PDB Short entry for 4Y72 HEADER TRANSFERASE 13-FEB-15 4Y72 TITLE HUMAN CDK1/CYCLINB1/CKS2 WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CDK1,CELL DIVISION CONTROL PROTEIN 2 HOMOLOG,CELL DIVISION COMPND 5 PROTEIN KINASE 1,P34 PROTEIN KINASE; COMPND 6 EC: 2.7.11.22,2.7.11.23; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: G2/MITOTIC-SPECIFIC CYCLIN-B1; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 2; COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: RESIDUES 165-433; COMPND 16 SYNONYM: CKS-2; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK1, CDC2, CDC28A, CDKN1, P34CDC2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: CCNB1, CCNB; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RIL; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET-28 A+; SOURCE 20 MOL_ID: 3; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 GENE: CKS2; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 28 EXPRESSION_SYSTEM_PLASMID: GST-3C KEYWDS CDK1, CYCLINB1, CKS2, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.R.BROWN,S.KOROLCHUK,M.P.MARTIN,W.STANLEY,R.MOUKHAMETZIANOV, AUTHOR 2 M.E.M.NOBLE,J.A.ENDICOTT REVDAT 2 10-JAN-24 4Y72 1 REMARK REVDAT 1 12-AUG-15 4Y72 0 JRNL AUTH N.R.BROWN,S.KOROLCHUK,M.P.MARTIN,W.A.STANLEY, JRNL AUTH 2 R.MOUKHAMETZIANOV,M.E.NOBLE,J.A.ENDICOTT JRNL TITL CDK1 STRUCTURES REVEAL CONSERVED AND UNIQUE FEATURES OF THE JRNL TITL 2 ESSENTIAL CELL CYCLE CDK. JRNL REF NAT COMMUN V. 6 6769 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25864384 JRNL DOI 10.1038/NCOMMS7769 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2319 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5139 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : 1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.323 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5310 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5155 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7185 ; 1.568 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11874 ; 3.568 ; 2.997 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 631 ; 6.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;37.587 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 974 ;16.044 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.486 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 787 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5869 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1218 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2529 ; 1.279 ; 2.546 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2526 ; 1.279 ; 2.544 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3158 ; 2.273 ; 3.809 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1720 -74.3820 194.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.2636 REMARK 3 T33: 0.3987 T12: -0.0032 REMARK 3 T13: -0.0524 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 4.4491 L22: 2.2071 REMARK 3 L33: 3.3268 L12: -2.4180 REMARK 3 L13: -1.4824 L23: 1.1456 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: -0.5612 S13: 0.3285 REMARK 3 S21: 0.2620 S22: 0.3534 S23: -0.4389 REMARK 3 S31: 0.1840 S32: 0.5967 S33: -0.3234 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0300 -59.6940 175.9330 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.1718 REMARK 3 T33: 0.2655 T12: -0.0629 REMARK 3 T13: -0.0461 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 1.4840 L22: 4.1760 REMARK 3 L33: 1.2037 L12: -0.4884 REMARK 3 L13: -0.1328 L23: -0.9077 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: 0.1493 S13: 0.1819 REMARK 3 S21: -0.5561 S22: 0.1367 S23: 0.0201 REMARK 3 S31: 0.0486 S32: -0.0071 S33: -0.0852 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 999 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0460 -70.5140 210.1190 REMARK 3 T TENSOR REMARK 3 T11: 0.0068 T22: 0.0392 REMARK 3 T33: 0.2375 T12: -0.0137 REMARK 3 T13: 0.0071 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.9047 L22: 1.3557 REMARK 3 L33: 1.1942 L12: -0.4809 REMARK 3 L13: -0.1715 L23: 0.1917 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: 0.0069 S13: 0.0042 REMARK 3 S21: 0.0447 S22: 0.0111 S23: 0.0588 REMARK 3 S31: -0.0006 S32: 0.0135 S33: 0.0271 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 999 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1990 -32.8580 178.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.2513 REMARK 3 T33: 0.3393 T12: -0.0920 REMARK 3 T13: 0.0966 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 4.7781 L22: 6.4111 REMARK 3 L33: 6.1775 L12: 1.2282 REMARK 3 L13: -0.0046 L23: 1.7949 REMARK 3 S TENSOR REMARK 3 S11: -0.1929 S12: 0.1781 S13: 0.1080 REMARK 3 S21: -0.4350 S22: 0.4564 S23: -0.4404 REMARK 3 S31: -0.5094 S32: 0.7461 S33: -0.2634 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4Y72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34085 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 53.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.77800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HCK, 2B9R, 1JST REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CONDITIONS AROUND 0.1M MES/IMIDAZOLE REMARK 280 BUFFER (PH6.7), 6.5% MPD, 5% PEG4K, 10% PEG1K PROTEIN AT 10-12 REMARK 280 MG/ML, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.58300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.38550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.32300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.38550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.58300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.32300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A 290 REMARK 465 ASP A 291 REMARK 465 ASN A 292 REMARK 465 GLN A 293 REMARK 465 ILE A 294 REMARK 465 LYS A 295 REMARK 465 LYS A 296 REMARK 465 MET A 297 REMARK 465 GLY B 160 REMARK 465 SER B 161 REMARK 465 HIS B 162 REMARK 465 MET B 163 REMARK 465 ASN B 164 REMARK 465 LEU B 165 REMARK 465 ALA B 430 REMARK 465 LYS B 431 REMARK 465 VAL B 432 REMARK 465 GLY C -4 REMARK 465 PRO C -3 REMARK 465 LEU C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 LYS C 75 REMARK 465 ASP C 76 REMARK 465 GLN C 77 REMARK 465 GLN C 78 REMARK 465 LYS C 79 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 307 O TYR B 367 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 72 -139.03 -97.79 REMARK 500 ARG A 127 -21.52 83.39 REMARK 500 ASP A 146 80.16 62.00 REMARK 500 SER A 182 -153.40 -152.88 REMARK 500 LYS A 200 -1.11 76.51 REMARK 500 HIS A 205 68.42 -100.27 REMARK 500 TYR A 286 -33.25 -36.29 REMARK 500 ALA B 428 47.90 -79.01 REMARK 500 SER C 9 170.86 -59.93 REMARK 500 ASP C 14 -155.76 -117.44 REMARK 500 SER C 51 176.11 -59.08 REMARK 500 HIS C 56 98.42 -69.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 692 DISTANCE = 6.77 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LZ9 A 301 DBREF 4Y72 A 1 297 UNP P06493 CDK1_HUMAN 1 297 DBREF 4Y72 B 164 432 UNP P14635 CCNB1_HUMAN 165 433 DBREF 4Y72 C 1 79 UNP P33552 CKS2_HUMAN 1 79 SEQADV 4Y72 GLY A -4 UNP P06493 EXPRESSION TAG SEQADV 4Y72 PRO A -3 UNP P06493 EXPRESSION TAG SEQADV 4Y72 LEU A -2 UNP P06493 EXPRESSION TAG SEQADV 4Y72 GLY A -1 UNP P06493 EXPRESSION TAG SEQADV 4Y72 SER A 0 UNP P06493 EXPRESSION TAG SEQADV 4Y72 GLY B 160 UNP P14635 EXPRESSION TAG SEQADV 4Y72 SER B 161 UNP P14635 EXPRESSION TAG SEQADV 4Y72 HIS B 162 UNP P14635 EXPRESSION TAG SEQADV 4Y72 MET B 163 UNP P14635 EXPRESSION TAG SEQADV 4Y72 SER B 166 UNP P14635 CYS 167 CONFLICT SEQADV 4Y72 SER B 237 UNP P14635 CYS 238 CONFLICT SEQADV 4Y72 SER B 349 UNP P14635 CYS 350 CONFLICT SEQADV 4Y72 GLY C -4 UNP P33552 EXPRESSION TAG SEQADV 4Y72 PRO C -3 UNP P33552 EXPRESSION TAG SEQADV 4Y72 LEU C -2 UNP P33552 EXPRESSION TAG SEQADV 4Y72 GLY C -1 UNP P33552 EXPRESSION TAG SEQADV 4Y72 SER C 0 UNP P33552 EXPRESSION TAG SEQRES 1 A 302 GLY PRO LEU GLY SER MET GLU ASP TYR THR LYS ILE GLU SEQRES 2 A 302 LYS ILE GLY GLU GLY THR TYR GLY VAL VAL TYR LYS GLY SEQRES 3 A 302 ARG HIS LYS THR THR GLY GLN VAL VAL ALA MET LYS LYS SEQRES 4 A 302 ILE ARG LEU GLU SER GLU GLU GLU GLY VAL PRO SER THR SEQRES 5 A 302 ALA ILE ARG GLU ILE SER LEU LEU LYS GLU LEU ARG HIS SEQRES 6 A 302 PRO ASN ILE VAL SER LEU GLN ASP VAL LEU MET GLN ASP SEQRES 7 A 302 SER ARG LEU TYR LEU ILE PHE GLU PHE LEU SER MET ASP SEQRES 8 A 302 LEU LYS LYS TYR LEU ASP SER ILE PRO PRO GLY GLN TYR SEQRES 9 A 302 MET ASP SER SER LEU VAL LYS SER TYR LEU TYR GLN ILE SEQRES 10 A 302 LEU GLN GLY ILE VAL PHE CYS HIS SER ARG ARG VAL LEU SEQRES 11 A 302 HIS ARG ASP LEU LYS PRO GLN ASN LEU LEU ILE ASP ASP SEQRES 12 A 302 LYS GLY THR ILE LYS LEU ALA ASP PHE GLY LEU ALA ARG SEQRES 13 A 302 ALA PHE GLY ILE PRO ILE ARG VAL TYR THR HIS GLU VAL SEQRES 14 A 302 VAL THR LEU TRP TYR ARG SER PRO GLU VAL LEU LEU GLY SEQRES 15 A 302 SER ALA ARG TYR SER THR PRO VAL ASP ILE TRP SER ILE SEQRES 16 A 302 GLY THR ILE PHE ALA GLU LEU ALA THR LYS LYS PRO LEU SEQRES 17 A 302 PHE HIS GLY ASP SER GLU ILE ASP GLN LEU PHE ARG ILE SEQRES 18 A 302 PHE ARG ALA LEU GLY THR PRO ASN ASN GLU VAL TRP PRO SEQRES 19 A 302 GLU VAL GLU SER LEU GLN ASP TYR LYS ASN THR PHE PRO SEQRES 20 A 302 LYS TRP LYS PRO GLY SER LEU ALA SER HIS VAL LYS ASN SEQRES 21 A 302 LEU ASP GLU ASN GLY LEU ASP LEU LEU SER LYS MET LEU SEQRES 22 A 302 ILE TYR ASP PRO ALA LYS ARG ILE SER GLY LYS MET ALA SEQRES 23 A 302 LEU ASN HIS PRO TYR PHE ASN ASP LEU ASP ASN GLN ILE SEQRES 24 A 302 LYS LYS MET SEQRES 1 B 273 GLY SER HIS MET ASN LEU SER SER GLU TYR VAL LYS ASP SEQRES 2 B 273 ILE TYR ALA TYR LEU ARG GLN LEU GLU GLU GLU GLN ALA SEQRES 3 B 273 VAL ARG PRO LYS TYR LEU LEU GLY ARG GLU VAL THR GLY SEQRES 4 B 273 ASN MET ARG ALA ILE LEU ILE ASP TRP LEU VAL GLN VAL SEQRES 5 B 273 GLN MET LYS PHE ARG LEU LEU GLN GLU THR MET TYR MET SEQRES 6 B 273 THR VAL SER ILE ILE ASP ARG PHE MET GLN ASN ASN SER SEQRES 7 B 273 VAL PRO LYS LYS MET LEU GLN LEU VAL GLY VAL THR ALA SEQRES 8 B 273 MET PHE ILE ALA SER LYS TYR GLU GLU MET TYR PRO PRO SEQRES 9 B 273 GLU ILE GLY ASP PHE ALA PHE VAL THR ASP ASN THR TYR SEQRES 10 B 273 THR LYS HIS GLN ILE ARG GLN MET GLU MET LYS ILE LEU SEQRES 11 B 273 ARG ALA LEU ASN PHE GLY LEU GLY ARG PRO LEU PRO LEU SEQRES 12 B 273 HIS PHE LEU ARG ARG ALA SER LYS ILE GLY GLU VAL ASP SEQRES 13 B 273 VAL GLU GLN HIS THR LEU ALA LYS TYR LEU MET GLU LEU SEQRES 14 B 273 THR MET LEU ASP TYR ASP MET VAL HIS PHE PRO PRO SER SEQRES 15 B 273 GLN ILE ALA ALA GLY ALA PHE SER LEU ALA LEU LYS ILE SEQRES 16 B 273 LEU ASP ASN GLY GLU TRP THR PRO THR LEU GLN HIS TYR SEQRES 17 B 273 LEU SER TYR THR GLU GLU SER LEU LEU PRO VAL MET GLN SEQRES 18 B 273 HIS LEU ALA LYS ASN VAL VAL MET VAL ASN GLN GLY LEU SEQRES 19 B 273 THR LYS HIS MET THR VAL LYS ASN LYS TYR ALA THR SER SEQRES 20 B 273 LYS HIS ALA LYS ILE SER THR LEU PRO GLN LEU ASN SER SEQRES 21 B 273 ALA LEU VAL GLN ASP LEU ALA LYS ALA VAL ALA LYS VAL SEQRES 1 C 84 GLY PRO LEU GLY SER MET ALA HIS LYS GLN ILE TYR TYR SEQRES 2 C 84 SER ASP LYS TYR PHE ASP GLU HIS TYR GLU TYR ARG HIS SEQRES 3 C 84 VAL MET LEU PRO ARG GLU LEU SER LYS GLN VAL PRO LYS SEQRES 4 C 84 THR HIS LEU MET SER GLU GLU GLU TRP ARG ARG LEU GLY SEQRES 5 C 84 VAL GLN GLN SER LEU GLY TRP VAL HIS TYR MET ILE HIS SEQRES 6 C 84 GLU PRO GLU PRO HIS ILE LEU LEU PHE ARG ARG PRO LEU SEQRES 7 C 84 PRO LYS ASP GLN GLN LYS HET LZ9 A 301 26 HETNAM LZ9 {[(2,6-DIFLUOROPHENYL)CARBONYL]AMINO}-N-(4- HETNAM 2 LZ9 FLUOROPHENYL)-1H-PYRAZOLE-3-CARBOXAMIDE FORMUL 4 LZ9 C17 H11 F3 N4 O2 FORMUL 5 HOH *368(H2 O) HELIX 1 AA1 SER A 0 GLU A 2 5 3 HELIX 2 AA2 PRO A 45 LYS A 56 1 12 HELIX 3 AA3 LEU A 87 ILE A 94 1 8 HELIX 4 AA4 ASP A 101 SER A 121 1 21 HELIX 5 AA5 LYS A 130 GLN A 132 5 3 HELIX 6 AA6 SER A 171 LEU A 176 1 6 HELIX 7 AA7 THR A 183 LYS A 200 1 18 HELIX 8 AA8 SER A 208 GLY A 221 1 14 HELIX 9 AA9 GLU A 230 LEU A 234 5 5 HELIX 10 AB1 LEU A 249 VAL A 253 5 5 HELIX 11 AB2 ASP A 257 LEU A 268 1 12 HELIX 12 AB3 SER A 277 ASN A 283 1 7 HELIX 13 AB4 HIS A 284 ASN A 288 5 5 HELIX 14 AB5 TYR B 169 GLN B 184 1 16 HELIX 15 AB6 THR B 197 PHE B 215 1 19 HELIX 16 AB7 LEU B 218 ASN B 235 1 18 HELIX 17 AB8 PRO B 239 LYS B 241 5 3 HELIX 18 AB9 MET B 242 GLU B 259 1 18 HELIX 19 AC1 GLU B 264 THR B 272 1 9 HELIX 20 AC2 THR B 277 LEU B 292 1 16 HELIX 21 AC3 LEU B 300 GLY B 312 1 13 HELIX 22 AC4 ASP B 315 MET B 330 1 16 HELIX 23 AC5 LEU B 331 VAL B 336 5 6 HELIX 24 AC6 PRO B 339 LEU B 355 1 17 HELIX 25 AC7 THR B 361 SER B 369 1 9 HELIX 26 AC8 THR B 371 GLN B 391 1 21 HELIX 27 AC9 MET B 397 TYR B 403 1 7 HELIX 28 AD1 ALA B 404 ALA B 409 5 6 HELIX 29 AD2 LYS B 410 ASN B 418 5 9 HELIX 30 AD3 SER B 419 ALA B 428 1 10 HELIX 31 AD4 PRO C 25 LYS C 30 1 6 HELIX 32 AD5 SER C 39 GLY C 47 1 9 SHEET 1 AA1 5 TYR A 4 GLU A 12 0 SHEET 2 AA1 5 GLY A 16 HIS A 23 -1 O VAL A 18 N ILE A 10 SHEET 3 AA1 5 VAL A 29 ARG A 36 -1 O VAL A 30 N GLY A 21 SHEET 4 AA1 5 ARG A 75 GLU A 81 -1 O LEU A 78 N LYS A 33 SHEET 5 AA1 5 LEU A 66 MET A 71 -1 N LEU A 70 O TYR A 77 SHEET 1 AA2 3 MET A 85 ASP A 86 0 SHEET 2 AA2 3 LEU A 134 ILE A 136 -1 O ILE A 136 N MET A 85 SHEET 3 AA2 3 ILE A 142 LEU A 144 -1 O LYS A 143 N LEU A 135 SHEET 1 AA3 3 VAL A 124 LEU A 125 0 SHEET 2 AA3 3 ARG A 151 ALA A 152 -1 O ARG A 151 N LEU A 125 SHEET 3 AA3 3 ILE A 155 PRO A 156 -1 O ILE A 155 N ALA A 152 SHEET 1 AA4 3 TYR C 7 TYR C 8 0 SHEET 2 AA4 3 TYR C 17 MET C 23 -1 O MET C 23 N TYR C 7 SHEET 3 AA4 3 TYR C 12 PHE C 13 -1 N TYR C 12 O TYR C 19 SHEET 1 AA5 4 TYR C 7 TYR C 8 0 SHEET 2 AA5 4 TYR C 17 MET C 23 -1 O MET C 23 N TYR C 7 SHEET 3 AA5 4 ILE C 66 PRO C 72 -1 O LEU C 67 N VAL C 22 SHEET 4 AA5 4 VAL C 55 MET C 58 -1 N VAL C 55 O ARG C 70 CISPEP 1 PRO A 246 GLY A 247 0 -21.31 CISPEP 2 GLY A 247 SER A 248 0 -22.82 SITE 1 AC1 14 ILE A 10 TYR A 15 ALA A 31 LYS A 33 SITE 2 AC1 14 GLU A 81 PHE A 82 LEU A 83 SER A 84 SITE 3 AC1 14 ASP A 86 LYS A 89 LEU A 135 ASP A 146 SITE 4 AC1 14 HOH A 445 HOH A 481 CRYST1 65.166 68.646 166.771 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005996 0.00000