PDB Short entry for 4YET HEADER OXIDOREDUCTASE 24-FEB-15 4YET TITLE X-RAY CRYSTAL STRUCTURE OF SUPEROXIDE DISMUTASE FROM BABESIA BOVIS TITLE 2 SOLVED BY SULFUR SAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BABESIA BOVIS; SOURCE 3 ORGANISM_TAXID: 5865; SOURCE 4 GENE: FE-SOD, BBOV_IV011480; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUPEROXIDE DISMUTASE, SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.W.FAIRMAN,M.C.CLIFTON,J.ABENDROTH,T.E.EDWARDS,D.LORIMER,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 28-FEB-24 4YET 1 LINK REVDAT 5 11-DEC-19 4YET 1 REMARK REVDAT 4 22-NOV-17 4YET 1 REMARK REVDAT 3 13-SEP-17 4YET 1 SOURCE REMARK REVDAT 2 03-JUN-15 4YET 1 JRNL REVDAT 1 15-APR-15 4YET 0 SPRSDE 15-APR-15 4YET 4K2W JRNL AUTH I.Q.PHAN,D.R.DAVIES,N.S.MORETTI,D.SHANMUGAM,I.CESTARI, JRNL AUTH 2 A.ANUPAMA,J.W.FAIRMAN,T.E.EDWARDS,K.STUART,S.SCHENKMAN, JRNL AUTH 3 P.J.MYLER JRNL TITL IRON SUPEROXIDE DISMUTASES IN EUKARYOTIC PATHOGENS: NEW JRNL TITL 2 INSIGHTS FROM APICOMPLEXA AND TRYPANOSOMA STRUCTURES. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 615 2015 JRNL REFN ESSN 2053-230X JRNL PMID 25961325 JRNL DOI 10.1107/S2053230X15004185 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 44841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1672 - 5.4344 1.00 2714 163 0.1425 0.1644 REMARK 3 2 5.4344 - 4.3147 1.00 2735 144 0.1153 0.1306 REMARK 3 3 4.3147 - 3.7696 1.00 2745 135 0.1197 0.1340 REMARK 3 4 3.7696 - 3.4251 1.00 2738 138 0.1426 0.1633 REMARK 3 5 3.4251 - 3.1797 1.00 2736 146 0.1389 0.1736 REMARK 3 6 3.1797 - 2.9922 1.00 2748 129 0.1468 0.1798 REMARK 3 7 2.9922 - 2.8424 1.00 2758 138 0.1434 0.1633 REMARK 3 8 2.8424 - 2.7187 1.00 2764 122 0.1400 0.1894 REMARK 3 9 2.7187 - 2.6140 1.00 2697 138 0.1559 0.1646 REMARK 3 10 2.6140 - 2.5239 1.00 2728 166 0.1527 0.1849 REMARK 3 11 2.5239 - 2.4449 1.00 2753 156 0.1460 0.2221 REMARK 3 12 2.4449 - 2.3751 1.00 2719 153 0.1384 0.1929 REMARK 3 13 2.3751 - 2.3125 1.00 2751 136 0.1448 0.1964 REMARK 3 14 2.3125 - 2.2561 1.00 2722 123 0.1430 0.1445 REMARK 3 15 2.2561 - 2.2048 1.00 2750 146 0.1372 0.1818 REMARK 3 16 2.2048 - 2.1579 1.00 2691 150 0.1357 0.1842 REMARK 3 17 2.1579 - 2.1147 1.00 2768 150 0.1451 0.1734 REMARK 3 18 2.1147 - 2.0748 1.00 2744 138 0.1452 0.2123 REMARK 3 19 2.0748 - 2.0378 1.00 2746 163 0.1473 0.1842 REMARK 3 20 2.0378 - 2.0032 1.00 2682 150 0.1486 0.1998 REMARK 3 21 2.0032 - 1.9709 0.98 2654 158 0.1475 0.1934 REMARK 3 22 1.9709 - 1.9406 0.99 2786 112 0.1512 0.1815 REMARK 3 23 1.9406 - 1.9121 0.98 2667 141 0.1589 0.2397 REMARK 3 24 1.9121 - 1.8851 0.96 2584 156 0.1645 0.2128 REMARK 3 25 1.8851 - 1.8597 0.97 2657 144 0.1665 0.1835 REMARK 3 26 1.8597 - 1.8355 0.95 2668 124 0.1656 0.1962 REMARK 3 27 1.8355 - 1.8126 0.95 2576 149 0.1678 0.1963 REMARK 3 28 1.8126 - 1.7907 0.95 2596 144 0.1758 0.2140 REMARK 3 29 1.7907 - 1.7699 0.93 2532 124 0.1849 0.2256 REMARK 3 30 1.7699 - 1.7500 0.93 2528 166 0.2004 0.2449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3343 REMARK 3 ANGLE : 1.084 4589 REMARK 3 CHIRALITY : 0.052 474 REMARK 3 PLANARITY : 0.006 595 REMARK 3 DIHEDRAL : 12.074 1171 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:48) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1276 65.8855 10.8076 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.1449 REMARK 3 T33: 0.1287 T12: -0.0012 REMARK 3 T13: 0.0055 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.1512 L22: 1.2188 REMARK 3 L33: 1.5771 L12: 0.0957 REMARK 3 L13: -0.0943 L23: 0.1837 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.1376 S13: 0.0535 REMARK 3 S21: 0.1236 S22: -0.0256 S23: 0.1518 REMARK 3 S31: 0.0380 S32: -0.2449 S33: 0.0352 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 49:83) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7383 75.8107 13.9037 REMARK 3 T TENSOR REMARK 3 T11: 0.1188 T22: 0.1110 REMARK 3 T33: 0.1691 T12: 0.0162 REMARK 3 T13: -0.0286 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 1.0375 L22: 1.1097 REMARK 3 L33: 1.4322 L12: 0.1789 REMARK 3 L13: 0.2214 L23: -0.0773 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: -0.1234 S13: 0.2352 REMARK 3 S21: 0.1284 S22: 0.0349 S23: 0.1090 REMARK 3 S31: -0.1313 S32: -0.1136 S33: 0.0474 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 84:90) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3258 74.1194 -11.6082 REMARK 3 T TENSOR REMARK 3 T11: 0.2395 T22: 0.2228 REMARK 3 T33: 0.1663 T12: -0.0654 REMARK 3 T13: -0.0474 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 5.5196 L22: 9.1630 REMARK 3 L33: 3.7977 L12: 2.6646 REMARK 3 L13: -0.4310 L23: -0.9095 REMARK 3 S TENSOR REMARK 3 S11: -0.2466 S12: 0.2907 S13: -0.1906 REMARK 3 S21: -0.3937 S22: 0.0027 S23: -0.0630 REMARK 3 S31: 0.0556 S32: -0.5700 S33: 0.2793 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 91:108) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6295 81.6654 -9.2925 REMARK 3 T TENSOR REMARK 3 T11: 0.2236 T22: 0.2078 REMARK 3 T33: 0.1660 T12: -0.0612 REMARK 3 T13: -0.0306 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 1.9348 L22: 0.6408 REMARK 3 L33: 1.2243 L12: -0.3440 REMARK 3 L13: 0.4377 L23: -0.3816 REMARK 3 S TENSOR REMARK 3 S11: -0.0922 S12: 0.1257 S13: 0.2458 REMARK 3 S21: -0.0769 S22: -0.0948 S23: -0.2648 REMARK 3 S31: -0.4022 S32: 0.3320 S33: 0.1710 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 109:185) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0423 72.1402 3.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: 0.1175 REMARK 3 T33: 0.1303 T12: -0.0320 REMARK 3 T13: -0.0263 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.7772 L22: 0.8734 REMARK 3 L33: 0.9570 L12: -0.2095 REMARK 3 L13: 0.2285 L23: -0.5331 REMARK 3 S TENSOR REMARK 3 S11: -0.0678 S12: 0.0594 S13: 0.1347 REMARK 3 S21: -0.0008 S22: -0.0084 S23: -0.0769 REMARK 3 S31: -0.1646 S32: 0.1127 S33: 0.0558 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 186:199) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0627 82.1889 2.2615 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.1738 REMARK 3 T33: 0.2345 T12: 0.0250 REMARK 3 T13: -0.0276 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 0.9067 L22: 1.4530 REMARK 3 L33: 2.4387 L12: 0.5650 REMARK 3 L13: -1.0059 L23: -1.4882 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: 0.2048 S13: 0.3539 REMARK 3 S21: 0.0462 S22: 0.2875 S23: 0.3675 REMARK 3 S31: -0.3117 S32: -0.5347 S33: -0.2162 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 1:9) REMARK 3 ORIGIN FOR THE GROUP (A): 64.5944 49.0107 11.7120 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.2109 REMARK 3 T33: 0.1808 T12: 0.0131 REMARK 3 T13: 0.0147 T23: -0.0648 REMARK 3 L TENSOR REMARK 3 L11: 1.5048 L22: 2.6564 REMARK 3 L33: 1.1945 L12: 1.2593 REMARK 3 L13: -0.4224 L23: -0.4141 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: -0.0403 S13: -0.2459 REMARK 3 S21: -0.0460 S22: 0.0591 S23: -0.3929 REMARK 3 S31: 0.0666 S32: 0.4648 S33: 0.0376 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 10:48) REMARK 3 ORIGIN FOR THE GROUP (A): 55.6624 50.5833 9.9617 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.1444 REMARK 3 T33: 0.0980 T12: 0.0117 REMARK 3 T13: -0.0002 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.3908 L22: 1.0806 REMARK 3 L33: 1.1929 L12: 0.1809 REMARK 3 L13: -0.0975 L23: 0.3777 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: 0.1962 S13: -0.0693 REMARK 3 S21: -0.0924 S22: 0.0206 S23: -0.0578 REMARK 3 S31: 0.0655 S32: 0.1720 S33: 0.0144 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 49:83) REMARK 3 ORIGIN FOR THE GROUP (A): 62.3226 57.4056 17.3509 REMARK 3 T TENSOR REMARK 3 T11: 0.1031 T22: 0.1483 REMARK 3 T33: 0.1259 T12: 0.0031 REMARK 3 T13: -0.0067 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.1605 L22: 1.5799 REMARK 3 L33: 1.4354 L12: 0.2513 REMARK 3 L13: 0.1887 L23: -0.1061 REMARK 3 S TENSOR REMARK 3 S11: -0.0594 S12: 0.0826 S13: 0.0582 REMARK 3 S21: -0.0439 S22: 0.0242 S23: -0.1621 REMARK 3 S31: -0.0602 S32: 0.2397 S33: 0.0391 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 84:101) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1470 45.7365 37.3519 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.1553 REMARK 3 T33: 0.1551 T12: 0.0150 REMARK 3 T13: 0.0035 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.6637 L22: 2.0406 REMARK 3 L33: 2.7788 L12: 0.0932 REMARK 3 L13: 0.1269 L23: 0.9206 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.1528 S13: -0.2542 REMARK 3 S21: 0.2105 S22: -0.0693 S23: -0.1112 REMARK 3 S31: 0.1703 S32: -0.1931 S33: 0.0487 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 102:147) REMARK 3 ORIGIN FOR THE GROUP (A): 50.3884 58.2010 29.6279 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1100 REMARK 3 T33: 0.1032 T12: 0.0056 REMARK 3 T13: -0.0159 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.6553 L22: 1.0230 REMARK 3 L33: 1.1910 L12: -0.1617 REMARK 3 L13: -0.2023 L23: -0.1707 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.0933 S13: 0.0798 REMARK 3 S21: 0.2031 S22: 0.0168 S23: 0.0033 REMARK 3 S31: -0.0611 S32: -0.0152 S33: 0.0187 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 148:199) REMARK 3 ORIGIN FOR THE GROUP (A): 50.8146 51.1968 23.3835 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.0954 REMARK 3 T33: 0.0972 T12: 0.0114 REMARK 3 T13: -0.0050 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.5053 L22: 0.8795 REMARK 3 L33: 1.2431 L12: -0.1253 REMARK 3 L13: 0.0803 L23: -0.1500 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.0018 S13: -0.0334 REMARK 3 S21: 0.0611 S22: 0.0178 S23: -0.0476 REMARK 3 S31: 0.0986 S32: 0.0338 S33: 0.0015 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YET COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44891 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HCL PH 8.5, 25% PEG 3350,, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.87500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.40500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.40500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.87500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 LYS B 197 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 85 -142.19 -117.63 REMARK 500 ASP A 141 -114.75 55.63 REMARK 500 LYS A 169 -131.06 51.22 REMARK 500 CYS B 85 -142.08 -122.59 REMARK 500 ASP B 141 -114.87 58.23 REMARK 500 LYS B 169 -129.09 50.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HIS A 74 NE2 93.3 REMARK 620 3 ASP A 158 OD2 87.9 113.4 REMARK 620 4 HIS A 162 NE2 91.1 124.4 122.2 REMARK 620 5 HOH A 445 O 176.0 88.6 88.1 90.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 27 NE2 REMARK 620 2 HIS B 74 NE2 94.8 REMARK 620 3 ASP B 158 OD2 84.5 113.2 REMARK 620 4 HIS B 162 NE2 93.1 123.4 123.4 REMARK 620 5 HOH B 449 O 173.9 87.7 89.4 90.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K2W RELATED DB: PDB REMARK 900 THIS ENTRY SUPERSEDES ENTRY 4K2W. MORE EVIDENCE HAS SHOWN US THAT REMARK 900 THE ZINCS PRESENT IN 4K2W SHOULD BE IRON IONS INSTEAD OF ZINCS. REMARK 900 RELATED ID: SSGCID-BABOA.01199.A RELATED DB: TARGETTRACK DBREF 4YET A 1 199 UNP O15904 O15904_BABBO 1 199 DBREF 4YET B 1 199 UNP O15904 O15904_BABBO 1 199 SEQADV 4YET GLY A -3 UNP O15904 EXPRESSION TAG SEQADV 4YET PRO A -2 UNP O15904 EXPRESSION TAG SEQADV 4YET GLY A -1 UNP O15904 EXPRESSION TAG SEQADV 4YET SER A 0 UNP O15904 EXPRESSION TAG SEQADV 4YET GLY B -3 UNP O15904 EXPRESSION TAG SEQADV 4YET PRO B -2 UNP O15904 EXPRESSION TAG SEQADV 4YET GLY B -1 UNP O15904 EXPRESSION TAG SEQADV 4YET SER B 0 UNP O15904 EXPRESSION TAG SEQRES 1 A 203 GLY PRO GLY SER MET ALA PHE LYS LEU PRO ALA LEU PRO SEQRES 2 A 203 TYR GLY MET ARG GLU LEU ILE PRO HIS ILE SER GLU GLU SEQRES 3 A 203 THR LEU SER PHE HIS TYR GLY LYS HIS HIS ALA GLY TYR SEQRES 4 A 203 VAL ASN LYS LEU ASN SER LEU ILE LYS GLY THR PRO MET SEQRES 5 A 203 GLU SER CYS THR ILE GLU GLU LEU ILE LEU GLY GLN THR SEQRES 6 A 203 GLY ALA VAL PHE ASN ASN ALA ALA GLN ILE TRP ASN HIS SEQRES 7 A 203 THR PHE TYR TRP ASN SER MET GLY PRO ASN CYS GLY GLY SEQRES 8 A 203 GLU PRO THR GLY PRO ILE ARG LYS LYS ILE GLU GLU LYS SEQRES 9 A 203 PHE GLY SER PHE SER ALA PHE LYS THR ASP PHE SER ASN SEQRES 10 A 203 LEU LEU ALA GLY HIS PHE GLY SER GLY TRP GLY TRP LEU SEQRES 11 A 203 VAL LEU LYS ASP ASP GLY THR ALA ASP ILE VAL GLN THR SEQRES 12 A 203 HIS ASP ALA GLY SER PRO LEU LYS GLU ASN LEU GLY ARG SEQRES 13 A 203 PRO LEU LEU CYS CYS ASP VAL TRP GLU HIS ALA TYR TYR SEQRES 14 A 203 ILE ASP TYR LYS ASN ASP ARG LEU SER TYR ILE ASN SER SEQRES 15 A 203 TRP TRP ASN LEU VAL ASN TRP ASP PHE ALA ASN LYS ASN SEQRES 16 A 203 LEU GLU ALA PRO PHE LYS TRP SER SEQRES 1 B 203 GLY PRO GLY SER MET ALA PHE LYS LEU PRO ALA LEU PRO SEQRES 2 B 203 TYR GLY MET ARG GLU LEU ILE PRO HIS ILE SER GLU GLU SEQRES 3 B 203 THR LEU SER PHE HIS TYR GLY LYS HIS HIS ALA GLY TYR SEQRES 4 B 203 VAL ASN LYS LEU ASN SER LEU ILE LYS GLY THR PRO MET SEQRES 5 B 203 GLU SER CYS THR ILE GLU GLU LEU ILE LEU GLY GLN THR SEQRES 6 B 203 GLY ALA VAL PHE ASN ASN ALA ALA GLN ILE TRP ASN HIS SEQRES 7 B 203 THR PHE TYR TRP ASN SER MET GLY PRO ASN CYS GLY GLY SEQRES 8 B 203 GLU PRO THR GLY PRO ILE ARG LYS LYS ILE GLU GLU LYS SEQRES 9 B 203 PHE GLY SER PHE SER ALA PHE LYS THR ASP PHE SER ASN SEQRES 10 B 203 LEU LEU ALA GLY HIS PHE GLY SER GLY TRP GLY TRP LEU SEQRES 11 B 203 VAL LEU LYS ASP ASP GLY THR ALA ASP ILE VAL GLN THR SEQRES 12 B 203 HIS ASP ALA GLY SER PRO LEU LYS GLU ASN LEU GLY ARG SEQRES 13 B 203 PRO LEU LEU CYS CYS ASP VAL TRP GLU HIS ALA TYR TYR SEQRES 14 B 203 ILE ASP TYR LYS ASN ASP ARG LEU SER TYR ILE ASN SER SEQRES 15 B 203 TRP TRP ASN LEU VAL ASN TRP ASP PHE ALA ASN LYS ASN SEQRES 16 B 203 LEU GLU ALA PRO PHE LYS TRP SER HET FE A 300 1 HET FE B 300 1 HETNAM FE FE (III) ION FORMUL 3 FE 2(FE 3+) FORMUL 5 HOH *408(H2 O) HELIX 1 AA1 SER A 20 TYR A 28 1 9 HELIX 2 AA2 LYS A 30 LYS A 44 1 15 HELIX 3 AA3 THR A 46 CYS A 51 5 6 HELIX 4 AA4 THR A 52 GLN A 60 1 9 HELIX 5 AA5 THR A 61 SER A 80 1 20 HELIX 6 AA6 THR A 90 GLY A 102 1 13 HELIX 7 AA7 SER A 103 HIS A 118 1 16 HELIX 8 AA8 TRP A 160 ALA A 163 5 4 HELIX 9 AA9 TYR A 164 LYS A 169 1 6 HELIX 10 AB1 ASP A 171 ASN A 181 1 11 HELIX 11 AB2 ASN A 184 ALA A 194 1 11 HELIX 12 AB3 SER B 20 TYR B 28 1 9 HELIX 13 AB4 LYS B 30 LYS B 44 1 15 HELIX 14 AB5 THR B 46 CYS B 51 5 6 HELIX 15 AB6 THR B 52 GLN B 60 1 9 HELIX 16 AB7 THR B 61 SER B 80 1 20 HELIX 17 AB8 GLY B 91 GLY B 102 1 12 HELIX 18 AB9 SER B 103 HIS B 118 1 16 HELIX 19 AC1 TRP B 160 ALA B 163 5 4 HELIX 20 AC2 TYR B 164 LYS B 169 1 6 HELIX 21 AC3 ASP B 171 TRP B 180 1 10 HELIX 22 AC4 ASN B 184 ALA B 194 1 11 SHEET 1 AA1 3 ALA A 134 HIS A 140 0 SHEET 2 AA1 3 GLY A 122 LEU A 128 -1 N VAL A 127 O ASP A 135 SHEET 3 AA1 3 ARG A 152 ASP A 158 -1 O LEU A 154 N LEU A 126 SHEET 1 AA2 3 ALA B 134 HIS B 140 0 SHEET 2 AA2 3 GLY B 122 LEU B 128 -1 N VAL B 127 O ASP B 135 SHEET 3 AA2 3 ARG B 152 ASP B 158 -1 O LEU B 154 N LEU B 126 LINK NE2 HIS A 27 FE FE A 300 1555 1555 2.18 LINK NE2 HIS A 74 FE FE A 300 1555 1555 2.16 LINK OD2 ASP A 158 FE FE A 300 1555 1555 1.99 LINK NE2 HIS A 162 FE FE A 300 1555 1555 2.11 LINK FE FE A 300 O HOH A 445 1555 1555 2.21 LINK NE2 HIS B 27 FE FE B 300 1555 1555 2.19 LINK NE2 HIS B 74 FE FE B 300 1555 1555 2.11 LINK OD2 ASP B 158 FE FE B 300 1555 1555 2.01 LINK NE2 HIS B 162 FE FE B 300 1555 1555 2.15 LINK FE FE B 300 O HOH B 449 1555 1555 2.22 CISPEP 1 ILE A 16 PRO A 17 0 6.47 CISPEP 2 ILE B 16 PRO B 17 0 2.67 SITE 1 AC1 5 HIS A 27 HIS A 74 ASP A 158 HIS A 162 SITE 2 AC1 5 HOH A 445 SITE 1 AC2 5 HIS B 27 HIS B 74 ASP B 158 HIS B 162 SITE 2 AC2 5 HOH B 449 CRYST1 55.750 69.090 114.810 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017937 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008710 0.00000