PDB Short entry for 4Y53 HEADER HYDROLASE 11-FEB-15 4Y53 TITLE ENDOTHIAPEPSIN IN COMPLEX WITH FRAGMENT 54 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHIAPEPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE PROTEASE; COMPND 5 EC: 3.4.23.22 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPHONECTRIA PARASITICA; SOURCE 3 ORGANISM_COMMON: CHESNUT BLIGHT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5116 KEYWDS FRAGMENT SCREENING, HYDROLASE, INHIBITION EXPDTA X-RAY DIFFRACTION AUTHOR N.RADEVA,A.HEINE,G.KLEBE REVDAT 2 10-JAN-24 4Y53 1 REMARK REVDAT 1 02-MAR-16 4Y53 0 JRNL AUTH N.RADEVA,A.HEINE,G.KLEBE JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING OF AN ENTIRE LIBRARY JRNL REF TO BE PUBLISHED REF NOW ASSIGNED AS JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.KOESTER,T.CRAAN,S.BRASS,C.HERHAUS,M.ZENTGRAF,L.NEUMANN, REMARK 1 AUTH 2 A.HEINE,G.KLEBE REMARK 1 TITL A SMALL NONRULE OF 3 COMPATIBLE FRAGMENT LIBRARY PROVIDES REMARK 1 TITL 2 HIGH HIT RATE OF ENDOTHIAPEPSIN CRYSTAL STRUCTURES WITH REMARK 1 TITL 3 VARIOUS FRAGMENT CHEMOTYPES. REMARK 1 REF J. MED. CHEM. V. 54 7784 2011 REMARK 1 REFN ISSN 1520-4804 REMARK 1 PMID 21972967 REMARK 1 DOI 10.1021/JM200642W REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1492 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 40356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9510 - 3.8994 0.97 2749 145 0.1778 0.1801 REMARK 3 2 3.8994 - 3.0963 0.99 2765 146 0.1735 0.1825 REMARK 3 3 3.0963 - 2.7053 1.00 2760 145 0.1808 0.1921 REMARK 3 4 2.7053 - 2.4581 1.00 2779 147 0.1787 0.2090 REMARK 3 5 2.4581 - 2.2820 1.00 2752 144 0.1753 0.2092 REMARK 3 6 2.2820 - 2.1475 1.00 2758 145 0.1734 0.1954 REMARK 3 7 2.1475 - 2.0400 1.00 2754 146 0.1752 0.2016 REMARK 3 8 2.0400 - 1.9512 0.99 2727 144 0.1786 0.1962 REMARK 3 9 1.9512 - 1.8761 0.99 2750 146 0.1897 0.2349 REMARK 3 10 1.8761 - 1.8114 0.99 2713 144 0.1946 0.2353 REMARK 3 11 1.8114 - 1.7548 0.99 2754 145 0.2039 0.2486 REMARK 3 12 1.7548 - 1.7046 0.99 2743 145 0.2139 0.2679 REMARK 3 13 1.7046 - 1.6598 1.00 2729 144 0.2282 0.2512 REMARK 3 14 1.6598 - 1.6193 0.94 2599 138 0.2669 0.2882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2498 REMARK 3 ANGLE : 1.081 3428 REMARK 3 CHIRALITY : 0.041 402 REMARK 3 PLANARITY : 0.005 466 REMARK 3 DIHEDRAL : 10.385 829 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:62) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4249 -9.1875 14.6043 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.0870 REMARK 3 T33: 0.0731 T12: 0.0024 REMARK 3 T13: 0.0070 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.9804 L22: 0.8172 REMARK 3 L33: 1.5459 L12: 0.3974 REMARK 3 L13: 0.0319 L23: 0.0851 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: -0.0694 S13: 0.0567 REMARK 3 S21: 0.0851 S22: -0.0176 S23: 0.0641 REMARK 3 S31: -0.0096 S32: -0.1355 S33: 0.0093 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 63:81) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3236 -2.5571 25.2115 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.1354 REMARK 3 T33: 0.0924 T12: -0.0079 REMARK 3 T13: -0.0021 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.7348 L22: 3.1410 REMARK 3 L33: 1.4785 L12: -0.0168 REMARK 3 L13: -0.1254 L23: 0.2090 REMARK 3 S TENSOR REMARK 3 S11: -0.0849 S12: -0.1271 S13: 0.0312 REMARK 3 S21: 0.1486 S22: 0.1615 S23: 0.2566 REMARK 3 S31: -0.1539 S32: -0.2415 S33: -0.0640 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 82:151) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0294 -3.0943 19.0919 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.0717 REMARK 3 T33: 0.0728 T12: 0.0092 REMARK 3 T13: -0.0126 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.3616 L22: 0.9714 REMARK 3 L33: 1.6645 L12: 0.2566 REMARK 3 L13: 0.2393 L23: 0.4049 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: -0.1158 S13: 0.1014 REMARK 3 S21: 0.0310 S22: -0.0006 S23: 0.0019 REMARK 3 S31: -0.0364 S32: -0.0338 S33: 0.0531 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 152:190) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5646 -4.8821 0.0038 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.0886 REMARK 3 T33: 0.1039 T12: 0.0138 REMARK 3 T13: -0.0001 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.8049 L22: 1.4034 REMARK 3 L33: 0.9182 L12: 0.2968 REMARK 3 L13: -0.1981 L23: -0.3765 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.0053 S13: -0.0163 REMARK 3 S21: -0.0847 S22: -0.0387 S23: -0.1505 REMARK 3 S31: 0.0286 S32: 0.0520 S33: 0.0444 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 191:204) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1196 11.0200 -0.2627 REMARK 3 T TENSOR REMARK 3 T11: 0.0927 T22: 0.0491 REMARK 3 T33: 0.1227 T12: -0.0053 REMARK 3 T13: -0.0126 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.1735 L22: 0.5352 REMARK 3 L33: 5.5884 L12: -0.4414 REMARK 3 L13: 1.1688 L23: -1.6966 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0219 S13: 0.0413 REMARK 3 S21: 0.1418 S22: -0.0148 S23: -0.1020 REMARK 3 S31: -0.4720 S32: 0.0265 S33: 0.0267 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 205:242) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1042 11.1965 -7.1721 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.0589 REMARK 3 T33: 0.0741 T12: 0.0077 REMARK 3 T13: 0.0110 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.3664 L22: 1.4533 REMARK 3 L33: 1.4666 L12: -0.1805 REMARK 3 L13: 0.5678 L23: -0.8991 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: 0.0589 S13: 0.0612 REMARK 3 S21: -0.0521 S22: -0.0308 S23: -0.0778 REMARK 3 S31: -0.0404 S32: 0.0538 S33: 0.0268 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 243:258) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3866 8.1169 -7.8390 REMARK 3 T TENSOR REMARK 3 T11: 0.0924 T22: 0.1371 REMARK 3 T33: 0.0977 T12: -0.0286 REMARK 3 T13: 0.0271 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 3.6540 L22: 4.1543 REMARK 3 L33: 2.5126 L12: 1.0516 REMARK 3 L13: 1.8870 L23: -1.8909 REMARK 3 S TENSOR REMARK 3 S11: -0.0598 S12: -0.1740 S13: 0.0980 REMARK 3 S21: 0.3508 S22: 0.0487 S23: 0.2360 REMARK 3 S31: -0.0660 S32: -0.1828 S33: 0.0092 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 259:330) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8915 3.7419 -4.3982 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.0594 REMARK 3 T33: 0.0680 T12: -0.0001 REMARK 3 T13: 0.0004 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.6375 L22: 0.5474 REMARK 3 L33: 0.3425 L12: -0.3910 REMARK 3 L13: 0.3766 L23: -0.1813 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0108 S13: 0.0084 REMARK 3 S21: 0.0154 S22: -0.0149 S23: -0.0798 REMARK 3 S31: -0.0147 S32: 0.0056 S33: 0.0134 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.891200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40417 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 42.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.060 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.69 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3PCW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE, 24-30% PEG 4000, PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.31000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 63 CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 110 CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 243 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1349 O HOH A 1595 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1640 O HOH A 2170 2545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 115.75 -39.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 47B A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 47B A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PGI RELATED DB: PDB REMARK 900 RELATED ID: 3PB5 RELATED DB: PDB REMARK 900 RELATED ID: 4Y35 RELATED DB: PDB REMARK 900 RELATED ID: 4Y36 RELATED DB: PDB REMARK 900 RELATED ID: 4Y37 RELATED DB: PDB REMARK 900 RELATED ID: 4Y39 RELATED DB: PDB REMARK 900 RELATED ID: 4Y3A RELATED DB: PDB REMARK 900 RELATED ID: 4Y3D RELATED DB: PDB REMARK 900 RELATED ID: 4Y3F RELATED DB: PDB REMARK 900 RELATED ID: 4Y3G RELATED DB: PDB REMARK 900 RELATED ID: 4Y3H RELATED DB: PDB REMARK 900 RELATED ID: 4Y3L RELATED DB: PDB REMARK 900 RELATED ID: 4Y3M RELATED DB: PDB REMARK 900 RELATED ID: 4Y3N RELATED DB: PDB REMARK 900 RELATED ID: 4Y3P RELATED DB: PDB REMARK 900 RELATED ID: 4Y3Q RELATED DB: PDB REMARK 900 RELATED ID: 4Y3R RELATED DB: PDB REMARK 900 RELATED ID: 4Y3S RELATED DB: PDB REMARK 900 RELATED ID: 4Y3T RELATED DB: PDB REMARK 900 RELATED ID: 4Y3W RELATED DB: PDB REMARK 900 RELATED ID: 4Y3X RELATED DB: PDB REMARK 900 RELATED ID: 4Y3Z RELATED DB: PDB REMARK 900 RELATED ID: 4Y41 RELATED DB: PDB REMARK 900 RELATED ID: 4Y43 RELATED DB: PDB REMARK 900 RELATED ID: 4Y44 RELATED DB: PDB REMARK 900 RELATED ID: 4Y45 RELATED DB: PDB REMARK 900 RELATED ID: 4Y47 RELATED DB: PDB REMARK 900 RELATED ID: 4Y4A RELATED DB: PDB REMARK 900 RELATED ID: 4Y4B RELATED DB: PDB REMARK 900 RELATED ID: 4Y4C RELATED DB: PDB REMARK 900 RELATED ID: 4Y4E RELATED DB: PDB REMARK 900 RELATED ID: 4Y4T RELATED DB: PDB REMARK 900 RELATED ID: 4Y4U RELATED DB: PDB REMARK 900 RELATED ID: 4Y4W RELATED DB: PDB REMARK 900 RELATED ID: 4Y4X RELATED DB: PDB REMARK 900 RELATED ID: 4Y4Z RELATED DB: PDB REMARK 900 RELATED ID: 4Y50 RELATED DB: PDB REMARK 900 RELATED ID: 4Y51 RELATED DB: PDB REMARK 900 RELATED ID: 4Y53 RELATED DB: PDB REMARK 900 RELATED ID: 4Y54 RELATED DB: PDB REMARK 900 RELATED ID: 4Y56 RELATED DB: PDB REMARK 900 RELATED ID: 4Y57 RELATED DB: PDB REMARK 900 RELATED ID: 4Y58 RELATED DB: PDB REMARK 900 RELATED ID: 4Y5A RELATED DB: PDB REMARK 900 RELATED ID: 4Y5B RELATED DB: PDB REMARK 900 RELATED ID: 4Y5C RELATED DB: PDB REMARK 900 RELATED ID: 4Y5E RELATED DB: PDB REMARK 900 RELATED ID: 4Y5G RELATED DB: PDB REMARK 900 RELATED ID: 4Y5K RELATED DB: PDB REMARK 900 RELATED ID: 4Y5L RELATED DB: PDB REMARK 900 RELATED ID: 4Y5M RELATED DB: PDB REMARK 900 RELATED ID: 4Y5N RELATED DB: PDB REMARK 900 RELATED ID: 4Y5P RELATED DB: PDB REMARK 900 RELATED ID: 4YCK RELATED DB: PDB REMARK 900 RELATED ID: 4YCT RELATED DB: PDB REMARK 900 RELATED ID: 4YCY RELATED DB: PDB REMARK 900 RELATED ID: 4YD3 RELATED DB: PDB REMARK 900 RELATED ID: 4YD4 RELATED DB: PDB REMARK 900 RELATED ID: 4YD5 RELATED DB: PDB REMARK 900 RELATED ID: 4YD6 RELATED DB: PDB REMARK 900 RELATED ID: 4YD7 RELATED DB: PDB REMARK 900 RELATED ID: 4Y48 RELATED DB: PDB REMARK 900 RELATED ID: 4Y4J RELATED DB: PDB REMARK 900 RELATED ID: 4Y4G RELATED DB: PDB REMARK 900 RELATED ID: 4Y4D RELATED DB: PDB REMARK 900 RELATED ID: 4Y38 RELATED DB: PDB REMARK 900 RELATED ID: 4Y3Y RELATED DB: PDB REMARK 900 RELATED ID: 4Y3J RELATED DB: PDB DBREF 4Y53 A 1 330 UNP P11838 CARP_CRYPA 90 419 SEQRES 1 A 330 SER THR GLY SER ALA THR THR THR PRO ILE ASP SER LEU SEQRES 2 A 330 ASP ASP ALA TYR ILE THR PRO VAL GLN ILE GLY THR PRO SEQRES 3 A 330 ALA GLN THR LEU ASN LEU ASP PHE ASP THR GLY SER SER SEQRES 4 A 330 ASP LEU TRP VAL PHE SER SER GLU THR THR ALA SER GLU SEQRES 5 A 330 VAL ASP GLY GLN THR ILE TYR THR PRO SER LYS SER THR SEQRES 6 A 330 THR ALA LYS LEU LEU SER GLY ALA THR TRP SER ILE SER SEQRES 7 A 330 TYR GLY ASP GLY SER SER SER SER GLY ASP VAL TYR THR SEQRES 8 A 330 ASP THR VAL SER VAL GLY GLY LEU THR VAL THR GLY GLN SEQRES 9 A 330 ALA VAL GLU SER ALA LYS LYS VAL SER SER SER PHE THR SEQRES 10 A 330 GLU ASP SER THR ILE ASP GLY LEU LEU GLY LEU ALA PHE SEQRES 11 A 330 SER THR LEU ASN THR VAL SER PRO THR GLN GLN LYS THR SEQRES 12 A 330 PHE PHE ASP ASN ALA LYS ALA SER LEU ASP SER PRO VAL SEQRES 13 A 330 PHE THR ALA ASP LEU GLY TYR HIS ALA PRO GLY THR TYR SEQRES 14 A 330 ASN PHE GLY PHE ILE ASP THR THR ALA TYR THR GLY SER SEQRES 15 A 330 ILE THR TYR THR ALA VAL SER THR LYS GLN GLY PHE TRP SEQRES 16 A 330 GLU TRP THR SER THR GLY TYR ALA VAL GLY SER GLY THR SEQRES 17 A 330 PHE LYS SER THR SER ILE ASP GLY ILE ALA ASP THR GLY SEQRES 18 A 330 THR THR LEU LEU TYR LEU PRO ALA THR VAL VAL SER ALA SEQRES 19 A 330 TYR TRP ALA GLN VAL SER GLY ALA LYS SER SER SER SER SEQRES 20 A 330 VAL GLY GLY TYR VAL PHE PRO CYS SER ALA THR LEU PRO SEQRES 21 A 330 SER PHE THR PHE GLY VAL GLY SER ALA ARG ILE VAL ILE SEQRES 22 A 330 PRO GLY ASP TYR ILE ASP PHE GLY PRO ILE SER THR GLY SEQRES 23 A 330 SER SER SER CYS PHE GLY GLY ILE GLN SER SER ALA GLY SEQRES 24 A 330 ILE GLY ILE ASN ILE PHE GLY ASP VAL ALA LEU LYS ALA SEQRES 25 A 330 ALA PHE VAL VAL PHE ASN GLY ALA THR THR PRO THR LEU SEQRES 26 A 330 GLY PHE ALA SER LYS HET GOL A 401 6 HET 47B A 402 17 HET 47B A 403 17 HET EDO A 404 4 HETNAM GOL GLYCEROL HETNAM 47B 3-(3,4-DIFLUOROPHENYL)IMIDAZO[2,1-C][1,2,4]TRIAZINE HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 47B 2(C11 H6 F2 N4) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *293(H2 O) HELIX 1 AA1 THR A 49 VAL A 53 5 5 HELIX 2 AA2 THR A 60 SER A 64 5 5 HELIX 3 AA3 SER A 113 GLU A 118 1 6 HELIX 4 AA4 PHE A 130 ASN A 134 5 5 HELIX 5 AA5 THR A 143 ALA A 150 1 8 HELIX 6 AA6 PRO A 228 ALA A 237 1 10 HELIX 7 AA7 PRO A 274 TYR A 277 5 4 HELIX 8 AA8 GLY A 306 LYS A 311 1 6 SHEET 1 AA1 9 LYS A 68 SER A 78 0 SHEET 2 AA1 9 SER A 84 VAL A 96 -1 O VAL A 89 N LEU A 70 SHEET 3 AA1 9 TYR A 17 ILE A 23 -1 N GLN A 22 O SER A 95 SHEET 4 AA1 9 GLY A 3 PRO A 9 -1 N THR A 8 O ILE A 18 SHEET 5 AA1 9 GLY A 167 PHE A 171 -1 O GLY A 167 N THR A 7 SHEET 6 AA1 9 VAL A 156 ASP A 160 -1 N THR A 158 O ASN A 170 SHEET 7 AA1 9 PHE A 314 ASN A 318 -1 O PHE A 317 N PHE A 157 SHEET 8 AA1 9 THR A 324 ALA A 328 -1 O ALA A 328 N PHE A 314 SHEET 9 AA1 9 THR A 184 ALA A 187 -1 N THR A 186 O LEU A 325 SHEET 1 AA213 LYS A 68 SER A 78 0 SHEET 2 AA213 SER A 84 VAL A 96 -1 O VAL A 89 N LEU A 70 SHEET 3 AA213 LEU A 99 VAL A 112 -1 O VAL A 106 N TYR A 90 SHEET 4 AA213 LEU A 41 VAL A 43 1 N LEU A 41 O GLU A 107 SHEET 5 AA213 GLY A 124 GLY A 127 -1 O LEU A 125 N TRP A 42 SHEET 6 AA213 GLN A 28 ASP A 35 1 N ASP A 33 O GLY A 124 SHEET 7 AA213 TYR A 17 ILE A 23 -1 N VAL A 21 O LEU A 30 SHEET 8 AA213 GLY A 3 PRO A 9 -1 N THR A 8 O ILE A 18 SHEET 9 AA213 GLY A 167 PHE A 171 -1 O GLY A 167 N THR A 7 SHEET 10 AA213 VAL A 156 ASP A 160 -1 N THR A 158 O ASN A 170 SHEET 11 AA213 PHE A 314 ASN A 318 -1 O PHE A 317 N PHE A 157 SHEET 12 AA213 THR A 324 ALA A 328 -1 O ALA A 328 N PHE A 314 SHEET 13 AA213 THR A 184 ALA A 187 -1 N THR A 186 O LEU A 325 SHEET 1 AA3 7 ALA A 269 ILE A 273 0 SHEET 2 AA3 7 PHE A 262 VAL A 266 -1 N PHE A 262 O ILE A 273 SHEET 3 AA3 7 GLU A 196 VAL A 204 -1 N ALA A 203 O THR A 263 SHEET 4 AA3 7 LYS A 210 ALA A 218 -1 O LYS A 210 N TYR A 202 SHEET 5 AA3 7 ILE A 304 PHE A 305 1 O PHE A 305 N ILE A 217 SHEET 6 AA3 7 LEU A 225 LEU A 227 -1 N TYR A 226 O ILE A 304 SHEET 7 AA3 7 ILE A 294 SER A 296 1 O GLN A 295 N LEU A 225 SHEET 1 AA4 4 LYS A 243 SER A 245 0 SHEET 2 AA4 4 GLY A 250 PRO A 254 -1 O GLY A 250 N SER A 245 SHEET 3 AA4 4 SER A 289 GLY A 292 -1 O CYS A 290 N PHE A 253 SHEET 4 AA4 4 ASP A 279 PRO A 282 -1 N GLY A 281 O PHE A 291 SSBOND 1 CYS A 255 CYS A 290 1555 1555 2.03 CISPEP 1 THR A 25 PRO A 26 0 -8.84 CISPEP 2 SER A 137 PRO A 138 0 4.15 SITE 1 AC1 8 VAL A 272 PRO A 274 TYR A 277 ALA A 312 SITE 2 AC1 8 SER A 329 LYS A 330 HOH A1340 HOH A1581 SITE 1 AC2 8 ASP A 15 ASP A 119 ILE A 122 THR A 223 SITE 2 AC2 8 LEU A 224 TYR A 226 PHE A 291 HOH A 753 SITE 1 AC3 8 GLY A 80 PHE A 194 ASP A 219 THR A 222 SITE 2 AC3 8 TYR A 226 ILE A 304 HOH A 529 HOH A 531 SITE 1 AC4 3 TRP A 197 THR A 198 ASP A 215 CRYST1 45.211 72.620 52.661 90.00 109.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022119 0.000000 0.007949 0.00000 SCALE2 0.000000 0.013770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020178 0.00000