PDB Short entry for 4XYN HEADER MEMBRANE PROTEIN, METAL BINDING PROTEIN 02-FEB-15 4XYN TITLE X-RAY STRUCTURE OF CA(2+)-S100B WITH HUMAN RAGE-DERIVED W61 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR FOR ADVANCED GLYCATION ENDPRODUCTS-DERIVED PEPTIDE COMPND 3 (W61); COMPND 4 CHAIN: P; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN S100-B; COMPND 8 CHAIN: A, B, C, D; COMPND 9 SYNONYM: S-100 PROTEIN BETA CHAIN,S-100 PROTEIN SUBUNIT BETA,S100 COMPND 10 CALCIUM-BINDING PROTEIN B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: S100B; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.L.JENSEN,V.S.K.INDURTHI,D.NEAU,S.W.VETTER,C.L.COLBERT REVDAT 5 28-FEB-24 4XYN 1 REMARK LINK REVDAT 4 22-NOV-17 4XYN 1 SOURCE REMARK REVDAT 3 27-MAY-15 4XYN 1 REMARK REVDAT 2 20-MAY-15 4XYN 1 JRNL REVDAT 1 13-MAY-15 4XYN 0 SPRSDE 13-MAY-15 4XYN 4N6I JRNL AUTH J.L.JENSEN,V.S.INDURTHI,D.B.NEAU,S.W.VETTER,C.L.COLBERT JRNL TITL STRUCTURAL INSIGHTS INTO THE BINDING OF THE HUMAN RECEPTOR JRNL TITL 2 FOR ADVANCED GLYCATION END PRODUCTS (RAGE) BY S100B, AS JRNL TITL 3 REVEALED BY AN S100B-RAGE-DERIVED PEPTIDE COMPLEX. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1176 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 25945582 JRNL DOI 10.1107/S1399004715004216 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 12927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.8941 - 4.3582 0.90 2444 122 0.1796 0.2244 REMARK 3 2 4.3582 - 3.4594 0.96 2456 137 0.1742 0.2197 REMARK 3 3 3.4594 - 3.0221 0.97 2468 126 0.2351 0.2897 REMARK 3 4 3.0221 - 2.7458 0.97 2428 130 0.2495 0.3282 REMARK 3 5 2.7458 - 2.5500 0.98 2492 124 0.2779 0.3651 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3051 REMARK 3 ANGLE : 1.500 4081 REMARK 3 CHIRALITY : 0.066 442 REMARK 3 PLANARITY : 0.008 534 REMARK 3 DIHEDRAL : 14.132 1148 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, AUTOPROC, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 53.882 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CACODYLATE, PH 6.8, 25% W/V REMARK 280 PEG 3350, 9MM CACL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.39250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.34200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.39250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.34200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN P 54 REMARK 465 THR P 55 REMARK 465 GLY P 56 REMARK 465 PRO P 66 REMARK 465 GLN P 67 REMARK 465 GLY P 68 REMARK 465 HIS A 91 REMARK 465 GLU A 92 REMARK 465 GLU B 92 REMARK 465 GLU C 92 REMARK 465 PHE D 89 REMARK 465 GLU D 90 REMARK 465 HIS D 91 REMARK 465 GLU D 92 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU P 64 CB CG CD1 CD2 REMARK 480 GLN A 17 CG CD OE1 NE2 REMARK 480 GLU A 22 CG CD OE1 OE2 REMARK 480 LYS A 25 CD CE NZ REMARK 480 LYS A 27 CE NZ REMARK 480 LYS A 29 CE NZ REMARK 480 LYS A 30 CG CD CE NZ REMARK 480 LYS A 34 CE NZ REMARK 480 GLU A 46 CB CG CD OE1 OE2 REMARK 480 LYS A 49 CB CG CD CE NZ REMARK 480 GLU A 50 CB CG CD OE1 OE2 REMARK 480 GLN A 51 CG CD OE1 NE2 REMARK 480 VAL A 54 CB CG1 CG2 REMARK 480 LYS A 56 CG CD CE NZ REMARK 480 GLU A 59 CG CD OE1 OE2 REMARK 480 ALA A 84 CB REMARK 480 GLU A 87 CD OE1 OE2 REMARK 480 LYS B 25 CG CD CE NZ REMARK 480 LYS B 27 CE NZ REMARK 480 LYS B 30 CE NZ REMARK 480 LYS B 34 NZ REMARK 480 GLU B 35 CG CD OE1 OE2 REMARK 480 GLU B 46 CG CD OE1 OE2 REMARK 480 LYS B 49 CG CD CE NZ REMARK 480 GLU B 50 CG CD OE1 OE2 REMARK 480 GLU B 52 CB CG CD OE1 OE2 REMARK 480 LYS B 56 CD CE NZ REMARK 480 GLN B 72 CD OE1 NE2 REMARK 480 GLU B 87 CB CG CD OE1 OE2 REMARK 480 PHE B 88 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU B 90 CG CD OE1 OE2 REMARK 480 LYS C 6 CE NZ REMARK 480 GLN C 17 CG CD OE1 NE2 REMARK 480 LYS C 25 CD CE NZ REMARK 480 HIS C 26 CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS C 27 CG CD CE NZ REMARK 480 LYS C 29 CB CG CD CE NZ REMARK 480 LYS C 30 CD CE NZ REMARK 480 GLU C 35 CB CG CD OE1 OE2 REMARK 480 GLU C 46 CB CG CD OE1 OE2 REMARK 480 GLU C 52 CB CG CD OE1 OE2 REMARK 480 LYS C 56 CG CD CE NZ REMARK 480 GLU C 59 CG CD OE1 OE2 REMARK 480 ASN C 63 CG OD1 ND2 REMARK 480 ASP C 66 CB CG OD1 OD2 REMARK 480 GLN C 72 CB CG CD OE1 NE2 REMARK 480 GLU C 87 CB CG CD OE1 OE2 REMARK 480 PHE C 88 CG CD1 CD2 CE1 CE2 CZ REMARK 480 HIS C 91 CB CG ND1 CD2 CE1 NE2 REMARK 480 GLN D 17 CG CD OE1 NE2 REMARK 480 ARG D 21 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS D 25 CG CD CE NZ REMARK 480 LYS D 27 CB CG CD CE NZ REMARK 480 LYS D 29 CB CG CD CE NZ REMARK 480 LYS D 30 CB CG CD CE NZ REMARK 480 LEU D 33 CG CD1 CD2 REMARK 480 LYS D 34 CB CG CD CE NZ REMARK 480 GLU D 35 CB CG CD OE1 OE2 REMARK 480 ILE D 37 CG1 CG2 CD1 REMARK 480 ASN D 38 CB CG OD1 ND2 REMARK 480 ASN D 39 OD1 ND2 REMARK 480 PHE D 44 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 LEU D 45 CB CG CD1 CD2 REMARK 480 GLU D 46 CB CG CD OE1 OE2 REMARK 480 GLU D 47 CB CG CD OE1 OE2 REMARK 480 ILE D 48 CB CG1 CG2 CD1 REMARK 480 LYS D 49 CB CG CD CE NZ REMARK 480 GLU D 50 CB CG CD OE1 OE2 REMARK 480 GLN D 51 CB CG CD OE1 NE2 REMARK 480 GLU D 52 CB CG CD OE1 OE2 REMARK 480 VAL D 54 CB CG1 CG2 REMARK 480 ASP D 55 CG OD1 OD2 REMARK 480 LYS D 56 CB CG CD CE NZ REMARK 480 VAL D 57 CB CG1 CG2 REMARK 480 GLU D 59 CB CG CD OE1 OE2 REMARK 480 ASN D 63 CG OD1 ND2 REMARK 480 MET D 80 CB CG SD CE REMARK 480 THR D 83 CB OG1 CG2 REMARK 480 ALA D 84 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS B 30 OD1 ASP B 55 1.47 REMARK 500 OD1 ASP C 66 O HOH C 602 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU P 64 -68.03 -122.55 REMARK 500 PHE B 88 -9.94 -53.88 REMARK 500 ASP C 62 98.80 -69.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 19 O REMARK 620 2 GLU A 22 O 100.7 REMARK 620 3 ASP A 24 O 73.2 75.9 REMARK 620 4 LYS A 27 O 75.7 157.1 81.5 REMARK 620 5 GLU A 32 OE1 120.7 114.0 158.6 86.3 REMARK 620 6 GLU A 32 OE2 94.3 75.0 145.4 127.4 54.5 REMARK 620 7 HOH A 606 O 140.2 85.2 70.2 83.9 91.1 124.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 62 OD1 REMARK 620 2 ASP A 64 OD1 83.2 REMARK 620 3 ASP A 66 OD1 75.1 79.7 REMARK 620 4 GLU A 68 O 92.2 155.4 75.7 REMARK 620 5 GLU A 73 OE1 133.5 126.6 137.6 73.1 REMARK 620 6 GLU A 73 OE2 104.5 85.8 165.4 118.7 52.6 REMARK 620 7 HOH A 605 O 145.6 88.4 70.5 81.8 77.1 108.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 19 O REMARK 620 2 GLU B 22 O 102.3 REMARK 620 3 ASP B 24 O 83.9 86.6 REMARK 620 4 LYS B 27 O 89.3 162.9 82.2 REMARK 620 5 GLU B 32 OE1 104.3 110.7 158.2 77.8 REMARK 620 6 GLU B 32 OE2 78.4 75.4 151.2 119.7 50.2 REMARK 620 7 HOH B 603 O 161.2 91.7 84.5 74.5 81.9 117.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 62 OD1 REMARK 620 2 ASP B 64 OD1 81.3 REMARK 620 3 ASP B 66 OD1 74.1 86.5 REMARK 620 4 GLU B 68 O 84.7 160.3 76.3 REMARK 620 5 GLU B 73 OE1 115.8 120.0 152.1 78.6 REMARK 620 6 GLU B 73 OE2 86.7 79.2 157.6 113.8 48.1 REMARK 620 7 HOH B 604 O 157.9 88.4 85.9 99.8 86.3 110.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 19 O REMARK 620 2 GLU C 22 O 91.4 REMARK 620 3 ASP C 24 O 82.5 91.8 REMARK 620 4 LYS C 27 O 90.9 170.5 79.4 REMARK 620 5 GLU C 32 OE1 102.3 102.6 164.6 85.9 REMARK 620 6 GLU C 32 OE2 75.2 64.2 146.2 125.3 48.4 REMARK 620 7 HOH C 601 O 168.8 78.5 92.8 98.2 84.9 104.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 62 OD1 REMARK 620 2 ASP C 64 OD1 75.2 REMARK 620 3 ASP C 64 OD2 108.8 46.2 REMARK 620 4 ASP C 66 OD1 86.8 57.8 90.7 REMARK 620 5 GLU C 68 O 89.6 149.8 160.7 96.0 REMARK 620 6 GLU C 73 OE1 123.1 128.6 83.5 149.8 81.6 REMARK 620 7 GLU C 73 OE2 79.6 91.7 68.1 149.1 111.4 53.2 REMARK 620 8 HOH C 602 O 128.5 93.4 96.2 47.6 75.6 103.4 151.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER D 19 O REMARK 620 2 GLU D 22 O 105.8 REMARK 620 3 ASP D 24 O 82.9 88.1 REMARK 620 4 LYS D 27 O 90.1 159.9 81.5 REMARK 620 5 GLU D 32 OE1 114.0 105.4 153.5 78.3 REMARK 620 6 GLU D 32 OE2 89.8 65.7 149.9 127.9 54.7 REMARK 620 7 HOH D 602 O 142.8 86.7 62.2 73.3 95.3 126.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 62 OD1 REMARK 620 2 ASP D 64 OD1 82.4 REMARK 620 3 ASP D 66 OD1 110.3 76.1 REMARK 620 4 GLU D 68 O 120.6 157.0 92.8 REMARK 620 5 GLU D 73 OE1 112.7 109.0 137.0 65.7 REMARK 620 6 GLU D 73 OE2 78.4 77.9 151.0 106.6 44.1 REMARK 620 7 HOH D 603 O 146.1 66.7 76.5 91.3 67.8 81.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 502 DBREF 4XYN P 54 68 PDB 4XYN 4XYN 54 68 DBREF 4XYN A 1 92 UNP P04271 S100B_HUMAN 1 92 DBREF 4XYN B 1 92 UNP P04271 S100B_HUMAN 1 92 DBREF 4XYN C 1 92 UNP P04271 S100B_HUMAN 1 92 DBREF 4XYN D 1 92 UNP P04271 S100B_HUMAN 1 92 SEQRES 1 P 15 ASN THR GLY ARG THR GLU ALA TRP LYS VAL LEU SER PRO SEQRES 2 P 15 GLN GLY SEQRES 1 A 92 MET SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP SEQRES 2 A 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 A 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 A 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 A 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY SEQRES 6 A 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 A 92 ALA MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS SEQRES 8 A 92 GLU SEQRES 1 B 92 MET SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP SEQRES 2 B 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 B 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 B 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 B 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY SEQRES 6 B 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 B 92 ALA MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS SEQRES 8 B 92 GLU SEQRES 1 C 92 MET SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP SEQRES 2 C 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 C 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 C 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 C 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY SEQRES 6 C 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 C 92 ALA MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS SEQRES 8 C 92 GLU SEQRES 1 D 92 MET SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP SEQRES 2 D 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS SEQRES 3 D 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN SEQRES 4 D 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU SEQRES 5 D 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY SEQRES 6 D 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL SEQRES 7 D 92 ALA MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS SEQRES 8 D 92 GLU HET CA A 501 1 HET CA A 502 1 HET CA B 501 1 HET CA B 502 1 HET CA C 501 1 HET CA C 502 1 HET CA D 501 1 HET CA D 502 1 HETNAM CA CALCIUM ION FORMUL 6 CA 8(CA 2+) FORMUL 14 HOH *35(H2 O) HELIX 1 AA1 GLU P 59 VAL P 63 5 5 HELIX 2 AA2 SER A 2 GLY A 20 1 19 HELIX 3 AA3 LYS A 29 LEU A 41 1 13 HELIX 4 AA4 GLU A 50 ASP A 62 1 13 HELIX 5 AA5 ASP A 70 GLU A 87 1 18 HELIX 6 AA6 PHE A 88 GLU A 90 5 3 HELIX 7 AA7 SER B 2 GLY B 20 1 19 HELIX 8 AA8 LYS B 29 LEU B 41 1 13 HELIX 9 AA9 GLU B 50 ASP B 62 1 13 HELIX 10 AB1 PHE B 71 PHE B 88 1 18 HELIX 11 AB2 SER C 2 GLY C 20 1 19 HELIX 12 AB3 LYS C 29 LEU C 41 1 13 HELIX 13 AB4 GLU C 50 ASP C 62 1 13 HELIX 14 AB5 ASP C 70 PHE C 88 1 19 HELIX 15 AB6 SER D 2 GLY D 20 1 19 HELIX 16 AB7 LYS D 29 LEU D 41 1 13 HELIX 17 AB8 GLU D 50 ASP D 62 1 13 HELIX 18 AB9 ASP D 70 HIS D 86 1 17 SHEET 1 AA1 2 LYS B 27 LEU B 28 0 SHEET 2 AA1 2 CYS B 69 ASP B 70 -1 O CYS B 69 N LEU B 28 LINK O SER A 19 CA CA A 502 1555 1555 2.22 LINK O GLU A 22 CA CA A 502 1555 1555 2.65 LINK O ASP A 24 CA CA A 502 1555 1555 2.45 LINK O LYS A 27 CA CA A 502 1555 1555 2.64 LINK OE1 GLU A 32 CA CA A 502 1555 1555 2.20 LINK OE2 GLU A 32 CA CA A 502 1555 1555 2.53 LINK OD1 ASP A 62 CA CA A 501 1555 1555 2.54 LINK OD1 ASP A 64 CA CA A 501 1555 1555 2.35 LINK OD1 ASP A 66 CA CA A 501 1555 1555 2.49 LINK O GLU A 68 CA CA A 501 1555 1555 2.37 LINK OE1 GLU A 73 CA CA A 501 1555 1555 2.45 LINK OE2 GLU A 73 CA CA A 501 1555 1555 2.56 LINK CA CA A 501 O HOH A 605 1555 1555 2.50 LINK CA CA A 502 O HOH A 606 1555 1555 2.13 LINK O SER B 19 CA CA B 502 1555 1555 2.29 LINK O GLU B 22 CA CA B 502 1555 1555 2.35 LINK O ASP B 24 CA CA B 502 1555 1555 2.26 LINK O LYS B 27 CA CA B 502 1555 1555 2.49 LINK OE1 GLU B 32 CA CA B 502 1555 1555 2.44 LINK OE2 GLU B 32 CA CA B 502 1555 1555 2.70 LINK OD1 ASP B 62 CA CA B 501 1555 1555 2.38 LINK OD1 ASP B 64 CA CA B 501 1555 1555 2.15 LINK OD1 ASP B 66 CA CA B 501 1555 1555 2.53 LINK O GLU B 68 CA CA B 501 1555 1555 2.40 LINK OE1 GLU B 73 CA CA B 501 1555 1555 2.76 LINK OE2 GLU B 73 CA CA B 501 1555 1555 2.73 LINK CA CA B 501 O HOH B 604 1555 1555 2.11 LINK CA CA B 502 O HOH B 603 1555 1555 2.34 LINK O SER C 19 CA CA C 501 1555 1555 2.25 LINK O GLU C 22 CA CA C 501 1555 1555 2.71 LINK O ASP C 24 CA CA C 501 1555 1555 2.36 LINK O LYS C 27 CA CA C 501 1555 1555 2.36 LINK OE1 GLU C 32 CA CA C 501 1555 1555 2.46 LINK OE2 GLU C 32 CA CA C 501 1555 1555 2.88 LINK OD1 ASP C 62 CA CA C 502 1555 1555 2.75 LINK OD1 ASP C 64 CA CA C 502 1555 1555 2.73 LINK OD2 ASP C 64 CA CA C 502 1555 1555 2.80 LINK OD1 ASP C 66 CA CA C 502 1555 1555 2.68 LINK O GLU C 68 CA CA C 502 1555 1555 2.52 LINK OE1 GLU C 73 CA CA C 502 1555 1555 2.42 LINK OE2 GLU C 73 CA CA C 502 1555 1555 2.44 LINK CA CA C 501 O HOH C 601 1555 1555 2.42 LINK CA CA C 502 O HOH C 602 1555 1555 2.18 LINK O SER D 19 CA CA D 501 1555 1555 2.23 LINK O GLU D 22 CA CA D 501 1555 1555 2.60 LINK O ASP D 24 CA CA D 501 1555 1555 2.24 LINK O LYS D 27 CA CA D 501 1555 1555 2.46 LINK OE1 GLU D 32 CA CA D 501 1555 1555 2.29 LINK OE2 GLU D 32 CA CA D 501 1555 1555 2.52 LINK OD1 ASP D 62 CA CA D 502 1555 1555 2.59 LINK OD1 ASP D 64 CA CA D 502 1555 1555 2.78 LINK OD1 ASP D 66 CA CA D 502 1555 1555 2.40 LINK O GLU D 68 CA CA D 502 1555 1555 2.32 LINK OE1 GLU D 73 CA CA D 502 1555 1555 3.03 LINK OE2 GLU D 73 CA CA D 502 1555 1555 2.79 LINK CA CA D 501 O HOH D 602 1555 1555 2.32 LINK CA CA D 502 O HOH D 603 1555 1555 2.42 SITE 1 AC1 6 ASP A 62 ASP A 64 ASP A 66 GLU A 68 SITE 2 AC1 6 GLU A 73 HOH A 605 SITE 1 AC2 6 SER A 19 GLU A 22 ASP A 24 LYS A 27 SITE 2 AC2 6 GLU A 32 HOH A 606 SITE 1 AC3 6 ASP B 62 ASP B 64 ASP B 66 GLU B 68 SITE 2 AC3 6 GLU B 73 HOH B 604 SITE 1 AC4 6 SER B 19 GLU B 22 ASP B 24 LYS B 27 SITE 2 AC4 6 GLU B 32 HOH B 603 SITE 1 AC5 6 SER C 19 GLU C 22 ASP C 24 LYS C 27 SITE 2 AC5 6 GLU C 32 HOH C 601 SITE 1 AC6 5 ASP C 62 ASP C 64 GLU C 68 GLU C 73 SITE 2 AC6 5 HOH C 602 SITE 1 AC7 6 SER D 19 GLU D 22 ASP D 24 LYS D 27 SITE 2 AC7 6 GLU D 32 HOH D 602 SITE 1 AC8 6 ASP D 62 ASP D 64 ASP D 66 GLU D 68 SITE 2 AC8 6 GLU D 73 HOH D 603 CRYST1 68.785 86.684 66.534 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015030 0.00000