PDB Short entry for 4Y30 HEADER TRANSFERASE 10-FEB-15 4Y30 TITLE CRYSTAL STRUCTURE OF HUMAN PROTEIN ARGININE METHYLTRANSFERASE PRMT6 TITLE 2 BOUND TO SAH AND EPZ020411 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 25-375; COMPND 5 SYNONYM: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN METHYLTRANSFERASE- COMPND 6 LIKE PROTEIN 6,HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6; COMPND 7 EC: 2.1.1.-,2.1.1.125; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT6, HRMT1L6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.K.SWINGER,P.A.BORIACK-SJODIN REVDAT 3 28-FEB-24 4Y30 1 SOURCE REMARK LINK REVDAT 2 08-JUL-15 4Y30 1 JRNL REVDAT 1 22-APR-15 4Y30 0 JRNL AUTH L.H.MITCHELL,A.E.DREW,S.A.RIBICH,N.RIOUX,K.K.SWINGER, JRNL AUTH 2 S.L.JACQUES,T.LINGARAJ,P.A.BORIACK-SJODIN,N.J.WATERS, JRNL AUTH 3 T.J.WIGLE,O.MORADEI,L.JIN,T.RIERA,M.PORTER-SCOTT,M.P.MOYER, JRNL AUTH 4 J.J.SMITH,R.CHESWORTH,R.A.COPELAND JRNL TITL ARYL PYRAZOLES AS POTENT INHIBITORS OF ARGININE JRNL TITL 2 METHYLTRANSFERASES: IDENTIFICATION OF THE FIRST PRMT6 TOOL JRNL TITL 3 COMPOUND. JRNL REF ACS MED.CHEM.LETT. V. 6 655 2015 JRNL REFN ISSN 1948-5875 JRNL PMID 26101569 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00071 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 50960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3540 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5445 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 514 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.729 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5827 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5501 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7906 ; 1.386 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12642 ; 0.996 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 714 ; 5.935 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;36.088 ;22.971 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 966 ;13.849 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;17.380 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 842 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6607 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1389 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2822 ; 1.176 ; 1.598 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2823 ; 1.176 ; 1.597 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3540 ; 2.030 ; 2.388 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 39 374 B 39 374 19680 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4Y30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 99.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL, MES BUFFER PH 6.5, ISOPROPANOL, REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.62600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.93900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.31300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 25 REMARK 465 GLY A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 ARG A 29 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 LEU A 33 REMARK 465 GLU A 34 REMARK 465 ARG A 35 REMARK 465 PRO A 36 REMARK 465 ARG A 37 REMARK 465 ARG A 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 239 O HOH B 755 2.03 REMARK 500 OE2 GLU A 264 O HOH A 731 2.16 REMARK 500 OG SER B 282 OE1 GLU B 332 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 336 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 LEU B 46 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 161 -54.12 69.21 REMARK 500 GLU A 164 -23.69 86.84 REMARK 500 GLU A 164 -23.71 86.84 REMARK 500 ALA A 283 148.91 -175.42 REMARK 500 LYS A 319 -135.95 49.84 REMARK 500 LEU B 161 -54.40 70.84 REMARK 500 GLU B 164 -25.35 88.01 REMARK 500 GLU B 164 -23.92 88.01 REMARK 500 GLU B 300 -84.07 -55.38 REMARK 500 LYS B 319 -136.42 52.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 507 O REMARK 620 2 HOH A 511 O 92.1 REMARK 620 3 HOH A 536 O 97.9 91.6 REMARK 620 4 HOH A 580 O 87.0 179.0 88.0 REMARK 620 5 HOH A 581 O 177.5 90.4 82.2 90.4 REMARK 620 6 HOH A 736 O 84.4 82.4 173.7 98.1 95.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 49L A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 49L B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y2H RELATED DB: PDB DBREF 4Y30 A 25 375 UNP Q96LA8 ANM6_HUMAN 25 375 DBREF 4Y30 B 25 375 UNP Q96LA8 ANM6_HUMAN 25 375 SEQADV 4Y30 GLN A 268 UNP Q96LA8 GLU 268 CONFLICT SEQADV 4Y30 GLN B 268 UNP Q96LA8 GLU 268 CONFLICT SEQRES 1 A 351 ASP GLY ALA GLU ARG GLU ALA ALA LEU GLU ARG PRO ARG SEQRES 2 A 351 ARG THR LYS ARG GLU ARG ASP GLN LEU TYR TYR GLU CYS SEQRES 3 A 351 TYR SER ASP VAL SER VAL HIS GLU GLU MET ILE ALA ASP SEQRES 4 A 351 ARG VAL ARG THR ASP ALA TYR ARG LEU GLY ILE LEU ARG SEQRES 5 A 351 ASN TRP ALA ALA LEU ARG GLY LYS THR VAL LEU ASP VAL SEQRES 6 A 351 GLY ALA GLY THR GLY ILE LEU SER ILE PHE CYS ALA GLN SEQRES 7 A 351 ALA GLY ALA ARG ARG VAL TYR ALA VAL GLU ALA SER ALA SEQRES 8 A 351 ILE TRP GLN GLN ALA ARG GLU VAL VAL ARG PHE ASN GLY SEQRES 9 A 351 LEU GLU ASP ARG VAL HIS VAL LEU PRO GLY PRO VAL GLU SEQRES 10 A 351 THR VAL GLU LEU PRO GLU GLN VAL ASP ALA ILE VAL SER SEQRES 11 A 351 GLU TRP MET GLY TYR GLY LEU LEU HIS GLU SER MET LEU SEQRES 12 A 351 SER SER VAL LEU HIS ALA ARG THR LYS TRP LEU LYS GLU SEQRES 13 A 351 GLY GLY LEU LEU LEU PRO ALA SER ALA GLU LEU PHE ILE SEQRES 14 A 351 ALA PRO ILE SER ASP GLN MET LEU GLU TRP ARG LEU GLY SEQRES 15 A 351 PHE TRP SER GLN VAL LYS GLN HIS TYR GLY VAL ASP MET SEQRES 16 A 351 SER CYS LEU GLU GLY PHE ALA THR ARG CYS LEU MET GLY SEQRES 17 A 351 HIS SER GLU ILE VAL VAL GLN GLY LEU SER GLY GLU ASP SEQRES 18 A 351 VAL LEU ALA ARG PRO GLN ARG PHE ALA GLN LEU GLU LEU SEQRES 19 A 351 SER ARG ALA GLY LEU GLU GLN GLU LEU GLN ALA GLY VAL SEQRES 20 A 351 GLY GLY ARG PHE ARG CYS SER CYS TYR GLY SER ALA PRO SEQRES 21 A 351 MET HIS GLY PHE ALA ILE TRP PHE GLN VAL THR PHE PRO SEQRES 22 A 351 GLY GLY GLU SER GLU LYS PRO LEU VAL LEU SER THR SER SEQRES 23 A 351 PRO PHE HIS PRO ALA THR HIS TRP LYS GLN ALA LEU LEU SEQRES 24 A 351 TYR LEU ASN GLU PRO VAL GLN VAL GLU GLN ASP THR ASP SEQRES 25 A 351 VAL SER GLY GLU ILE THR LEU LEU PRO SER ARG ASP ASN SEQRES 26 A 351 PRO ARG ARG LEU ARG VAL LEU LEU ARG TYR LYS VAL GLY SEQRES 27 A 351 ASP GLN GLU GLU LYS THR LYS ASP PHE ALA MET GLU ASP SEQRES 1 B 351 ASP GLY ALA GLU ARG GLU ALA ALA LEU GLU ARG PRO ARG SEQRES 2 B 351 ARG THR LYS ARG GLU ARG ASP GLN LEU TYR TYR GLU CYS SEQRES 3 B 351 TYR SER ASP VAL SER VAL HIS GLU GLU MET ILE ALA ASP SEQRES 4 B 351 ARG VAL ARG THR ASP ALA TYR ARG LEU GLY ILE LEU ARG SEQRES 5 B 351 ASN TRP ALA ALA LEU ARG GLY LYS THR VAL LEU ASP VAL SEQRES 6 B 351 GLY ALA GLY THR GLY ILE LEU SER ILE PHE CYS ALA GLN SEQRES 7 B 351 ALA GLY ALA ARG ARG VAL TYR ALA VAL GLU ALA SER ALA SEQRES 8 B 351 ILE TRP GLN GLN ALA ARG GLU VAL VAL ARG PHE ASN GLY SEQRES 9 B 351 LEU GLU ASP ARG VAL HIS VAL LEU PRO GLY PRO VAL GLU SEQRES 10 B 351 THR VAL GLU LEU PRO GLU GLN VAL ASP ALA ILE VAL SER SEQRES 11 B 351 GLU TRP MET GLY TYR GLY LEU LEU HIS GLU SER MET LEU SEQRES 12 B 351 SER SER VAL LEU HIS ALA ARG THR LYS TRP LEU LYS GLU SEQRES 13 B 351 GLY GLY LEU LEU LEU PRO ALA SER ALA GLU LEU PHE ILE SEQRES 14 B 351 ALA PRO ILE SER ASP GLN MET LEU GLU TRP ARG LEU GLY SEQRES 15 B 351 PHE TRP SER GLN VAL LYS GLN HIS TYR GLY VAL ASP MET SEQRES 16 B 351 SER CYS LEU GLU GLY PHE ALA THR ARG CYS LEU MET GLY SEQRES 17 B 351 HIS SER GLU ILE VAL VAL GLN GLY LEU SER GLY GLU ASP SEQRES 18 B 351 VAL LEU ALA ARG PRO GLN ARG PHE ALA GLN LEU GLU LEU SEQRES 19 B 351 SER ARG ALA GLY LEU GLU GLN GLU LEU GLN ALA GLY VAL SEQRES 20 B 351 GLY GLY ARG PHE ARG CYS SER CYS TYR GLY SER ALA PRO SEQRES 21 B 351 MET HIS GLY PHE ALA ILE TRP PHE GLN VAL THR PHE PRO SEQRES 22 B 351 GLY GLY GLU SER GLU LYS PRO LEU VAL LEU SER THR SER SEQRES 23 B 351 PRO PHE HIS PRO ALA THR HIS TRP LYS GLN ALA LEU LEU SEQRES 24 B 351 TYR LEU ASN GLU PRO VAL GLN VAL GLU GLN ASP THR ASP SEQRES 25 B 351 VAL SER GLY GLU ILE THR LEU LEU PRO SER ARG ASP ASN SEQRES 26 B 351 PRO ARG ARG LEU ARG VAL LEU LEU ARG TYR LYS VAL GLY SEQRES 27 B 351 ASP GLN GLU GLU LYS THR LYS ASP PHE ALA MET GLU ASP HET SAH A 401 26 HET 49L A 402 32 HET MG A 403 1 HET GOL A 404 6 HET GOL A 405 6 HET SAH B 401 26 HET 49L B 402 32 HET GOL B 403 6 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM 49L N,N'-DIMETHYL-N-({3-[4-({TRANS-3-[2-(TETRAHYDRO-2H- HETNAM 2 49L PYRAN-4-YL)ETHOXY]CYCLOBUTYL}OXY)PHENYL]-1H-PYRAZOL-4- HETNAM 3 49L YL}METHYL)ETHANE-1,2-DIAMINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 49L 2(C25 H38 N4 O3) FORMUL 5 MG MG 2+ FORMUL 6 GOL 3(C3 H8 O3) FORMUL 11 HOH *514(H2 O) HELIX 1 AA1 THR A 39 ASP A 53 1 15 HELIX 2 AA2 ASP A 53 ASP A 63 1 11 HELIX 3 AA3 ASP A 63 ASN A 77 1 15 HELIX 4 AA4 ASN A 77 ARG A 82 1 6 HELIX 5 AA5 GLY A 94 ALA A 103 1 10 HELIX 6 AA6 ILE A 116 ASN A 127 1 12 HELIX 7 AA7 MET A 166 TRP A 177 1 12 HELIX 8 AA8 ASP A 198 PHE A 207 1 10 HELIX 9 AA9 GLN A 210 GLY A 216 1 7 HELIX 10 AB1 MET A 219 CYS A 221 5 3 HELIX 11 AB2 LEU A 222 GLY A 232 1 11 HELIX 12 AB3 SER A 242 VAL A 246 5 5 HELIX 13 AB4 GLY A 262 GLY A 270 1 9 HELIX 14 AB5 GLY B 26 CYS B 50 1 25 HELIX 15 AB6 ASP B 53 ASP B 63 1 11 HELIX 16 AB7 ASP B 63 ASN B 77 1 15 HELIX 17 AB8 ASN B 77 ARG B 82 1 6 HELIX 18 AB9 GLY B 94 ALA B 103 1 10 HELIX 19 AC1 ILE B 116 ASN B 127 1 12 HELIX 20 AC2 MET B 166 TRP B 177 1 12 HELIX 21 AC3 ASP B 198 PHE B 207 1 10 HELIX 22 AC4 GLN B 210 GLY B 216 1 7 HELIX 23 AC5 MET B 219 CYS B 221 5 3 HELIX 24 AC6 LEU B 222 GLY B 232 1 11 HELIX 25 AC7 SER B 242 VAL B 246 5 5 HELIX 26 AC8 GLY B 262 GLY B 270 1 9 SHEET 1 AA1 5 VAL A 133 PRO A 137 0 SHEET 2 AA1 5 ARG A 107 GLU A 112 1 N VAL A 108 O HIS A 134 SHEET 3 AA1 5 THR A 85 VAL A 89 1 N VAL A 86 O TYR A 109 SHEET 4 AA1 5 VAL A 149 VAL A 153 1 O VAL A 153 N LEU A 87 SHEET 5 AA1 5 LEU A 178 LEU A 185 1 O LYS A 179 N VAL A 149 SHEET 1 AA2 9 GLN A 251 GLU A 257 0 SHEET 2 AA2 9 SER A 188 ILE A 196 -1 N ALA A 189 O LEU A 256 SHEET 3 AA2 9 ALA A 283 PHE A 296 -1 O GLY A 287 N ILE A 196 SHEET 4 AA2 9 GLN A 320 VAL A 331 -1 O LEU A 323 N PHE A 288 SHEET 5 AA2 9 GLU A 235 GLN A 239 -1 N VAL A 237 O LEU A 322 SHEET 6 AA2 9 LYS A 367 MET A 373 1 O ALA A 372 N ILE A 236 SHEET 7 AA2 9 LEU A 353 VAL A 361 -1 N TYR A 359 O LYS A 367 SHEET 8 AA2 9 ASP A 336 PRO A 345 -1 N SER A 338 O LYS A 360 SHEET 9 AA2 9 VAL A 271 SER A 278 -1 N VAL A 271 O LEU A 343 SHEET 1 AA3 4 GLN A 251 GLU A 257 0 SHEET 2 AA3 4 SER A 188 ILE A 196 -1 N ALA A 189 O LEU A 256 SHEET 3 AA3 4 ALA A 283 PHE A 296 -1 O GLY A 287 N ILE A 196 SHEET 4 AA3 4 LEU A 305 SER A 308 -1 O LEU A 307 N VAL A 294 SHEET 1 AA4 5 VAL B 133 PRO B 137 0 SHEET 2 AA4 5 ARG B 107 GLU B 112 1 N VAL B 108 O HIS B 134 SHEET 3 AA4 5 THR B 85 VAL B 89 1 N VAL B 86 O TYR B 109 SHEET 4 AA4 5 VAL B 149 VAL B 153 1 O VAL B 153 N LEU B 87 SHEET 5 AA4 5 LEU B 178 LEU B 185 1 O LYS B 179 N VAL B 149 SHEET 1 AA5 9 GLN B 251 GLU B 257 0 SHEET 2 AA5 9 SER B 188 ILE B 196 -1 N ALA B 189 O LEU B 256 SHEET 3 AA5 9 ALA B 283 PHE B 296 -1 O GLY B 287 N ILE B 196 SHEET 4 AA5 9 GLN B 320 VAL B 331 -1 O LEU B 323 N PHE B 288 SHEET 5 AA5 9 GLU B 235 GLN B 239 -1 N VAL B 237 O LEU B 322 SHEET 6 AA5 9 LYS B 367 MET B 373 1 O ALA B 372 N ILE B 236 SHEET 7 AA5 9 LEU B 353 VAL B 361 -1 N VAL B 355 O PHE B 371 SHEET 8 AA5 9 ASP B 336 PRO B 345 -1 N GLU B 340 O ARG B 358 SHEET 9 AA5 9 VAL B 271 SER B 278 -1 N VAL B 271 O LEU B 343 SHEET 1 AA6 4 GLN B 251 GLU B 257 0 SHEET 2 AA6 4 SER B 188 ILE B 196 -1 N ALA B 189 O LEU B 256 SHEET 3 AA6 4 ALA B 283 PHE B 296 -1 O GLY B 287 N ILE B 196 SHEET 4 AA6 4 LEU B 305 SER B 308 -1 O LEU B 307 N VAL B 294 LINK MG MG A 403 O HOH A 507 1555 4655 1.93 LINK MG MG A 403 O HOH A 511 1555 4655 2.32 LINK MG MG A 403 O HOH A 536 1555 1555 2.13 LINK MG MG A 403 O HOH A 580 1555 1555 1.89 LINK MG MG A 403 O HOH A 581 1555 4655 2.23 LINK MG MG A 403 O HOH A 736 1555 4655 2.35 CISPEP 1 LEU A 185 PRO A 186 0 -13.94 CISPEP 2 LEU B 185 PRO B 186 0 -11.79 SITE 1 AC1 24 TYR A 48 TYR A 51 MET A 60 ARG A 66 SITE 2 AC1 24 GLY A 90 ALA A 91 GLY A 92 ILE A 95 SITE 3 AC1 24 LEU A 96 GLU A 112 ALA A 113 SER A 114 SITE 4 AC1 24 GLY A 138 PRO A 139 VAL A 140 GLU A 141 SITE 5 AC1 24 GLU A 155 MET A 166 SER A 169 49L A 402 SITE 6 AC1 24 HOH A 594 HOH A 604 HOH A 610 HOH A 611 SITE 1 AC2 13 LEU A 46 TYR A 51 VAL A 56 GLU A 59 SITE 2 AC2 13 GLU A 155 TRP A 156 MET A 157 TYR A 159 SITE 3 AC2 13 HIS A 163 GLU A 164 HIS A 317 SAH A 401 SITE 4 AC2 13 HOH A 639 SITE 1 AC3 6 HOH A 507 HOH A 511 HOH A 536 HOH A 580 SITE 2 AC3 6 HOH A 581 HOH A 736 SITE 1 AC4 5 ALA A 115 TRP A 117 GLN A 118 GLN B 251 SITE 2 AC4 5 ARG B 276 SITE 1 AC5 5 ARG A 121 HOH A 528 ARG B 252 PHE B 253 SITE 2 AC5 5 ALA B 254 SITE 1 AC6 24 TYR B 47 TYR B 51 MET B 60 ARG B 66 SITE 2 AC6 24 GLY B 90 ALA B 91 ILE B 95 LEU B 96 SITE 3 AC6 24 GLU B 112 ALA B 113 SER B 114 GLY B 138 SITE 4 AC6 24 PRO B 139 VAL B 140 GLU B 141 GLU B 155 SITE 5 AC6 24 MET B 166 SER B 169 49L B 402 HOH B 566 SITE 6 AC6 24 HOH B 576 HOH B 578 HOH B 580 HOH B 681 SITE 1 AC7 14 ARG B 43 LEU B 46 TYR B 51 VAL B 56 SITE 2 AC7 14 GLU B 59 GLU B 155 TRP B 156 MET B 157 SITE 3 AC7 14 TYR B 159 GLU B 164 HIS B 317 ASN B 349 SITE 4 AC7 14 SAH B 401 HOH B 675 SITE 1 AC8 10 LEU B 162 SER B 165 PRO B 345 PRO B 350 SITE 2 AC8 10 ARG B 351 ARG B 352 LEU B 353 HOH B 588 SITE 3 AC8 10 HOH B 600 HOH B 754 CRYST1 99.672 99.672 89.252 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010033 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011204 0.00000