS PRO ASP GLY THR VAL GLU GLN ILE GLY SEQRES 9 A 361 HIS ILE LEU VAL SER TRP LEU PRO ARG LEU ASN ALA TYR SEQRES 10 A 361 ARG GLY TYR CYS SER ASN GLN LEU ALA ALA LYS ALA LEU SEQRES 11 A 361 LEU ASP GLN LYS LYS GLN ASP PRO ARG VAL GLN ASP PHE SEQRES 12 A 361 LEU GLN ARG CYS LEU GLU SER PRO PHE SER ARG LYS LEU SEQRES 13 A 361 ASP LEU TRP SER PHE LEU ASP ILE PRO ARG SER ARG LEU SEQRES 14 A 361 VAL LYS TYR PRO LEU LEU LEU LYS GLU ILE LEU LYS HIS SEQRES 15 A 361 THR PRO LYS GLU HIS PRO ASP VAL GLN LEU LEU GLU ASP SEQRES 16 A 361 ALA ILE LEU ILE ILE GLN GLY VAL LEU SER ASP ILE ASN SEQRES 17 A 361 LEU LYS LYS GLY GLU SER GLU CYS GLN TYR TYR ILE ASP SEQRES 18 A 361 LYS LEU GLU TYR LEU ASP GLU LYS GLN ARG ASP PRO ARG SEQRES 19 A 361 ILE GLU ALA SER LYS VAL LEU LEU CYS HIS GLY GLU LEU SEQRES 20 A 361 ARG SER LYS SER GLY HIS LYS LEU TYR ILE PHE LEU PHE SEQRES 21 A 361 GLN ASP ILE LEU VAL LEU THR ARG PRO VAL THR ARG ASN SEQRES 22 A 361 GLU ARG HIS SER TYR GLN VAL TYR ARG GLN PRO ILE PRO SEQRES 23 A 361 VAL GLN GLU LEU VAL LEU GLU ASP LEU GLN ASP GLY ASP SEQRES 24 A 361 VAL ARG MET GLY GLY SER PHE ARG GLY ALA PHE SER ASN SEQRES 25 A 361 SER GLU LYS ALA LYS ASN ILE PHE ARG ILE ARG PHE HIS SEQRES 26 A 361 ASP PRO SER PRO ALA GLN SER HIS THR LEU GLN ALA ASN SEQRES 27 A 361 ASP VAL PHE HIS LYS GLN GLN TRP PHE ASN CYS ILE ARG SEQRES 28 A 361 ALA ALA ILE ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 180 GLY ALA ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY ASP SEQRES 2 B 180 GLY ALA CYS GLY LYS THR CYS LEU LEU ILE VAL ASN SER SEQRES 3 B 180 LYS ASP GLN PHE PRO GLU VAL TYR VAL PRO THR VAL PHE SEQRES 4 B 180 GLU ASN TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS GLN SEQRES 5 B 180 VAL GLU LEU ALA LEU TRP ASP THR ALA GLY GLN GLU ASP SEQRES 6 B 180 TYR ASP ARG LEU ARG PRO LEU SER TYR PRO ASP THR ASP SEQRES 7 B 180 VAL ILE LEU MET CYS PHE SER ILE ASP SER PRO ASP SER SEQRES 8 B 180 LEU GLU ASN ILE PRO GLU LYS TRP THR PRO GLU VAL LYS SEQRES 9 B 180 HIS PHE CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY ASN SEQRES 10 B 180 LYS LYS ASP LEU ARG ASN ASP GLU HIS THR ARG ARG GLU SEQRES 11 B 180 LEU ALA LYS MET LYS GLN GLU PRO VAL LYS PRO GLU GLU SEQRES 12 B 180 GLY ARG ASP MET ALA ASN ARG ILE GLY ALA PHE GLY TYR SEQRES 13 B 180 MET GLU CYS SER ALA LYS THR LYS ASP GLY VAL ARG GLU SEQRES 14 B 180 VAL PHE GLU MET ALA THR ARG ALA ALA LEU GLN SEQRES 1 D 361 MET GLY LYS ARG ARG SER SER ALA LEU TRP SER GLU MET SEQRES 2 D 361 LEU ASP ILE THR MET LYS GLU SER LEU THR THR ARG GLU SEQRES 3 D 361 ILE ARG ARG GLN GLU ALA ILE TYR GLU MET SER ARG GLY SEQRES 4 D 361 GLU GLN ASP LEU ILE GLU ASP LEU LYS LEU ALA ARG LYS SEQRES 5 D 361 ALA TYR HIS ASP PRO MET LEU LYS LEU SER ILE MET SER SEQRES 6 D 361 GLU GLU GLU LEU THR HIS ILE PHE GLY ASP LEU ASP SER SEQRES 7 D 361 TYR ILE PRO LEU HIS GLU ASP LEU LEU THR ARG ILE GLY SEQRES 8 D 361 GLU ALA THR LYS PRO ASP GLY THR VAL GLU GLN ILE GLY SEQRES 9 D 361 HIS ILE LEU VAL SER TRP LEU PRO ARG LEU ASN ALA TYR SEQRES 10 D 361 ARG GLY TYR CYS SER ASN GLN LEU ALA ALA LYS ALA LEU SEQRES 11 D 361 LEU ASP GLN LYS LYS GLN ASP PRO ARG VAL GLN ASP PHE SEQRES 12 D 361 LEU GLN ARG CYS LEU GLU SER PRO PHE SER ARG LYS LEU SEQRES 13 D 361 ASP LEU TRP SER PHE LEU ASP ILE PRO ARG SER ARG LEU SEQRES 14 D 361 VAL LYS TYR PRO LEU LEU LEU LYS GLU ILE LEU LYS HIS SEQRES 15 D 361 THR PRO LYS GLU HIS PRO ASP VAL GLN LEU LEU GLU ASP SEQRES 16 D 361 ALA ILE LEU ILE ILE GLN GLY VAL LEU SER ASP ILE ASN SEQRES 17 D 361 LEU LYS LYS GLY GLU SER GLU CYS GLN TYR TYR ILE ASP SEQRES 18 D 361 LYS LEU GLU TYR LEU ASP GLU LYS GLN ARG ASP PRO ARG SEQRES 19 D 361 ILE GLU ALA SER LYS VAL LEU LEU CYS HIS GLY GLU LEU SEQRES 20 D 361 ARG SER LYS SER GLY HIS LYS LEU TYR ILE PHE LEU PHE SEQRES 21 D 361 GLN ASP ILE LEU VAL LEU THR ARG PRO VAL THR ARG ASN SEQRES 22 D 361 GLU ARG HIS SER TYR GLN VAL TYR ARG GLN PRO ILE PRO SEQRES 23 D 361 VAL GLN GLU LEU VAL LEU GLU ASP LEU GLN ASP GLY ASP SEQRES 24 D 361 VAL ARG MET GLY GLY SER PHE ARG GLY ALA PHE SER ASN SEQRES 25 D 361 SER GLU LYS ALA LYS ASN ILE PHE ARG ILE ARG PHE HIS SEQRES 26 D 361 ASP PRO SER PRO ALA GLN SER HIS THR LEU GLN ALA ASN SEQRES 27 D 361 ASP VAL PHE HIS LYS GLN GLN TRP PHE ASN CYS ILE ARG SEQRES 28 D 361 ALA ALA ILE ALA HIS HIS HIS HIS HIS HIS SEQRES 1 E 180 GLY ALA ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY ASP SEQRES 2 E 180 GLY ALA CYS GLY LYS THR CYS LEU LEU ILE VAL ASN SER SEQRES 3 E 180 LYS ASP GLN PHE PRO GLU VAL TYR VAL PRO THR VAL PHE SEQRES 4 E 180 GLU ASN TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS GLN SEQRES 5 E 180 VAL GLU LEU ALA LEU TRP ASP THR ALA GLY GLN GLU ASP SEQRES 6 E 180 TYR ASP ARG LEU ARG PRO LEU SER TYR PRO ASP THR ASP SEQRES 7 E 180 VAL ILE LEU MET CYS PHE SER ILE ASP SER PRO ASP SER SEQRES 8 E 180 LEU GLU ASN ILE PRO GLU LYS TRP THR PRO GLU VAL LYS SEQRES 9 E 180 HIS PHE CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY ASN SEQRES 10 E 180 LYS LYS ASP LEU ARG ASN ASP GLU HIS THR ARG ARG GLU SEQRES 11 E 180 LEU ALA LYS MET LYS GLN GLU PRO VAL LYS PRO GLU GLU SEQRES 12 E 180 GLY ARG ASP MET ALA ASN ARG ILE GLY ALA PHE GLY TYR SEQRES 13 E 180 MET GLU CYS SER ALA LYS THR LYS ASP GLY VAL ARG GLU SEQRES 14 E 180 VAL PHE GLU MET ALA THR ARG ALA ALA LEU GLN FORMUL 5 HOH *921(H2 O) HELIX 1 AA1 THR A 169 TYR A 200 1 32 HELIX 2 AA2 TYR A 200 LEU A 207 1 8 HELIX 3 AA3 SER A 211 GLY A 220 1 10 HELIX 4 AA4 TYR A 225 ALA A 239 1 15 HELIX 5 AA5 ILE A 249 LEU A 257 1 9 HELIX 6 AA6 PRO A 258 ALA A 262 5 5 HELIX 7 AA7 TYR A 263 LYS A 280 1 18 HELIX 8 AA8 ASP A 283 SER A 296 1 14 HELIX 9 AA9 PRO A 297 ARG A 300 5 4 HELIX 10 AB1 ASP A 303 ASP A 309 1 7 HELIX 11 AB2 ASP A 309 VAL A 316 1 8 HELIX 12 AB3 LYS A 317 HIS A 328 1 12 HELIX 13 AB4 PRO A 334 ASP A 367 1 34 HELIX 14 AB5 ASP A 373 ARG A 377 5 5 HELIX 15 AB6 ASP A 378 ALA A 383 1 6 HELIX 16 AB7 ASP A 485 HIS A 507 1 23 HELIX 17 AB8 GLY B 14 CYS B 16 5 3 HELIX 18 AB9 GLY B 17 VAL B 24 1 8 HELIX 19 AC1 LEU B 69 TYR B 74 5 6 HELIX 20 AC2 SER B 88 LYS B 98 1 11 HELIX 21 AC3 LYS B 98 CYS B 107 1 10 HELIX 22 AC4 LYS B 118 ARG B 122 5 5 HELIX 23 AC5 ASP B 124 MET B 134 1 11 HELIX 24 AC6 LYS B 140 ILE B 151 1 12 HELIX 25 AC7 GLY B 166 LEU B 179 1 14 HELIX 26 AC8 GLU D 158 ILE D 162 5 5 HELIX 27 AC9 THR D 169 TYR D 200 1 32 HELIX 28 AD1 TYR D 200 LEU D 207 1 8 HELIX 29 AD2 SER D 211 GLY D 220 1 10 HELIX 30 AD3 TYR D 225 ALA D 239 1 15 HELIX 31 AD4 ILE D 249 LEU D 257 1 9 HELIX 32 AD5 PRO D 258 ALA D 262 5 5 HELIX 33 AD6 TYR D 263 ASN D 269 1 7 HELIX 34 AD7 GLN D 270 LYS D 280 1 11 HELIX 35 AD8 ASP D 283 SER D 296 1 14 HELIX 36 AD9 PRO D 297 ARG D 300 5 4 HELIX 37 AE1 ASP D 303 ASP D 309 1 7 HELIX 38 AE2 ASP D 309 VAL D 316 1 8 HELIX 39 AE3 LYS D 317 HIS D 328 1 12 HELIX 40 AE4 PRO D 334 ASP D 367 1 34 HELIX 41 AE5 ASP D 373 ARG D 377 5 5 HELIX 42 AE6 ASP D 378 ALA D 383 1 6 HELIX 43 AE7 ASP D 485 HIS D 507 1 23 HELIX 44 AE8 GLY E 17 VAL E 24 1 8 HELIX 45 AE9 LEU E 69 TYR E 74 5 6 HELIX 46 AF1 SER E 88 LYS E 98 1 11 HELIX 47 AF2 LYS E 98 CYS E 107 1 10 HELIX 48 AF3 LYS E 118 ARG E 122 5 5 HELIX 49 AF4 ASP E 124 MET E 134 1 11 HELIX 50 AF5 LYS E 140 ILE E 151 1 12 HELIX 51 AF6 GLY E 166 GLN E 180 1 15 SHEET 1 AA1 4 LEU A 369 GLU A 370 0 SHEET 2 AA1 4 SER A 423 VAL A 426 1 O VAL A 426 N GLU A 370 SHEET 3 AA1 4 ILE A 409 VAL A 416 -1 N ARG A 414 O GLN A 425 SHEET 4 AA1 4 ILE A 431 PRO A 432 -1 O ILE A 431 N LEU A 410 SHEET 1 AA2 8 LEU A 369 GLU A 370 0 SHEET 2 AA2 8 SER A 423 VAL A 426 1 O VAL A 426 N GLU A 370 SHEET 3 AA2 8 ILE A 409 VAL A 416 -1 N ARG A 414 O GLN A 425 SHEET 4 AA2 8 LYS A 400 PHE A 406 -1 N PHE A 404 O VAL A 411 SHEET 5 AA2 8 LEU A 387 SER A 395 -1 N CYS A 389 O LEU A 405 SHEET 6 AA2 8 SER A 478 GLN A 482 -1 O GLN A 482 N ARG A 394 SHEET 7 AA2 8 ILE A 465 PHE A 470 -1 N PHE A 466 O LEU A 481 SHEET 8 AA2 8 LEU A 436 ASP A 440 -1 N GLU A 439 O ARG A 467 SHEET 1 AA3 6 TYR B 42 VAL B 48 0 SHEET 2 AA3 6 LYS B 51 TRP B 58 -1 O LEU B 57 N TYR B 42 SHEET 3 AA3 6 ILE B 4 GLY B 12 1 N ILE B 4 O GLU B 54 SHEET 4 AA3 6 VAL B 79 SER B 85 1 O CYS B 83 N VAL B 11 SHEET 5 AA3 6 ILE B 112 ASN B 117 1 O ASN B 117 N PHE B 84 SHEET 6 AA3 6 GLY B 155 GLU B 158 1 O GLY B 155 N LEU B 114 SHEET 1 AA4 4 LEU D 369 GLU D 370 0 SHEET 2 AA4 4 HIS D 422 VAL D 426 1 O VAL D 426 N GLU D 370 SHEET 3 AA4 4 ILE D 409 THR D 417 -1 N ARG D 414 O GLN D 425 SHEET 4 AA4 4 ILE D 431 PRO D 432 -1 O ILE D 431 N LEU D 410 SHEET 1 AA5 8 LEU D 369 GLU D 370 0 SHEET 2 AA5 8 HIS D 422 VAL D 426 1 O VAL D 426 N GLU D 370 SHEET 3 AA5 8 ILE D 409 THR D 417 -1 N ARG D 414 O GLN D 425 SHEET 4 AA5 8 LYS D 400 PHE D 406 -1 N PHE D 404 O VAL D 411 SHEET 5 AA5 8 LEU D 387 SER D 395 -1 N CYS D 389 O LEU D 405 SHEET 6 AA5 8 SER D 478 GLN D 482 -1 O GLN D 482 N ARG D 394 SHEET 7 AA5 8 ILE D 465 PHE D 470 -1 N ILE D 468 O HIS D 479 SHEET 8 AA5 8 LEU D 436 ASP D 440 -1 N GLU D 439 O ARG D 467 SHEET 1 AA6 6 TYR E 42 VAL E 48 0 SHEET 2 AA6 6 LYS E 51 TRP E 58 -1 O LEU E 55 N ALA E 44 SHEET 3 AA6 6 ILE E 4 GLY E 12 1 N LEU E 8 O ALA E 56 SHEET 4 AA6 6 VAL E 79 SER E 85 1 O CYS E 83 N VAL E 11 SHEET 5 AA6 6 ILE E 112 ASN E 117 1 O VAL E 115 N MET E 82 SHEET 6 AA6 6 GLY E 155 GLU E 158 1 O GLY E 155 N LEU E 114 CRYST1 54.100 101.400 116.200 90.00 94.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018484 0.000000 0.001390 0.00000 SCALE2 0.000000 0.009862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008630 0.00000