PDB Short entry for 4YDY HEADER CYTOKINE/DE NOVO PROTEIN 23-FEB-15 4YDY TITLE CRYSTAL STRUCTURE OF DARPIN 44C12V5 IN COMPLEX WITH HUMAN IL-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DARPIN 44C12V5; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: INTERLEUKIN-4; COMPND 7 CHAIN: I, J; COMPND 8 FRAGMENT: UNP RESIDUES 25-153; COMPND 9 SYNONYM: IL-4,B-CELL STIMULATORY FACTOR 1,BSF-1,BINETRAKIN,LYMPHOCYTE COMPND 10 STIMULATORY FACTOR 1,PITRAKINRA; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: IL4; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALTERNATIVE SCAFFOLD, CYTOKINE-DE NOVO PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,G.GILLILAND REVDAT 3 27-SEP-23 4YDY 1 REMARK REVDAT 2 20-JUL-16 4YDY 1 REMARK REVDAT 1 04-MAR-15 4YDY 0 JRNL AUTH A.TEPLYAKOV,G.OBMOLOVA,G.GILLILAND JRNL TITL CRYSTAL STRUCTURE OF DARPIN 44C12V5 IN COMPLEX WITH HUMAN JRNL TITL 2 IL-4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 45618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3374 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.23000 REMARK 3 B22 (A**2) : 1.68000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.403 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4321 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5856 ; 0.982 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 556 ; 4.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;32.616 ;25.181 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;13.971 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3208 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2782 ; 2.832 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4413 ; 4.658 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1539 ;35.157 ;88.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1443 ;36.644 ;88.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46738 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2B8U (IL-4), 2J8S (DARPIN) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.2 M LITHIUM SULFATE, REMARK 280 0.1 M SODIUM ACETATE, PH 4.5 0.1 M SODIUM ACETATE, PH 4.5, 18% REMARK 280 GLYCEROL, PH 4.50, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.62500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.53000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.53000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.62500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 ASN A 169 REMARK 465 MET I 0 REMARK 465 GLY I 67 REMARK 465 ALA I 68 REMARK 465 THR I 69 REMARK 465 ALA I 70 REMARK 465 GLN I 71 REMARK 465 GLN I 72 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 GLY B 11 REMARK 465 ASN B 169 REMARK 465 MET J 0 REMARK 465 HIS J 1 REMARK 465 LYS J 2 REMARK 465 CYS J 127 REMARK 465 SER J 128 REMARK 465 SER J 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 12 OG REMARK 470 ASP A 13 CG OD1 OD2 REMARK 470 HIS I 1 CG ND1 CD2 CE1 NE2 REMARK 470 LYS I 2 CG CD CE NZ REMARK 470 LYS I 21 CG CD CE NZ REMARK 470 THR I 22 OG1 CG2 REMARK 470 LEU I 23 CG CD1 CD2 REMARK 470 GLU I 26 CG CD OE1 OE2 REMARK 470 LYS I 37 CG CD CE NZ REMARK 470 ASN I 38 CG OD1 ND2 REMARK 470 LYS I 61 CG CD CE NZ REMARK 470 THR I 63 OG1 CG2 REMARK 470 ARG I 64 CG CD NE CZ NH1 NH2 REMARK 470 LEU I 66 CG CD1 CD2 REMARK 470 PHE I 73 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG I 75 CG CD NE CZ NH1 NH2 REMARK 470 SER I 129 OG REMARK 470 SER B 12 OG REMARK 470 CYS J 3 SG REMARK 470 LYS J 21 CG CD CE NZ REMARK 470 LEU J 23 CG CD1 CD2 REMARK 470 GLU J 26 CG CD OE1 OE2 REMARK 470 SER J 36 OG REMARK 470 LYS J 37 CG CD CE NZ REMARK 470 THR J 69 OG1 CG2 REMARK 470 GLN J 71 CG CD OE1 NE2 REMARK 470 GLN J 72 CG CD OE1 NE2 REMARK 470 ARG J 75 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS I 37 -90.40 -82.34 REMARK 500 GLU I 103 126.33 -36.48 REMARK 500 ASN J 38 55.12 -146.20 REMARK 500 ALA J 68 15.14 -158.37 REMARK 500 ALA J 70 -55.02 144.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH I 270 DISTANCE = 5.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YDW RELATED DB: PDB DBREF 4YDY A 1 169 PDB 4YDY 4YDY 1 169 DBREF 4YDY I 1 129 UNP P05112 IL4_HUMAN 25 153 DBREF 4YDY B 1 169 PDB 4YDY 4YDY 1 169 DBREF 4YDY J 1 129 UNP P05112 IL4_HUMAN 25 153 SEQADV 4YDY MET I 0 UNP P05112 INITIATING METHIONINE SEQADV 4YDY MET J 0 UNP P05112 INITIATING METHIONINE SEQRES 1 A 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 A 169 LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 3 A 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 A 169 VAL ASN ALA LEU ASP ASP SER GLY TYR THR PRO LEU HIS SEQRES 5 A 169 LEU ALA ALA GLU ASP GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 6 A 169 LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA ALA ASP ARG SEQRES 7 A 169 LEU GLY ASP THR PRO LEU HIS LEU ALA ALA PHE VAL GLY SEQRES 8 A 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS ALA GLY ALA SEQRES 9 A 169 ASP VAL ASN ALA VAL ASP LEU ALA GLY VAL THR PRO LEU SEQRES 10 A 169 HIS VAL ALA ALA PHE TYR GLY HIS LEU GLU ILE VAL GLU SEQRES 11 A 169 VAL LEU LEU LYS ALA GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 12 A 169 LYS PHE GLY LYS THR PRO ALA ASP ILE ALA ALA ASP ASN SEQRES 13 A 169 GLY HIS GLU ASP ILE ALA GLU VAL LEU GLN LYS LEU ASN SEQRES 1 I 130 MET HIS LYS CYS ASP ILE THR LEU GLN GLU ILE ILE LYS SEQRES 2 I 130 THR LEU ASN SER LEU THR GLU GLN LYS THR LEU CYS THR SEQRES 3 I 130 GLU LEU THR VAL THR ASP ILE PHE ALA ALA SER LYS ASN SEQRES 4 I 130 THR THR GLU LYS GLU THR PHE CYS ARG ALA ALA THR VAL SEQRES 5 I 130 LEU ARG GLN PHE TYR SER HIS HIS GLU LYS ASP THR ARG SEQRES 6 I 130 CYS LEU GLY ALA THR ALA GLN GLN PHE HIS ARG HIS LYS SEQRES 7 I 130 GLN LEU ILE ARG PHE LEU LYS ARG LEU ASP ARG ASN LEU SEQRES 8 I 130 TRP GLY LEU ALA GLY LEU ASN SER CYS PRO VAL LYS GLU SEQRES 9 I 130 ALA ASN GLN SER THR LEU GLU ASN PHE LEU GLU ARG LEU SEQRES 10 I 130 LYS THR ILE MET ARG GLU LYS TYR SER LYS CYS SER SER SEQRES 1 B 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 B 169 LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 3 B 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 B 169 VAL ASN ALA LEU ASP ASP SER GLY TYR THR PRO LEU HIS SEQRES 5 B 169 LEU ALA ALA GLU ASP GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 6 B 169 LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA ALA ASP ARG SEQRES 7 B 169 LEU GLY ASP THR PRO LEU HIS LEU ALA ALA PHE VAL GLY SEQRES 8 B 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS ALA GLY ALA SEQRES 9 B 169 ASP VAL ASN ALA VAL ASP LEU ALA GLY VAL THR PRO LEU SEQRES 10 B 169 HIS VAL ALA ALA PHE TYR GLY HIS LEU GLU ILE VAL GLU SEQRES 11 B 169 VAL LEU LEU LYS ALA GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 12 B 169 LYS PHE GLY LYS THR PRO ALA ASP ILE ALA ALA ASP ASN SEQRES 13 B 169 GLY HIS GLU ASP ILE ALA GLU VAL LEU GLN LYS LEU ASN SEQRES 1 J 130 MET HIS LYS CYS ASP ILE THR LEU GLN GLU ILE ILE LYS SEQRES 2 J 130 THR LEU ASN SER LEU THR GLU GLN LYS THR LEU CYS THR SEQRES 3 J 130 GLU LEU THR VAL THR ASP ILE PHE ALA ALA SER LYS ASN SEQRES 4 J 130 THR THR GLU LYS GLU THR PHE CYS ARG ALA ALA THR VAL SEQRES 5 J 130 LEU ARG GLN PHE TYR SER HIS HIS GLU LYS ASP THR ARG SEQRES 6 J 130 CYS LEU GLY ALA THR ALA GLN GLN PHE HIS ARG HIS LYS SEQRES 7 J 130 GLN LEU ILE ARG PHE LEU LYS ARG LEU ASP ARG ASN LEU SEQRES 8 J 130 TRP GLY LEU ALA GLY LEU ASN SER CYS PRO VAL LYS GLU SEQRES 9 J 130 ALA ASN GLN SER THR LEU GLU ASN PHE LEU GLU ARG LEU SEQRES 10 J 130 LYS THR ILE MET ARG GLU LYS TYR SER LYS CYS SER SER HET GOL A 201 6 HET GOL A 202 6 HET ACT B1001 4 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *364(H2 O) HELIX 1 AA1 SER A 12 GLY A 25 1 14 HELIX 2 AA2 GLN A 26 GLY A 37 1 12 HELIX 3 AA3 THR A 49 ASP A 57 1 9 HELIX 4 AA4 HIS A 59 HIS A 69 1 11 HELIX 5 AA5 THR A 82 GLY A 91 1 10 HELIX 6 AA6 HIS A 92 ALA A 102 1 11 HELIX 7 AA7 THR A 115 TYR A 123 1 9 HELIX 8 AA8 HIS A 125 ALA A 135 1 11 HELIX 9 AA9 THR A 148 ASN A 156 1 9 HELIX 10 AB1 HIS A 158 LYS A 167 1 10 HELIX 11 AB2 ASP I 4 GLN I 20 1 17 HELIX 12 AB3 THR I 22 GLU I 26 5 5 HELIX 13 AB4 ILE I 32 SER I 36 5 5 HELIX 14 AB5 THR I 40 LYS I 61 1 22 HELIX 15 AB6 HIS I 74 LEU I 90 1 17 HELIX 16 AB7 LEU I 90 GLY I 95 1 6 HELIX 17 AB8 LEU I 109 SER I 125 1 17 HELIX 18 AB9 LYS I 126 SER I 129 5 4 HELIX 19 AC1 ASP B 13 GLY B 25 1 13 HELIX 20 AC2 GLN B 26 GLY B 37 1 12 HELIX 21 AC3 THR B 49 ASP B 57 1 9 HELIX 22 AC4 HIS B 59 HIS B 69 1 11 HELIX 23 AC5 THR B 82 GLY B 91 1 10 HELIX 24 AC6 HIS B 92 ALA B 102 1 11 HELIX 25 AC7 THR B 115 TYR B 123 1 9 HELIX 26 AC8 HIS B 125 ALA B 135 1 11 HELIX 27 AC9 THR B 148 ASN B 156 1 9 HELIX 28 AD1 HIS B 158 LYS B 167 1 10 HELIX 29 AD2 ASP J 4 GLN J 20 1 17 HELIX 30 AD3 THR J 22 GLU J 26 5 5 HELIX 31 AD4 ILE J 32 SER J 36 5 5 HELIX 32 AD5 THR J 40 GLU J 60 1 21 HELIX 33 AD6 ASP J 62 GLY J 67 1 6 HELIX 34 AD7 ALA J 70 LEU J 90 1 21 HELIX 35 AD8 LEU J 90 GLY J 95 1 6 HELIX 36 AD9 LEU J 109 LYS J 126 1 18 SHEET 1 AA1 2 THR I 28 THR I 30 0 SHEET 2 AA1 2 GLN I 106 THR I 108 -1 O SER I 107 N VAL I 29 SHEET 1 AA2 2 THR J 28 THR J 30 0 SHEET 2 AA2 2 GLN J 106 THR J 108 -1 O SER J 107 N VAL J 29 SSBOND 1 CYS I 3 CYS I 127 1555 1555 2.04 SSBOND 2 CYS I 24 CYS I 65 1555 1555 2.03 SSBOND 3 CYS I 46 CYS I 99 1555 1555 2.04 SSBOND 4 CYS J 24 CYS J 65 1555 1555 2.03 SSBOND 5 CYS J 46 CYS J 99 1555 1555 2.05 SITE 1 AC1 9 ASP A 27 LEU A 60 GLU A 61 HOH A 312 SITE 2 AC1 9 HOH A 387 GLY B 58 HIS B 59 LEU B 60 SITE 3 AC1 9 GLU B 61 SITE 1 AC2 5 ARG A 31 LYS A 68 HIS A 69 HOH A 390 SITE 2 AC2 5 LYS J 61 SITE 1 AC3 3 ARG B 31 LYS B 68 HIS B 69 CRYST1 55.250 113.660 117.060 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008543 0.00000