PDB Short entry for 4XL8 HEADER VIRAL PROTEIN 13-JAN-15 4XL8 TITLE CRYSTAL STRUCTURE OF HUMAN ADENOVIRUS 52 SHORT FIBER KNOB IN COMPLEX TITLE 2 WITH 2-O-METHYL-5-N-ACETYLNEURAMINIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER-1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 183-363; COMPND 5 SYNONYM: ADENOVIRUS 52 SHORT FIBER KNOB; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: HIS-TAGGED KNOB DOMAIN OF SHORT FIBER (FIBER-1) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 52; SOURCE 3 ORGANISM_TAXID: 332179; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE-30XA KEYWDS VIRAL PROTEIN, SIALIC ACID, VIRAL ATTACHMENT, FIBER KNOB, PROTEIN KEYWDS 2 CARBOHYDRATE INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR T.STEHLE,A.M.LIACI REVDAT 8 10-JAN-24 4XL8 1 HETSYN REVDAT 7 29-JUL-20 4XL8 1 COMPND REMARK HETNAM SITE REVDAT 6 16-OCT-19 4XL8 1 REMARK REVDAT 5 06-SEP-17 4XL8 1 REMARK SITE ATOM REVDAT 4 22-JUL-15 4XL8 1 JRNL REVDAT 3 04-MAR-15 4XL8 1 JRNL REVDAT 2 11-FEB-15 4XL8 1 REMARK REVDAT 1 21-JAN-15 4XL8 0 JRNL AUTH A.LENMAN,A.M.LIACI,Y.LIU,C.ARDAHL,A.RAJAN,E.NILSSON, JRNL AUTH 2 W.BRADFORD,L.KAESHAMMER,M.S.JONES,L.FRANGSMYR,T.FEIZI, JRNL AUTH 3 T.STEHLE,N.ARNBERG JRNL TITL HUMAN ADENOVIRUS 52 USES SIALIC ACID-CONTAINING JRNL TITL 2 GLYCOPROTEINS AND THE COXSACKIE AND ADENOVIRUS RECEPTOR FOR JRNL TITL 3 BINDING TO TARGET CELLS. JRNL REF PLOS PATHOG. V. 11 04657 2015 JRNL REFN ESSN 1553-7374 JRNL PMID 25674795 JRNL DOI 10.1371/JOURNAL.PPAT.1004657 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 58963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4892 - 4.5426 1.00 2877 150 0.1569 0.1576 REMARK 3 2 4.5426 - 3.6065 1.00 2749 145 0.1229 0.1488 REMARK 3 3 3.6065 - 3.1509 1.00 2705 142 0.1323 0.1529 REMARK 3 4 3.1509 - 2.8629 1.00 2722 143 0.1460 0.1849 REMARK 3 5 2.8629 - 2.6578 1.00 2668 141 0.1436 0.1531 REMARK 3 6 2.6578 - 2.5011 1.00 2682 141 0.1469 0.1567 REMARK 3 7 2.5011 - 2.3759 1.00 2684 141 0.1386 0.1644 REMARK 3 8 2.3759 - 2.2725 1.00 2675 141 0.1404 0.1875 REMARK 3 9 2.2725 - 2.1850 1.00 2670 141 0.1421 0.1649 REMARK 3 10 2.1850 - 2.1096 1.00 2639 138 0.1398 0.1839 REMARK 3 11 2.1096 - 2.0437 1.00 2632 139 0.1417 0.1768 REMARK 3 12 2.0437 - 1.9853 1.00 2679 141 0.1430 0.1594 REMARK 3 13 1.9853 - 1.9330 1.00 2645 138 0.1538 0.1780 REMARK 3 14 1.9330 - 1.8858 1.00 2653 140 0.1647 0.1694 REMARK 3 15 1.8858 - 1.8430 1.00 2654 140 0.1713 0.2210 REMARK 3 16 1.8430 - 1.8037 1.00 2652 139 0.1860 0.2201 REMARK 3 17 1.8037 - 1.7677 1.00 2646 139 0.1940 0.2333 REMARK 3 18 1.7677 - 1.7343 1.00 2605 137 0.2038 0.2306 REMARK 3 19 1.7343 - 1.7033 1.00 2662 141 0.2192 0.2473 REMARK 3 20 1.7033 - 1.6745 1.00 2610 137 0.2299 0.2489 REMARK 3 21 1.6745 - 1.6474 0.94 2508 132 0.2680 0.2601 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4177 REMARK 3 ANGLE : 1.390 5769 REMARK 3 CHIRALITY : 0.101 687 REMARK 3 PLANARITY : 0.007 741 REMARK 3 DIHEDRAL : 12.744 1569 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58970 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.30300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NOB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG1000, 12.5% (W/V) REMARK 280 PEG3350, 12.5% (W/V) MPD, 0.02 MM OF EACH NA L GLUTAMATE, DL REMARK 280 ALANINE, GLYCINE, DL LYSINE HCL, AND DL SERINE, 0.1 M TRIS/ REMARK 280 BICINE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.88500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.32500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.32500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.88500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 155 REMARK 465 ARG A 156 REMARK 465 GLY A 157 REMARK 465 SER A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 GLY A 165 REMARK 465 SER A 166 REMARK 465 GLY A 167 REMARK 465 SER A 168 REMARK 465 GLY A 169 REMARK 465 SER A 170 REMARK 465 GLY A 171 REMARK 465 ILE A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 ARG A 175 REMARK 465 PRO A 176 REMARK 465 TYR A 177 REMARK 465 ASN A 178 REMARK 465 GLY A 179 REMARK 465 THR A 180 REMARK 465 GLY A 181 REMARK 465 SER A 182 REMARK 465 ARG A 183 REMARK 465 PHE A 184 REMARK 465 ASN A 185 REMARK 465 SER A 186 REMARK 465 SER A 187 REMARK 465 GLY A 188 REMARK 465 ALA A 189 REMARK 465 ILE A 190 REMARK 465 ALA A 191 REMARK 465 PHE A 192 REMARK 465 MET B 155 REMARK 465 ARG B 156 REMARK 465 GLY B 157 REMARK 465 SER B 158 REMARK 465 HIS B 159 REMARK 465 HIS B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 GLY B 165 REMARK 465 SER B 166 REMARK 465 GLY B 167 REMARK 465 SER B 168 REMARK 465 GLY B 169 REMARK 465 SER B 170 REMARK 465 GLY B 171 REMARK 465 ILE B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 ARG B 175 REMARK 465 PRO B 176 REMARK 465 TYR B 177 REMARK 465 ASN B 178 REMARK 465 GLY B 179 REMARK 465 THR B 180 REMARK 465 GLY B 181 REMARK 465 SER B 182 REMARK 465 ARG B 183 REMARK 465 PHE B 184 REMARK 465 ASN B 185 REMARK 465 SER B 186 REMARK 465 SER B 187 REMARK 465 GLY B 188 REMARK 465 ALA B 189 REMARK 465 ILE B 190 REMARK 465 ALA B 191 REMARK 465 PHE B 192 REMARK 465 GLY B 193 REMARK 465 GLY B 276 REMARK 465 ASP B 277 REMARK 465 SER B 278 REMARK 465 PRO B 279 REMARK 465 ALA B 280 REMARK 465 SER B 281 REMARK 465 ASN B 282 REMARK 465 PRO B 283 REMARK 465 THR B 284 REMARK 465 MET C 155 REMARK 465 ARG C 156 REMARK 465 GLY C 157 REMARK 465 SER C 158 REMARK 465 HIS C 159 REMARK 465 HIS C 160 REMARK 465 HIS C 161 REMARK 465 HIS C 162 REMARK 465 HIS C 163 REMARK 465 HIS C 164 REMARK 465 GLY C 165 REMARK 465 SER C 166 REMARK 465 GLY C 167 REMARK 465 SER C 168 REMARK 465 GLY C 169 REMARK 465 ASN C 178 REMARK 465 GLY C 179 REMARK 465 THR C 180 REMARK 465 GLY C 181 REMARK 465 SER C 182 REMARK 465 ARG C 183 REMARK 465 PHE C 184 REMARK 465 ASN C 185 REMARK 465 SER C 186 REMARK 465 SER C 187 REMARK 465 GLY C 188 REMARK 465 ALA C 189 REMARK 465 ILE C 190 REMARK 465 ALA C 191 REMARK 465 PHE C 192 REMARK 465 ILE C 273 REMARK 465 ARG C 274 REMARK 465 GLN C 275 REMARK 465 GLY C 276 REMARK 465 ASP C 277 REMARK 465 SER C 278 REMARK 465 PRO C 279 REMARK 465 ALA C 280 REMARK 465 SER C 281 REMARK 465 ASN C 282 REMARK 465 PRO C 283 REMARK 465 THR C 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 347 CD NE CZ NH1 NH2 REMARK 470 GLN B 275 CG CD OE1 NE2 REMARK 470 LYS B 341 CE NZ REMARK 470 ARG B 347 NE CZ NH1 NH2 REMARK 470 LYS C 260 CG CD CE NZ REMARK 470 ARG C 347 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN C 312 O HOH C 501 2.06 REMARK 500 OE2 GLU B 246 O4 TAM B 401 2.10 REMARK 500 OG SER B 302 O HOH B 501 2.13 REMARK 500 O ALA C 344 O HOH C 502 2.14 REMARK 500 O HOH A 624 O HOH A 628 2.14 REMARK 500 O2 GOL A 402 O HOH A 501 2.17 REMARK 500 ND2 ASN B 204 O HOH B 502 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN B 204 O HOH A 530 2555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 243 75.15 -163.57 REMARK 500 ASN B 243 77.48 -161.87 REMARK 500 ASN C 243 74.35 -162.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 4XL8 A 183 363 UNP A0MK70 A0MK70_9ADEN 183 363 DBREF 4XL8 B 183 363 UNP A0MK70 A0MK70_9ADEN 183 363 DBREF 4XL8 C 183 363 UNP A0MK70 A0MK70_9ADEN 183 363 SEQADV 4XL8 MET A 155 UNP A0MK70 INITIATING METHIONINE SEQADV 4XL8 ARG A 156 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY A 157 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER A 158 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS A 159 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS A 160 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS A 161 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS A 162 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS A 163 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS A 164 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY A 165 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER A 166 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY A 167 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER A 168 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY A 169 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER A 170 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY A 171 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 ILE A 172 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLU A 173 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY A 174 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 ARG A 175 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 PRO A 176 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 TYR A 177 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 ASN A 178 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY A 179 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 THR A 180 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY A 181 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER A 182 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 MET B 155 UNP A0MK70 INITIATING METHIONINE SEQADV 4XL8 ARG B 156 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY B 157 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER B 158 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS B 159 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS B 160 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS B 161 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS B 162 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS B 163 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS B 164 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY B 165 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER B 166 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY B 167 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER B 168 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY B 169 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER B 170 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY B 171 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 ILE B 172 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLU B 173 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY B 174 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 ARG B 175 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 PRO B 176 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 TYR B 177 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 ASN B 178 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY B 179 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 THR B 180 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY B 181 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER B 182 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 MET C 155 UNP A0MK70 INITIATING METHIONINE SEQADV 4XL8 ARG C 156 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY C 157 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER C 158 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS C 159 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS C 160 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS C 161 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS C 162 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS C 163 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 HIS C 164 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY C 165 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER C 166 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY C 167 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER C 168 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY C 169 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER C 170 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY C 171 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 ILE C 172 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLU C 173 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY C 174 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 ARG C 175 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 PRO C 176 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 TYR C 177 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 ASN C 178 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY C 179 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 THR C 180 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 GLY C 181 UNP A0MK70 EXPRESSION TAG SEQADV 4XL8 SER C 182 UNP A0MK70 EXPRESSION TAG SEQRES 1 A 209 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLY SEQRES 2 A 209 SER GLY SER GLY ILE GLU GLY ARG PRO TYR ASN GLY THR SEQRES 3 A 209 GLY SER ARG PHE ASN SER SER GLY ALA ILE ALA PHE GLY SEQRES 4 A 209 ILE GLN THR LEU TRP THR PRO PRO THR SER ASN PRO ASN SEQRES 5 A 209 CYS THR VAL TYR THR GLU SER ASP SER LEU LEU SER LEU SEQRES 6 A 209 CYS LEU THR LYS CYS GLY ALA HIS VAL LEU GLY SER VAL SEQRES 7 A 209 SER LEU THR GLY VAL ALA GLY THR MET THR ASN MET ALA SEQRES 8 A 209 GLU THR SER LEU ALA ILE GLU PHE THR PHE ASP ASP THR SEQRES 9 A 209 GLY LYS LEU LEU HIS SER PRO LEU VAL ASN ASN THR PHE SEQRES 10 A 209 SER ILE ARG GLN GLY ASP SER PRO ALA SER ASN PRO THR SEQRES 11 A 209 TYR ASN ALA LEU ALA PHE MET PRO ASN SER THR LEU TYR SEQRES 12 A 209 ALA ARG GLY GLY SER GLY GLU PRO ARG ASN ASN TYR TYR SEQRES 13 A 209 VAL GLN THR TYR LEU ARG GLY ASN VAL GLN ARG PRO ILE SEQRES 14 A 209 THR LEU THR VAL THR PHE ASN SER ALA ALA THR GLY TYR SEQRES 15 A 209 SER LEU SER PHE LYS TRP THR ALA VAL VAL ARG GLU LYS SEQRES 16 A 209 PHE ALA ALA PRO ALA THR SER PHE CYS TYR ILE THR GLU SEQRES 17 A 209 GLN SEQRES 1 B 209 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLY SEQRES 2 B 209 SER GLY SER GLY ILE GLU GLY ARG PRO TYR ASN GLY THR SEQRES 3 B 209 GLY SER ARG PHE ASN SER SER GLY ALA ILE ALA PHE GLY SEQRES 4 B 209 ILE GLN THR LEU TRP THR PRO PRO THR SER ASN PRO ASN SEQRES 5 B 209 CYS THR VAL TYR THR GLU SER ASP SER LEU LEU SER LEU SEQRES 6 B 209 CYS LEU THR LYS CYS GLY ALA HIS VAL LEU GLY SER VAL SEQRES 7 B 209 SER LEU THR GLY VAL ALA GLY THR MET THR ASN MET ALA SEQRES 8 B 209 GLU THR SER LEU ALA ILE GLU PHE THR PHE ASP ASP THR SEQRES 9 B 209 GLY LYS LEU LEU HIS SER PRO LEU VAL ASN ASN THR PHE SEQRES 10 B 209 SER ILE ARG GLN GLY ASP SER PRO ALA SER ASN PRO THR SEQRES 11 B 209 TYR ASN ALA LEU ALA PHE MET PRO ASN SER THR LEU TYR SEQRES 12 B 209 ALA ARG GLY GLY SER GLY GLU PRO ARG ASN ASN TYR TYR SEQRES 13 B 209 VAL GLN THR TYR LEU ARG GLY ASN VAL GLN ARG PRO ILE SEQRES 14 B 209 THR LEU THR VAL THR PHE ASN SER ALA ALA THR GLY TYR SEQRES 15 B 209 SER LEU SER PHE LYS TRP THR ALA VAL VAL ARG GLU LYS SEQRES 16 B 209 PHE ALA ALA PRO ALA THR SER PHE CYS TYR ILE THR GLU SEQRES 17 B 209 GLN SEQRES 1 C 209 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLY SEQRES 2 C 209 SER GLY SER GLY ILE GLU GLY ARG PRO TYR ASN GLY THR SEQRES 3 C 209 GLY SER ARG PHE ASN SER SER GLY ALA ILE ALA PHE GLY SEQRES 4 C 209 ILE GLN THR LEU TRP THR PRO PRO THR SER ASN PRO ASN SEQRES 5 C 209 CYS THR VAL TYR THR GLU SER ASP SER LEU LEU SER LEU SEQRES 6 C 209 CYS LEU THR LYS CYS GLY ALA HIS VAL LEU GLY SER VAL SEQRES 7 C 209 SER LEU THR GLY VAL ALA GLY THR MET THR ASN MET ALA SEQRES 8 C 209 GLU THR SER LEU ALA ILE GLU PHE THR PHE ASP ASP THR SEQRES 9 C 209 GLY LYS LEU LEU HIS SER PRO LEU VAL ASN ASN THR PHE SEQRES 10 C 209 SER ILE ARG GLN GLY ASP SER PRO ALA SER ASN PRO THR SEQRES 11 C 209 TYR ASN ALA LEU ALA PHE MET PRO ASN SER THR LEU TYR SEQRES 12 C 209 ALA ARG GLY GLY SER GLY GLU PRO ARG ASN ASN TYR TYR SEQRES 13 C 209 VAL GLN THR TYR LEU ARG GLY ASN VAL GLN ARG PRO ILE SEQRES 14 C 209 THR LEU THR VAL THR PHE ASN SER ALA ALA THR GLY TYR SEQRES 15 C 209 SER LEU SER PHE LYS TRP THR ALA VAL VAL ARG GLU LYS SEQRES 16 C 209 PHE ALA ALA PRO ALA THR SER PHE CYS TYR ILE THR GLU SEQRES 17 C 209 GLN HET MNA A 401 22 HET GOL A 402 6 HET TAM B 401 11 HET GLU B 402 10 HET ALA B 403 6 HET MNA C 401 22 HET MPD C 402 8 HET MRD C 403 8 HETNAM MNA 2-O-METHYL-5-N-ACETYL-ALPHA-D-NEURAMINIC ACID HETNAM GOL GLYCEROL HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE HETNAM GLU GLUTAMIC ACID HETNAM ALA ALANINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETSYN MNA 2-O-METHYL-5-N-ACETYL-ALPHA-D- NEURAMINIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 MNA 2(C12 H21 N O9) FORMUL 5 GOL C3 H8 O3 FORMUL 6 TAM C7 H17 N O3 FORMUL 7 GLU C5 H9 N O4 FORMUL 8 ALA C3 H7 N O2 FORMUL 10 MPD C6 H14 O2 FORMUL 11 MRD C6 H14 O2 FORMUL 12 HOH *351(H2 O) HELIX 1 AA1 ALA A 238 ASN A 243 5 6 HELIX 2 AA2 LEU A 266 THR A 270 5 5 HELIX 3 AA3 ASN A 286 MET A 291 5 6 HELIX 4 AA4 GLU A 304 ARG A 306 5 3 HELIX 5 AA5 ARG A 316 ASN A 318 5 3 HELIX 6 AA6 ALA B 238 ASN B 243 5 6 HELIX 7 AA7 ASN B 286 MET B 291 5 6 HELIX 8 AA8 GLU B 304 ARG B 306 5 3 HELIX 9 AA9 ARG B 316 ASN B 318 5 3 HELIX 10 AB1 ALA C 238 ASN C 243 5 6 HELIX 11 AB2 ASN C 286 MET C 291 5 6 HELIX 12 AB3 GLU C 304 ARG C 306 5 3 HELIX 13 AB4 ARG C 316 ASN C 318 5 3 SHEET 1 AA1 5 SER A 272 ILE A 273 0 SHEET 2 AA1 5 THR A 196 TRP A 198 -1 N TRP A 198 O SER A 272 SHEET 3 AA1 5 SER A 215 CYS A 224 -1 O LEU A 221 N LEU A 197 SHEET 4 AA1 5 HIS A 227 GLY A 236 -1 O HIS A 227 N CYS A 224 SHEET 5 AA1 5 ALA A 351 ILE A 360 -1 O ALA A 352 N LEU A 234 SHEET 1 AA2 5 LEU A 261 HIS A 263 0 SHEET 2 AA2 5 SER A 248 PHE A 255 -1 N THR A 254 O LEU A 262 SHEET 3 AA2 5 TYR A 336 THR A 343 -1 O LEU A 338 N PHE A 253 SHEET 4 AA2 5 PRO A 322 PHE A 329 -1 N THR A 326 O LYS A 341 SHEET 5 AA2 5 ASN A 308 TYR A 314 -1 N TYR A 309 O VAL A 327 SHEET 1 AA3 5 SER B 272 ILE B 273 0 SHEET 2 AA3 5 THR B 196 TRP B 198 -1 N TRP B 198 O SER B 272 SHEET 3 AA3 5 SER B 215 CYS B 224 -1 O LEU B 221 N LEU B 197 SHEET 4 AA3 5 HIS B 227 GLY B 236 -1 O HIS B 227 N CYS B 224 SHEET 5 AA3 5 ALA B 351 ILE B 360 -1 O ALA B 352 N LEU B 234 SHEET 1 AA4 5 LEU B 261 HIS B 263 0 SHEET 2 AA4 5 SER B 248 PHE B 255 -1 N THR B 254 O LEU B 262 SHEET 3 AA4 5 TYR B 336 THR B 343 -1 O LEU B 338 N PHE B 253 SHEET 4 AA4 5 PRO B 322 PHE B 329 -1 N THR B 326 O LYS B 341 SHEET 5 AA4 5 ASN B 308 TYR B 314 -1 N TYR B 309 O VAL B 327 SHEET 1 AA5 6 PHE C 271 SER C 272 0 SHEET 2 AA5 6 ILE C 172 ARG C 175 1 N GLY C 174 O SER C 272 SHEET 3 AA5 6 THR C 196 TRP C 198 -1 O TRP C 198 N GLU C 173 SHEET 4 AA5 6 SER C 215 CYS C 224 -1 O LEU C 221 N LEU C 197 SHEET 5 AA5 6 HIS C 227 GLY C 236 -1 O HIS C 227 N CYS C 224 SHEET 6 AA5 6 ALA C 351 ILE C 360 -1 O ALA C 352 N LEU C 234 SHEET 1 AA6 5 LEU C 261 HIS C 263 0 SHEET 2 AA6 5 SER C 248 PHE C 255 -1 N THR C 254 O LEU C 262 SHEET 3 AA6 5 TYR C 336 THR C 343 -1 O TYR C 336 N PHE C 255 SHEET 4 AA6 5 PRO C 322 PHE C 329 -1 N THR C 326 O LYS C 341 SHEET 5 AA6 5 ASN C 308 TYR C 314 -1 N TYR C 309 O VAL C 327 CRYST1 63.770 81.610 92.650 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015681 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010793 0.00000