PDB Short entry for 4Y4Q HEADER HYDROLASE 10-FEB-15 4Y4Q TITLE CRYSTAL STRUCTURE OF SORTASE B FROM TYPE II PILUS OF STREPTOCOCCUS TITLE 2 PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTASE, SRTB FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE PCS8235; SOURCE 3 ORGANISM_TAXID: 1159083; SOURCE 4 GENE: PCS8235_00725; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET151 KEYWDS PILUS, VIRULENCE FACTOR, SORTASE, TYPE II PILUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.SHAIK,A.DESSEN,A.M.DI GUILMI REVDAT 5 10-JAN-24 4Y4Q 1 REMARK REVDAT 4 06-SEP-17 4Y4Q 1 REMARK ATOM REVDAT 3 23-SEP-15 4Y4Q 1 JRNL REVDAT 2 05-AUG-15 4Y4Q 1 JRNL REVDAT 1 29-JUL-15 4Y4Q 0 JRNL AUTH M.M.SHAIK,C.LOMBARDI,D.MARAGNO TRINDADE,D.FENEL,G.SCHOEHN, JRNL AUTH 2 A.M.DI GUILMI,A.DESSEN JRNL TITL A STRUCTURAL SNAPSHOT OF TYPE II PILUS FORMATION IN JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE. JRNL REF J.BIOL.CHEM. V. 290 22581 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26198632 JRNL DOI 10.1074/JBC.M115.647834 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 27894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3224 - 4.6559 0.99 2901 149 0.1917 0.2498 REMARK 3 2 4.6559 - 3.6963 1.00 2776 167 0.1418 0.1748 REMARK 3 3 3.6963 - 3.2293 1.00 2790 146 0.1666 0.1835 REMARK 3 4 3.2293 - 2.9341 1.00 2787 137 0.1903 0.2378 REMARK 3 5 2.9341 - 2.7239 1.00 2722 142 0.2046 0.2798 REMARK 3 6 2.7239 - 2.5633 0.99 2729 140 0.2107 0.2593 REMARK 3 7 2.5633 - 2.4349 0.96 2624 152 0.2122 0.2832 REMARK 3 8 2.4349 - 2.3289 0.91 2478 129 0.2258 0.2763 REMARK 3 9 2.3289 - 2.2393 0.88 2389 124 0.2452 0.2888 REMARK 3 10 2.2393 - 2.1620 0.83 2288 124 0.2864 0.3577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2869 REMARK 3 ANGLE : 1.127 3886 REMARK 3 CHIRALITY : 0.078 417 REMARK 3 PLANARITY : 0.004 514 REMARK 3 DIHEDRAL : 14.065 1026 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0744 37.2588 27.8045 REMARK 3 T TENSOR REMARK 3 T11: 0.4517 T22: 0.3907 REMARK 3 T33: 0.3511 T12: -0.0882 REMARK 3 T13: 0.0991 T23: -0.0757 REMARK 3 L TENSOR REMARK 3 L11: 1.4193 L22: 3.9290 REMARK 3 L33: 6.0986 L12: -1.6881 REMARK 3 L13: -0.1224 L23: 0.7714 REMARK 3 S TENSOR REMARK 3 S11: -0.1423 S12: -0.5087 S13: 0.2727 REMARK 3 S21: 0.9270 S22: -0.0173 S23: 0.5054 REMARK 3 S31: -0.0652 S32: -0.4330 S33: 0.0421 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5395 31.6503 13.5809 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.2024 REMARK 3 T33: 0.2133 T12: -0.0359 REMARK 3 T13: 0.0304 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 4.5435 L22: 5.4968 REMARK 3 L33: 4.0792 L12: 2.5963 REMARK 3 L13: 0.3575 L23: -0.3430 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: 0.0811 S13: -0.0193 REMARK 3 S21: 0.1891 S22: 0.0498 S23: -0.1076 REMARK 3 S31: 0.0507 S32: -0.0382 S33: -0.0779 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2633 34.4912 12.5037 REMARK 3 T TENSOR REMARK 3 T11: 0.2764 T22: 0.2078 REMARK 3 T33: 0.2602 T12: -0.0632 REMARK 3 T13: -0.0093 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 2.6912 L22: 8.9667 REMARK 3 L33: 5.5297 L12: 0.2427 REMARK 3 L13: -0.2694 L23: -0.2326 REMARK 3 S TENSOR REMARK 3 S11: -0.2376 S12: 0.3936 S13: 0.7783 REMARK 3 S21: -0.2813 S22: 0.1059 S23: 0.8014 REMARK 3 S31: -0.2227 S32: -0.4312 S33: 0.1213 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1180 0.7415 27.4834 REMARK 3 T TENSOR REMARK 3 T11: 0.4856 T22: 0.4022 REMARK 3 T33: 0.2621 T12: -0.0683 REMARK 3 T13: -0.0217 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 0.9853 L22: 3.6051 REMARK 3 L33: 6.0755 L12: -1.4161 REMARK 3 L13: 0.3222 L23: -1.4471 REMARK 3 S TENSOR REMARK 3 S11: -0.1096 S12: -0.3123 S13: -0.3399 REMARK 3 S21: 1.0794 S22: 0.0558 S23: -0.6265 REMARK 3 S31: 0.1189 S32: 0.4923 S33: 0.0580 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6435 6.1261 13.5415 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.2016 REMARK 3 T33: 0.1755 T12: -0.0486 REMARK 3 T13: 0.0400 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 3.3565 L22: 5.0798 REMARK 3 L33: 4.0340 L12: 1.7726 REMARK 3 L13: 0.1849 L23: 0.4159 REMARK 3 S TENSOR REMARK 3 S11: 0.1152 S12: -0.1762 S13: 0.0369 REMARK 3 S21: 0.2680 S22: -0.0242 S23: 0.1322 REMARK 3 S31: 0.0790 S32: -0.0005 S33: -0.0837 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0045 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27931 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 41.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3QPS REMARK 200 REMARK 200 REMARK: STACK OF PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM FORMATE, 0.1 M CITRIC REMARK 280 ACID, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.64500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.64500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.07500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.57000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.07500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.57000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.64500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.07500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.57000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.64500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.07500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.57000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 VAL A 19 REMARK 465 SER A 20 REMARK 465 LEU A 21 REMARK 465 SER A 22 REMARK 465 PRO A 23 REMARK 465 ASN A 24 REMARK 465 PRO A 25 REMARK 465 LEU A 26 REMARK 465 LEU A 27 REMARK 465 GLY A 28 REMARK 465 LEU A 29 REMARK 465 ASP A 30 REMARK 465 SER A 31 REMARK 465 THR A 32 REMARK 465 GLU A 33 REMARK 465 ASN A 34 REMARK 465 LEU A 35 REMARK 465 TYR A 36 REMARK 465 PHE A 37 REMARK 465 GLN A 38 REMARK 465 GLY A 39 REMARK 465 ILE A 40 REMARK 465 ASP A 41 REMARK 465 PRO A 42 REMARK 465 PHE A 43 REMARK 465 THR A 44 REMARK 465 MET A 45 REMARK 465 ASP A 46 REMARK 465 SER A 47 REMARK 465 ASN A 48 REMARK 465 GLN A 49 REMARK 465 VAL A 50 REMARK 465 TYR A 51 REMARK 465 SER A 52 REMARK 465 LEU A 53 REMARK 465 ALA A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 SER A 57 REMARK 465 GLU A 58 REMARK 465 TYR A 59 REMARK 465 GLU A 60 REMARK 465 ALA A 61 REMARK 465 TYR A 62 REMARK 465 ARG A 63 REMARK 465 PRO A 64 REMARK 465 VAL A 65 REMARK 465 THR A 66 REMARK 465 THR A 67 REMARK 465 GLN A 68 REMARK 465 GLN A 69 REMARK 465 ASP A 70 REMARK 465 GLU A 71 REMARK 465 LEU A 72 REMARK 465 ALA A 73 REMARK 465 SER A 74 REMARK 465 PHE A 75 REMARK 465 GLU A 110 REMARK 465 LYS A 111 REMARK 465 TYR A 112 REMARK 465 LEU A 113 REMARK 465 ASN A 114 REMARK 465 LYS A 115 REMARK 465 ASP A 116 REMARK 465 SER A 117 REMARK 465 LYS A 118 REMARK 465 GLY A 119 REMARK 465 VAL A 260 REMARK 465 MET B 18 REMARK 465 VAL B 19 REMARK 465 SER B 20 REMARK 465 LEU B 21 REMARK 465 SER B 22 REMARK 465 PRO B 23 REMARK 465 ASN B 24 REMARK 465 PRO B 25 REMARK 465 LEU B 26 REMARK 465 LEU B 27 REMARK 465 GLY B 28 REMARK 465 LEU B 29 REMARK 465 ASP B 30 REMARK 465 SER B 31 REMARK 465 THR B 32 REMARK 465 GLU B 33 REMARK 465 ASN B 34 REMARK 465 LEU B 35 REMARK 465 TYR B 36 REMARK 465 PHE B 37 REMARK 465 GLN B 38 REMARK 465 GLY B 39 REMARK 465 ILE B 40 REMARK 465 ASP B 41 REMARK 465 PRO B 42 REMARK 465 PHE B 43 REMARK 465 THR B 44 REMARK 465 MET B 45 REMARK 465 ASP B 46 REMARK 465 SER B 47 REMARK 465 ASN B 48 REMARK 465 GLN B 49 REMARK 465 VAL B 50 REMARK 465 TYR B 51 REMARK 465 SER B 52 REMARK 465 LEU B 53 REMARK 465 ALA B 54 REMARK 465 SER B 55 REMARK 465 SER B 56 REMARK 465 SER B 57 REMARK 465 GLU B 58 REMARK 465 TYR B 59 REMARK 465 GLU B 60 REMARK 465 ALA B 61 REMARK 465 TYR B 62 REMARK 465 ARG B 63 REMARK 465 PRO B 64 REMARK 465 VAL B 65 REMARK 465 THR B 66 REMARK 465 THR B 67 REMARK 465 GLN B 68 REMARK 465 GLN B 69 REMARK 465 ASP B 70 REMARK 465 GLU B 71 REMARK 465 LEU B 72 REMARK 465 ALA B 73 REMARK 465 SER B 74 REMARK 465 PHE B 75 REMARK 465 LYS B 111 REMARK 465 TYR B 112 REMARK 465 LEU B 113 REMARK 465 ASN B 114 REMARK 465 LYS B 115 REMARK 465 ASP B 116 REMARK 465 SER B 117 REMARK 465 LYS B 118 REMARK 465 GLY B 119 REMARK 465 VAL B 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 170 O HOH A 301 1.88 REMARK 500 O HIS B 170 O HOH B 301 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ PHE A 78 OG SER B 76 7555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 243 C ASP A 244 N 0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 76 CA - C - N ANGL. DEV. = 14.3 DEGREES REMARK 500 SER A 76 O - C - N ANGL. DEV. = -17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 124 -58.98 69.13 REMARK 500 ASP A 244 -33.34 -19.77 REMARK 500 ASP B 108 111.09 -165.84 REMARK 500 ASN B 109 -130.85 58.36 REMARK 500 GLU B 150 3.58 85.69 REMARK 500 MET B 154 -122.26 60.16 REMARK 500 PHE B 155 10.48 96.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 243 15.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 4Y4Q A 46 260 UNP M7N1R6 M7N1R6_STREE 46 260 DBREF 4Y4Q B 46 260 UNP M7N1R6 M7N1R6_STREE 46 260 SEQADV 4Y4Q MET A 18 UNP M7N1R6 INITIATING METHIONINE SEQADV 4Y4Q VAL A 19 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q SER A 20 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q LEU A 21 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q SER A 22 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q PRO A 23 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q ASN A 24 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q PRO A 25 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q LEU A 26 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q LEU A 27 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q GLY A 28 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q LEU A 29 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q ASP A 30 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q SER A 31 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q THR A 32 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q GLU A 33 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q ASN A 34 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q LEU A 35 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q TYR A 36 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q PHE A 37 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q GLN A 38 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q GLY A 39 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q ILE A 40 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q ASP A 41 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q PRO A 42 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q PHE A 43 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q THR A 44 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q MET A 45 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q MET B 18 UNP M7N1R6 INITIATING METHIONINE SEQADV 4Y4Q VAL B 19 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q SER B 20 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q LEU B 21 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q SER B 22 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q PRO B 23 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q ASN B 24 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q PRO B 25 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q LEU B 26 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q LEU B 27 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q GLY B 28 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q LEU B 29 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q ASP B 30 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q SER B 31 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q THR B 32 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q GLU B 33 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q ASN B 34 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q LEU B 35 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q TYR B 36 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q PHE B 37 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q GLN B 38 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q GLY B 39 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q ILE B 40 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q ASP B 41 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q PRO B 42 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q PHE B 43 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q THR B 44 UNP M7N1R6 EXPRESSION TAG SEQADV 4Y4Q MET B 45 UNP M7N1R6 EXPRESSION TAG SEQRES 1 A 243 MET VAL SER LEU SER PRO ASN PRO LEU LEU GLY LEU ASP SEQRES 2 A 243 SER THR GLU ASN LEU TYR PHE GLN GLY ILE ASP PRO PHE SEQRES 3 A 243 THR MET ASP SER ASN GLN VAL TYR SER LEU ALA SER SER SEQRES 4 A 243 SER GLU TYR GLU ALA TYR ARG PRO VAL THR THR GLN GLN SEQRES 5 A 243 ASP GLU LEU ALA SER PHE SER GLY PHE SER LYS LEU GLN SEQRES 6 A 243 GLU LEU ASN PRO GLU VAL LEU GLY TRP ILE ASN VAL TYR SEQRES 7 A 243 GLY THR ASN ILE ASP TYR PRO LEU VAL GLN ALA LYS ASP SEQRES 8 A 243 ASN GLU LYS TYR LEU ASN LYS ASP SER LYS GLY GLU PHE SEQRES 9 A 243 ALA ALA THR GLY ALA ILE PHE LEU ASP ALA ARG ASN ASN SEQRES 10 A 243 PRO LYS PHE GLU ASP PHE ASN THR ILE ILE TYR GLY HIS SEQRES 11 A 243 HIS VAL GLU ASN GLY VAL MET PHE GLY ASP VAL ALA LYS SEQRES 12 A 243 PHE ALA ASP GLN GLU PHE PHE ASP GLN HIS ARG TYR GLY SEQRES 13 A 243 SER ILE TYR TYR ASN GLY VAL GLU LYS GLY LEU GLU ILE SEQRES 14 A 243 PHE GLU MET LEU GLU VAL ASP ALA TYR ASP PHE ASN ILE SEQRES 15 A 243 TYR ASP PRO GLY ILE GLN GLY GLU ASP ARG GLN GLN ALA SEQRES 16 A 243 TYR LEU ASP HIS LEU LEU SER VAL ALA MET HIS LYS ARG SEQRES 17 A 243 ASP ILE SER LEU SER PRO SER ASP ARG ILE ILE LEU LEU SEQRES 18 A 243 SER THR CYS PHE LEU ASP VAL THR ASN GLY ARG HIS ILE SEQRES 19 A 243 VAL VAL ALA LYS ILE THR ASP THR VAL SEQRES 1 B 243 MET VAL SER LEU SER PRO ASN PRO LEU LEU GLY LEU ASP SEQRES 2 B 243 SER THR GLU ASN LEU TYR PHE GLN GLY ILE ASP PRO PHE SEQRES 3 B 243 THR MET ASP SER ASN GLN VAL TYR SER LEU ALA SER SER SEQRES 4 B 243 SER GLU TYR GLU ALA TYR ARG PRO VAL THR THR GLN GLN SEQRES 5 B 243 ASP GLU LEU ALA SER PHE SER GLY PHE SER LYS LEU GLN SEQRES 6 B 243 GLU LEU ASN PRO GLU VAL LEU GLY TRP ILE ASN VAL TYR SEQRES 7 B 243 GLY THR ASN ILE ASP TYR PRO LEU VAL GLN ALA LYS ASP SEQRES 8 B 243 ASN GLU LYS TYR LEU ASN LYS ASP SER LYS GLY GLU PHE SEQRES 9 B 243 ALA ALA THR GLY ALA ILE PHE LEU ASP ALA ARG ASN ASN SEQRES 10 B 243 PRO LYS PHE GLU ASP PHE ASN THR ILE ILE TYR GLY HIS SEQRES 11 B 243 HIS VAL GLU ASN GLY VAL MET PHE GLY ASP VAL ALA LYS SEQRES 12 B 243 PHE ALA ASP GLN GLU PHE PHE ASP GLN HIS ARG TYR GLY SEQRES 13 B 243 SER ILE TYR TYR ASN GLY VAL GLU LYS GLY LEU GLU ILE SEQRES 14 B 243 PHE GLU MET LEU GLU VAL ASP ALA TYR ASP PHE ASN ILE SEQRES 15 B 243 TYR ASP PRO GLY ILE GLN GLY GLU ASP ARG GLN GLN ALA SEQRES 16 B 243 TYR LEU ASP HIS LEU LEU SER VAL ALA MET HIS LYS ARG SEQRES 17 B 243 ASP ILE SER LEU SER PRO SER ASP ARG ILE ILE LEU LEU SEQRES 18 B 243 SER THR CYS PHE LEU ASP VAL THR ASN GLY ARG HIS ILE SEQRES 19 B 243 VAL VAL ALA LYS ILE THR ASP THR VAL FORMUL 3 HOH *154(H2 O) HELIX 1 AA1 LYS A 80 ASN A 85 1 6 HELIX 2 AA2 PHE A 155 PHE A 161 1 7 HELIX 3 AA3 ASP A 163 HIS A 170 1 8 HELIX 4 AA4 GLY A 206 VAL A 220 1 15 HELIX 5 AA5 PHE B 78 ASN B 85 1 8 HELIX 6 AA6 GLY B 156 PHE B 161 1 6 HELIX 7 AA7 ASP B 163 HIS B 170 1 8 HELIX 8 AA8 GLY B 206 VAL B 220 1 15 SHEET 1 AA110 HIS A 223 LYS A 224 0 SHEET 2 AA110 VAL A 180 ASP A 193 -1 N MET A 189 O HIS A 223 SHEET 3 AA110 GLY A 248 THR A 257 -1 O VAL A 253 N GLU A 188 SHEET 4 AA110 ILE A 235 PHE A 242 -1 N THR A 240 O HIS A 250 SHEET 5 AA110 ASN A 141 GLY A 146 1 N ILE A 144 O LEU A 237 SHEET 6 AA110 ILE A 127 LEU A 129 -1 N PHE A 128 O TYR A 145 SHEET 7 AA110 ASP A 100 GLN A 105 1 N VAL A 104 O ILE A 127 SHEET 8 AA110 GLY A 90 VAL A 94 -1 N ILE A 92 O TYR A 101 SHEET 9 AA110 TYR A 172 TYR A 177 -1 O TYR A 176 N TRP A 91 SHEET 10 AA110 VAL A 180 ASP A 193 -1 O LYS A 182 N ILE A 175 SHEET 1 AA210 HIS B 223 LYS B 224 0 SHEET 2 AA210 VAL B 180 ASP B 193 -1 O MET B 189 N HIS B 223 SHEET 3 AA210 GLY B 248 THR B 257 -1 O VAL B 253 N GLU B 188 SHEET 4 AA210 ILE B 235 PHE B 242 -1 N THR B 240 O HIS B 250 SHEET 5 AA210 ASN B 141 GLY B 146 1 N ILE B 144 O SER B 239 SHEET 6 AA210 ILE B 127 LEU B 129 -1 N PHE B 128 O TYR B 145 SHEET 7 AA210 ASP B 100 GLN B 105 1 N VAL B 104 O LEU B 129 SHEET 8 AA210 GLY B 90 VAL B 94 -1 N ILE B 92 O TYR B 101 SHEET 9 AA210 TYR B 172 TYR B 177 -1 O TYR B 176 N TRP B 91 SHEET 10 AA210 VAL B 180 ASP B 193 -1 O LYS B 182 N ILE B 175 CRYST1 74.150 101.140 143.290 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006979 0.00000