PDB Short entry for 4XWH HEADER HYDROLASE 28-JAN-15 4XWH TITLE CRYSTAL STRUCTURE OF THE HUMAN N-ACETYL-ALPHA-GLUCOSAMINIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-N-ACETYLGLUCOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: N-ACETYL-ALPHA-GLUCOSAMINIDASE,NAG; COMPND 5 EC: 3.2.1.50; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAGLU, UFHSD1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HT-1080; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXD671 KEYWDS GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BIRRANE,M.MEIYAPPAN,A.DASSIER REVDAT 5 27-SEP-23 4XWH 1 HETSYN REVDAT 4 29-JUL-20 4XWH 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 17-JUL-19 4XWH 1 JRNL REVDAT 2 22-NOV-17 4XWH 1 REMARK REVDAT 1 03-FEB-16 4XWH 0 JRNL AUTH G.BIRRANE,A.L.DASSIER,A.ROMASHKO,D.LUNDBERG,K.HOLMES, JRNL AUTH 2 T.COTTLE,A.W.NORTON,B.ZHANG,M.F.CONCINO,M.MEIYAPPAN JRNL TITL STRUCTURAL CHARACTERIZATION OF THE JRNL TITL 2 ALPHA-N-ACETYLGLUCOSAMINIDASE, A KEY ENZYME IN THE JRNL TITL 3 PATHOGENESIS OF SANFILIPPO SYNDROME B. JRNL REF J.STRUCT.BIOL. V. 205 65 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 30802506 JRNL DOI 10.1016/J.JSB.2019.02.005 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 77480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3993 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 262 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 175 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6113 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5635 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8355 ; 1.776 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12916 ; 1.110 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 734 ; 6.162 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;35.310 ;22.553 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 885 ;18.275 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;19.703 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 906 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6902 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1518 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2897 ; 1.460 ; 3.560 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2896 ; 1.461 ; 3.559 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3623 ; 2.239 ; 5.334 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3624 ; 2.239 ; 5.336 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3216 ; 2.375 ; 4.035 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3216 ; 2.374 ; 4.035 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4726 ; 3.779 ; 5.934 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7205 ; 5.717 ;30.136 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7110 ; 5.695 ;29.917 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 743 REMARK 3 RESIDUE RANGE : A 2004 A 2010 REMARK 3 RESIDUE RANGE : A 2001 A 2003 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0970 92.5700 39.6260 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.1045 REMARK 3 T33: 0.0836 T12: 0.0941 REMARK 3 T13: -0.0212 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.0414 L22: 0.5831 REMARK 3 L33: 0.8530 L12: -0.1975 REMARK 3 L13: 0.1507 L23: -0.0828 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: 0.0922 S13: -0.1373 REMARK 3 S21: -0.0615 S22: -0.0542 S23: -0.0476 REMARK 3 S31: 0.2209 S32: 0.2093 S33: -0.0071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206316. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81740 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.76300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VCC REMARK 200 REMARK 200 REMARK: HEXAGONAL ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M LITHIUM SULFATE, 0.01 M NICKEL REMARK 280 CHLORIDE, 0.1 M TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.19900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.19900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.19900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 130 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 VAL A 143 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 377 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 520 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 565 CG - CD - NE ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 565 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 565 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 643 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 643 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 674 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 133 139.33 108.80 REMARK 500 THR A 209 -42.16 76.37 REMARK 500 HIS A 270 17.45 59.11 REMARK 500 SER A 276 -151.37 -140.65 REMARK 500 HIS A 408 -71.72 68.40 REMARK 500 ALA A 419 65.69 -118.71 REMARK 500 SER A 500 -93.32 -108.20 REMARK 500 GLU A 601 -52.24 -125.48 REMARK 500 THR A 647 -99.27 -128.90 REMARK 500 TRP A 649 -69.53 77.14 REMARK 500 TYR A 670 -63.94 -123.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 689 ILE A 690 -140.02 REMARK 500 REMARK 500 REMARK: NULL DBREF 4XWH A 24 743 UNP P54802 ANAG_HUMAN 24 743 SEQRES 1 A 720 ASP GLU ALA ARG GLU ALA ALA ALA VAL ARG ALA LEU VAL SEQRES 2 A 720 ALA ARG LEU LEU GLY PRO GLY PRO ALA ALA ASP PHE SER SEQRES 3 A 720 VAL SER VAL GLU ARG ALA LEU ALA ALA LYS PRO GLY LEU SEQRES 4 A 720 ASP THR TYR SER LEU GLY GLY GLY GLY ALA ALA ARG VAL SEQRES 5 A 720 ARG VAL ARG GLY SER THR GLY VAL ALA ALA ALA ALA GLY SEQRES 6 A 720 LEU HIS ARG TYR LEU ARG ASP PHE CYS GLY CYS HIS VAL SEQRES 7 A 720 ALA TRP SER GLY SER GLN LEU ARG LEU PRO ARG PRO LEU SEQRES 8 A 720 PRO ALA VAL PRO GLY GLU LEU THR GLU ALA THR PRO ASN SEQRES 9 A 720 ARG TYR ARG TYR TYR GLN ASN VAL CYS THR GLN SER TYR SEQRES 10 A 720 SER PHE VAL TRP TRP ASP TRP ALA ARG TRP GLU ARG GLU SEQRES 11 A 720 ILE ASP TRP MET ALA LEU ASN GLY ILE ASN LEU ALA LEU SEQRES 12 A 720 ALA TRP SER GLY GLN GLU ALA ILE TRP GLN ARG VAL TYR SEQRES 13 A 720 LEU ALA LEU GLY LEU THR GLN ALA GLU ILE ASN GLU PHE SEQRES 14 A 720 PHE THR GLY PRO ALA PHE LEU ALA TRP GLY ARG MET GLY SEQRES 15 A 720 ASN LEU HIS THR TRP ASP GLY PRO LEU PRO PRO SER TRP SEQRES 16 A 720 HIS ILE LYS GLN LEU TYR LEU GLN HIS ARG VAL LEU ASP SEQRES 17 A 720 GLN MET ARG SER PHE GLY MET THR PRO VAL LEU PRO ALA SEQRES 18 A 720 PHE ALA GLY HIS VAL PRO GLU ALA VAL THR ARG VAL PHE SEQRES 19 A 720 PRO GLN VAL ASN VAL THR LYS MET GLY SER TRP GLY HIS SEQRES 20 A 720 PHE ASN CYS SER TYR SER CYS SER PHE LEU LEU ALA PRO SEQRES 21 A 720 GLU ASP PRO ILE PHE PRO ILE ILE GLY SER LEU PHE LEU SEQRES 22 A 720 ARG GLU LEU ILE LYS GLU PHE GLY THR ASP NEP ILE TYR SEQRES 23 A 720 GLY ALA ASP THR PHE ASN GLU MET GLN PRO PRO SER SER SEQRES 24 A 720 GLU PRO SER TYR LEU ALA ALA ALA THR THR ALA VAL TYR SEQRES 25 A 720 GLU ALA MET THR ALA VAL ASP THR GLU ALA VAL TRP LEU SEQRES 26 A 720 LEU GLN GLY TRP LEU PHE GLN HIS GLN PRO GLN PHE TRP SEQRES 27 A 720 GLY PRO ALA GLN ILE ARG ALA VAL LEU GLY ALA VAL PRO SEQRES 28 A 720 ARG GLY ARG LEU LEU VAL LEU ASP LEU PHE ALA GLU SER SEQRES 29 A 720 GLN PRO VAL TYR THR ARG THR ALA SER PHE GLN GLY GLN SEQRES 30 A 720 PRO PHE ILE TRP CYS MET LEU HIS ASN PHE GLY GLY ASN SEQRES 31 A 720 HIS GLY LEU PHE GLY ALA LEU GLU ALA VAL ASN GLY GLY SEQRES 32 A 720 PRO GLU ALA ALA ARG LEU PHE PRO ASN SER THR MET VAL SEQRES 33 A 720 GLY THR GLY MET ALA PRO GLU GLY ILE SER GLN ASN GLU SEQRES 34 A 720 VAL VAL TYR SER LEU MET ALA GLU LEU GLY TRP ARG LYS SEQRES 35 A 720 ASP PRO VAL PRO ASP LEU ALA ALA TRP VAL THR SER PHE SEQRES 36 A 720 ALA ALA ARG ARG TYR GLY VAL SER HIS PRO ASP ALA GLY SEQRES 37 A 720 ALA ALA TRP ARG LEU LEU LEU ARG SER VAL TYR ASN CYS SEQRES 38 A 720 SER GLY GLU ALA CYS ARG GLY HIS ASN ARG SER PRO LEU SEQRES 39 A 720 VAL ARG ARG PRO SER LEU GLN MET ASN THR SER ILE TRP SEQRES 40 A 720 TYR ASN ARG SER ASP VAL PHE GLU ALA TRP ARG LEU LEU SEQRES 41 A 720 LEU THR SER ALA PRO SER LEU ALA THR SER PRO ALA PHE SEQRES 42 A 720 ARG TYR ASP LEU LEU ASP LEU THR ARG GLN ALA VAL GLN SEQRES 43 A 720 GLU LEU VAL SER LEU TYR TYR GLU GLU ALA ARG SER ALA SEQRES 44 A 720 TYR LEU SER LYS GLU LEU ALA SER LEU LEU ARG ALA GLY SEQRES 45 A 720 GLY VAL LEU ALA TYR GLU LEU LEU PRO ALA LEU ASP GLU SEQRES 46 A 720 VAL LEU ALA SER ASP SER ARG PHE LEU LEU GLY SER TRP SEQRES 47 A 720 LEU GLU GLN ALA ARG ALA ALA ALA VAL SER GLU ALA GLU SEQRES 48 A 720 ALA ASP PHE TYR GLU GLN ASN SER ARG TYR GLN LEU THR SEQRES 49 A 720 LEU TRP GLY PRO GLU GLY ASN ILE LEU ASP TYR ALA ASN SEQRES 50 A 720 LYS GLN LEU ALA GLY LEU VAL ALA ASN TYR TYR THR PRO SEQRES 51 A 720 ARG TRP ARG LEU PHE LEU GLU ALA LEU VAL ASP SER VAL SEQRES 52 A 720 ALA GLN GLY ILE PRO PHE GLN GLN HIS GLN PHE ASP LYS SEQRES 53 A 720 ASN VAL PHE GLN LEU GLU GLN ALA PHE VAL LEU SER LYS SEQRES 54 A 720 GLN ARG TYR PRO SER GLN PRO ARG GLY ASP THR VAL ASP SEQRES 55 A 720 LEU ALA LYS LYS ILE PHE LEU LYS TYR TYR PRO ARG TRP SEQRES 56 A 720 VAL ALA GLY SER TRP MODRES 4XWH NEP A 307 HIS MODIFIED RESIDUE HET NEP A 307 14 HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG A2004 14 HET NAG A2009 14 HET NAG A2010 14 HET GOL A2011 6 HET GOL A2012 6 HET GOL A2013 6 HET XYL A2014 10 HET XYL A2015 10 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM XYL XYLITOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN XYL D-XYLITOL FORMUL 1 NEP C6 H10 N3 O5 P FORMUL 2 NAG 9(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 8 GOL 3(C3 H8 O3) FORMUL 11 XYL 2(C5 H12 O5) FORMUL 13 HOH *279(H2 O) HELIX 1 AA1 ASP A 24 GLY A 41 1 18 HELIX 2 AA2 GLY A 41 ALA A 46 1 6 HELIX 3 AA3 ARG A 54 ALA A 57 5 4 HELIX 4 AA4 THR A 81 PHE A 96 1 16 HELIX 5 AA5 CYS A 136 SER A 141 1 6 HELIX 6 AA6 ASP A 146 ASN A 160 1 15 HELIX 7 AA7 GLY A 170 GLY A 183 1 14 HELIX 8 AA8 THR A 185 PHE A 193 1 9 HELIX 9 AA9 GLY A 195 ALA A 197 5 3 HELIX 10 AB1 PHE A 198 MET A 204 1 7 HELIX 11 AB2 PRO A 215 PHE A 236 1 22 HELIX 12 AB3 ALA A 252 PHE A 257 1 6 HELIX 13 AB4 PRO A 286 GLY A 304 1 19 HELIX 14 AB5 GLU A 323 ALA A 340 1 18 HELIX 15 AB6 GLY A 351 GLN A 357 1 7 HELIX 16 AB7 GLY A 362 GLY A 371 1 10 HELIX 17 AB8 VAL A 390 ARG A 393 5 4 HELIX 18 AB9 THR A 394 GLY A 399 1 6 HELIX 19 AC1 ALA A 419 PHE A 433 1 15 HELIX 20 AC2 ASN A 451 GLY A 462 1 12 HELIX 21 AC3 ASP A 470 GLY A 484 1 15 HELIX 22 AC4 HIS A 487 SER A 500 1 14 HELIX 23 AC5 SER A 515 ARG A 519 5 5 HELIX 24 AC6 ASN A 532 SER A 546 1 15 HELIX 25 AC7 SER A 546 ALA A 551 1 6 HELIX 26 AC8 SER A 553 SER A 585 1 33 HELIX 27 AC9 GLU A 587 GLU A 601 1 15 HELIX 28 AD1 GLU A 601 ALA A 611 1 11 HELIX 29 AD2 SER A 612 PHE A 616 5 5 HELIX 30 AD3 LEU A 617 ALA A 629 1 13 HELIX 31 AD4 SER A 631 THR A 647 1 17 HELIX 32 AD5 GLY A 665 TYR A 670 1 6 HELIX 33 AD6 TYR A 670 GLN A 688 1 19 HELIX 34 AD7 GLN A 693 SER A 711 1 19 HELIX 35 AD8 ASP A 722 GLY A 741 1 20 SHEET 1 AA1 4 PHE A 48 VAL A 52 0 SHEET 2 AA1 4 VAL A 75 GLY A 79 1 O VAL A 75 N SER A 49 SHEET 3 AA1 4 THR A 64 GLY A 69 -1 N GLY A 68 O ARG A 76 SHEET 4 AA1 4 LEU A 121 ALA A 124 -1 O LEU A 121 N LEU A 67 SHEET 1 AA2 2 HIS A 100 ALA A 102 0 SHEET 2 AA2 2 GLY A 105 GLN A 107 -1 O GLN A 107 N HIS A 100 SHEET 1 AA3 9 TYR A 129 TYR A 132 0 SHEET 2 AA3 9 LEU A 164 LEU A 166 1 O LEU A 164 N ARG A 130 SHEET 3 AA3 9 THR A 239 PRO A 243 1 O VAL A 241 N ALA A 165 SHEET 4 AA3 9 ILE A 308 GLY A 310 1 O GLY A 310 N LEU A 242 SHEET 5 AA3 9 VAL A 346 GLN A 350 1 O LEU A 348 N TYR A 309 SHEET 6 AA3 9 LEU A 378 ASP A 382 1 O LEU A 381 N LEU A 349 SHEET 7 AA3 9 PHE A 402 MET A 406 1 O ILE A 403 N ASP A 382 SHEET 8 AA3 9 MET A 438 MET A 443 1 O VAL A 439 N PHE A 402 SHEET 9 AA3 9 TYR A 129 TYR A 132 1 N TYR A 131 O THR A 441 SHEET 1 AA4 3 HIS A 248 VAL A 249 0 SHEET 2 AA4 3 PHE A 279 LEU A 281 -1 O PHE A 279 N VAL A 249 SHEET 3 AA4 3 VAL A 262 LYS A 264 -1 N THR A 263 O LEU A 280 SSBOND 1 CYS A 273 CYS A 277 1555 1555 2.23 SSBOND 2 CYS A 504 CYS A 509 1555 1555 2.16 LINK ND2 ASN A 261 C1 NAG A2004 1555 1555 1.47 LINK ND2 ASN A 272 C1 NAG B 1 1555 1555 1.44 LINK C ASP A 306 N NEP A 307 1555 1555 1.34 LINK C NEP A 307 N ILE A 308 1555 1555 1.34 LINK ND2 ASN A 435 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 503 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 526 C1 NAG A2009 1555 1555 1.48 LINK ND2 ASN A 532 C1 NAG A2010 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.48 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.47 CISPEP 1 ARG A 112 PRO A 113 0 1.14 CISPEP 2 GLY A 212 PRO A 213 0 4.40 CRYST1 205.088 205.088 78.398 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004876 0.002815 0.000000 0.00000 SCALE2 0.000000 0.005630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012755 0.00000