PDB Short entry for 4YIQ HEADER CELL ADHESION 02-MAR-15 4YIQ TITLE STRUCTURE OF THE CEACAM6-CEACAM8 HETERODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CD67 ANTIGEN,CARCINOEMBRYONIC ANTIGEN CGM6,NON-SPECIFIC COMPND 5 CROSS-REACTING ANTIGEN NCA-95; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 6; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: NON-SPECIFIC CROSSREACTING ANTIGEN,NORMAL CROSS-REACTING COMPND 11 ANTIGEN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CEACAM8, CGM6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CEACAM6, NCA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR D.A.BONSOR,E.J.SUNDBERG REVDAT 5 27-SEP-23 4YIQ 1 JRNL REMARK REVDAT 4 18-NOV-15 4YIQ 1 JRNL REVDAT 3 04-NOV-15 4YIQ 1 JRNL REVDAT 2 21-OCT-15 4YIQ 1 JRNL REVDAT 1 07-OCT-15 4YIQ 0 JRNL AUTH D.A.BONSOR,S.GUNTHER,R.BEADENKOPF,D.BECKETT,E.J.SUNDBERG JRNL TITL DIVERSE OLIGOMERIC STATES OF CEACAM IGV DOMAINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 13561 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26483485 JRNL DOI 10.1073/PNAS.1509511112 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 48753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3371 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.574 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3484 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3285 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4758 ; 1.230 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7541 ; 0.950 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 6.093 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;33.969 ;25.148 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;10.894 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.642 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 542 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4045 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 813 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1729 ; 1.507 ; 1.544 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1728 ; 1.507 ; 1.545 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2159 ; 2.083 ; 2.303 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 108 C 2 108 6243 0.110 0.050 REMARK 3 2 B 2 107 D 2 107 6222 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6070 30.9250 -18.7200 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.3418 REMARK 3 T33: 0.0556 T12: 0.0274 REMARK 3 T13: 0.0172 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 2.2061 L22: 1.8220 REMARK 3 L33: 1.5803 L12: -0.6166 REMARK 3 L13: -0.2749 L23: -0.4609 REMARK 3 S TENSOR REMARK 3 S11: 0.1032 S12: 0.2851 S13: 0.2534 REMARK 3 S21: -0.1702 S22: 0.0298 S23: 0.0595 REMARK 3 S31: -0.1533 S32: -0.1443 S33: -0.1330 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 108 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9540 25.1510 -29.2230 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.3448 REMARK 3 T33: 0.0147 T12: -0.0778 REMARK 3 T13: 0.0232 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.9722 L22: 2.9960 REMARK 3 L33: 1.2199 L12: 1.1028 REMARK 3 L13: 0.3508 L23: 0.3340 REMARK 3 S TENSOR REMARK 3 S11: 0.0376 S12: 0.1558 S13: 0.0370 REMARK 3 S21: 0.1654 S22: -0.0726 S23: 0.1533 REMARK 3 S31: 0.1976 S32: -0.0762 S33: 0.0350 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0360 13.9320 -9.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.0153 T22: 0.2359 REMARK 3 T33: 0.0411 T12: -0.0090 REMARK 3 T13: 0.0165 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.9445 L22: 1.6253 REMARK 3 L33: 2.3605 L12: -0.1173 REMARK 3 L13: 1.2854 L23: 0.1824 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: 0.0673 S13: -0.1563 REMARK 3 S21: 0.0267 S22: 0.0401 S23: -0.0886 REMARK 3 S31: -0.0179 S32: 0.0996 S33: -0.0614 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 108 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5940 41.3850 -37.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.3558 REMARK 3 T33: 0.0314 T12: -0.0574 REMARK 3 T13: -0.0226 T23: 0.0914 REMARK 3 L TENSOR REMARK 3 L11: 2.3691 L22: 1.6539 REMARK 3 L33: 1.8359 L12: 0.2836 REMARK 3 L13: -0.2962 L23: 0.0706 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: 0.2679 S13: 0.0942 REMARK 3 S21: -0.1567 S22: 0.0626 S23: -0.0538 REMARK 3 S31: 0.0965 S32: 0.0510 S33: -0.0154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51361 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 68.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 1.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4Y88 4Y8A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RATIO OF PROTEIN:RESERVOIR = 1:0.2 REMARK 280 RESERVOIR SOLUTION; 20% PEG 8000, 0.2 M SODIUM CHLORIDE, 0.1 M REMARK 280 SODIUM PHOSPHATE/CITRIC ACID, PH 4.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.23250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.84550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.59600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.84550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.23250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.59600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA C 1 REMARK 465 ALA B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 206 O HOH D 215 1.79 REMARK 500 O HOH A 202 O HOH A 207 1.97 REMARK 500 O HOH B 364 O HOH B 366 2.05 REMARK 500 O HOH B 346 O HOH B 367 2.06 REMARK 500 O HOH D 214 O HOH D 230 2.08 REMARK 500 O GLN C 27 O HOH C 219 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 112.74 -161.70 REMARK 500 ALA A 72 -3.61 78.39 REMARK 500 ASP C 41 110.13 -160.87 REMARK 500 ASP B 41 119.55 -166.13 REMARK 500 ALA B 72 -1.46 79.33 REMARK 500 LEU B 96 18.81 56.29 REMARK 500 ASP D 41 117.13 -166.09 REMARK 500 ALA D 72 -0.19 70.48 REMARK 500 LEU D 96 17.01 58.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 202 DBREF 4YIQ A 1 108 UNP P31997 CEAM8_HUMAN 34 141 DBREF 4YIQ C 1 108 UNP P31997 CEAM8_HUMAN 34 141 DBREF 4YIQ B 1 108 UNP P40199 CEAM6_HUMAN 34 141 DBREF 4YIQ D 1 108 UNP P40199 CEAM6_HUMAN 34 141 SEQRES 1 A 108 ALA GLN LEU THR ILE GLU ALA VAL PRO SER ASN ALA ALA SEQRES 2 A 108 GLU GLY LYS GLU VAL LEU LEU LEU VAL HIS ASN LEU PRO SEQRES 3 A 108 GLN ASP PRO ARG GLY TYR ASN TRP TYR LYS GLY GLU THR SEQRES 4 A 108 VAL ASP ALA ASN ARG ARG ILE ILE GLY TYR VAL ILE SER SEQRES 5 A 108 ASN GLN GLN ILE THR PRO GLY PRO ALA TYR SER ASN ARG SEQRES 6 A 108 GLU THR ILE TYR PRO ASN ALA SER LEU LEU MET ARG ASN SEQRES 7 A 108 VAL THR ARG ASN ASP THR GLY SER TYR THR LEU GLN VAL SEQRES 8 A 108 ILE LYS LEU ASN LEU MET SER GLU GLU VAL THR GLY GLN SEQRES 9 A 108 PHE SER VAL HIS SEQRES 1 C 108 ALA GLN LEU THR ILE GLU ALA VAL PRO SER ASN ALA ALA SEQRES 2 C 108 GLU GLY LYS GLU VAL LEU LEU LEU VAL HIS ASN LEU PRO SEQRES 3 C 108 GLN ASP PRO ARG GLY TYR ASN TRP TYR LYS GLY GLU THR SEQRES 4 C 108 VAL ASP ALA ASN ARG ARG ILE ILE GLY TYR VAL ILE SER SEQRES 5 C 108 ASN GLN GLN ILE THR PRO GLY PRO ALA TYR SER ASN ARG SEQRES 6 C 108 GLU THR ILE TYR PRO ASN ALA SER LEU LEU MET ARG ASN SEQRES 7 C 108 VAL THR ARG ASN ASP THR GLY SER TYR THR LEU GLN VAL SEQRES 8 C 108 ILE LYS LEU ASN LEU MET SER GLU GLU VAL THR GLY GLN SEQRES 9 C 108 PHE SER VAL HIS SEQRES 1 B 108 ALA LYS LEU THR ILE GLU SER THR PRO PHE ASN VAL ALA SEQRES 2 B 108 GLU GLY LYS GLU VAL LEU LEU LEU ALA HIS ASN LEU PRO SEQRES 3 B 108 GLN ASN ARG ILE GLY TYR SER TRP TYR LYS GLY GLU ARG SEQRES 4 B 108 VAL ASP GLY ASN SER LEU ILE VAL GLY TYR VAL ILE GLY SEQRES 5 B 108 THR GLN GLN ALA THR PRO GLY PRO ALA TYR SER GLY ARG SEQRES 6 B 108 GLU THR ILE TYR PRO ASN ALA SER LEU LEU ILE GLN ASN SEQRES 7 B 108 VAL THR GLN ASN ASP THR GLY PHE TYR THR LEU GLN VAL SEQRES 8 B 108 ILE LYS SER ASP LEU VAL ASN GLU GLU ALA THR GLY GLN SEQRES 9 B 108 PHE HIS VAL TYR SEQRES 1 D 108 ALA LYS LEU THR ILE GLU SER THR PRO PHE ASN VAL ALA SEQRES 2 D 108 GLU GLY LYS GLU VAL LEU LEU LEU ALA HIS ASN LEU PRO SEQRES 3 D 108 GLN ASN ARG ILE GLY TYR SER TRP TYR LYS GLY GLU ARG SEQRES 4 D 108 VAL ASP GLY ASN SER LEU ILE VAL GLY TYR VAL ILE GLY SEQRES 5 D 108 THR GLN GLN ALA THR PRO GLY PRO ALA TYR SER GLY ARG SEQRES 6 D 108 GLU THR ILE TYR PRO ASN ALA SER LEU LEU ILE GLN ASN SEQRES 7 D 108 VAL THR GLN ASN ASP THR GLY PHE TYR THR LEU GLN VAL SEQRES 8 D 108 ILE LYS SER ASP LEU VAL ASN GLU GLU ALA THR GLY GLN SEQRES 9 D 108 PHE HIS VAL TYR HET GOL B 201 6 HET CL B 202 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 CL CL 1- FORMUL 7 HOH *205(H2 O) HELIX 1 AA1 ASP A 41 ASN A 43 5 3 HELIX 2 AA2 THR A 80 THR A 84 5 5 HELIX 3 AA3 ASP C 41 ASN C 43 5 3 HELIX 4 AA4 THR C 80 THR C 84 5 5 HELIX 5 AA5 ASP B 41 ASN B 43 5 3 HELIX 6 AA6 THR B 80 THR B 84 5 5 HELIX 7 AA7 ASP D 41 ASN D 43 5 3 HELIX 8 AA8 THR D 80 THR D 84 5 5 SHEET 1 AA1 4 THR A 4 VAL A 8 0 SHEET 2 AA1 4 VAL A 18 HIS A 23 -1 O LEU A 19 N VAL A 8 SHEET 3 AA1 4 LEU A 74 MET A 76 -1 O LEU A 74 N LEU A 20 SHEET 4 AA1 4 GLU A 66 ILE A 68 -1 N THR A 67 O LEU A 75 SHEET 1 AA2 6 ASN A 11 ALA A 12 0 SHEET 2 AA2 6 SER A 98 VAL A 107 1 O SER A 106 N ALA A 12 SHEET 3 AA2 6 GLY A 85 LYS A 93 -1 N VAL A 91 O GLU A 99 SHEET 4 AA2 6 PRO A 29 LYS A 36 -1 N ARG A 30 O ILE A 92 SHEET 5 AA2 6 ARG A 45 VAL A 50 -1 O ILE A 46 N TRP A 34 SHEET 6 AA2 6 GLN A 55 ILE A 56 -1 O GLN A 55 N VAL A 50 SHEET 1 AA3 4 THR C 4 VAL C 8 0 SHEET 2 AA3 4 VAL C 18 HIS C 23 -1 O HIS C 23 N THR C 4 SHEET 3 AA3 4 LEU C 74 MET C 76 -1 O LEU C 74 N LEU C 20 SHEET 4 AA3 4 GLU C 66 ILE C 68 -1 N THR C 67 O LEU C 75 SHEET 1 AA4 6 ASN C 11 ALA C 13 0 SHEET 2 AA4 6 SER C 98 HIS C 108 1 O SER C 106 N ALA C 12 SHEET 3 AA4 6 GLY C 85 LYS C 93 -1 N LEU C 89 O VAL C 101 SHEET 4 AA4 6 PRO C 29 LYS C 36 -1 N ARG C 30 O ILE C 92 SHEET 5 AA4 6 ARG C 45 VAL C 50 -1 O ILE C 46 N TRP C 34 SHEET 6 AA4 6 GLN C 55 ILE C 56 -1 O GLN C 55 N VAL C 50 SHEET 1 AA5 4 THR B 4 THR B 8 0 SHEET 2 AA5 4 VAL B 18 HIS B 23 -1 O LEU B 21 N GLU B 6 SHEET 3 AA5 4 LEU B 74 ILE B 76 -1 O LEU B 74 N LEU B 20 SHEET 4 AA5 4 GLU B 66 ILE B 68 -1 N THR B 67 O LEU B 75 SHEET 1 AA6 6 ASN B 11 VAL B 12 0 SHEET 2 AA6 6 GLU B 99 VAL B 107 1 O HIS B 106 N VAL B 12 SHEET 3 AA6 6 GLY B 85 LYS B 93 -1 N TYR B 87 O GLY B 103 SHEET 4 AA6 6 ARG B 29 LYS B 36 -1 N ILE B 30 O ILE B 92 SHEET 5 AA6 6 LEU B 45 VAL B 50 -1 O ILE B 46 N TRP B 34 SHEET 6 AA6 6 GLN B 55 PRO B 58 -1 O THR B 57 N GLY B 48 SHEET 1 AA7 4 THR D 4 THR D 8 0 SHEET 2 AA7 4 VAL D 18 HIS D 23 -1 O LEU D 21 N GLU D 6 SHEET 3 AA7 4 LEU D 74 ILE D 76 -1 O LEU D 74 N LEU D 20 SHEET 4 AA7 4 GLU D 66 ILE D 68 -1 N THR D 67 O LEU D 75 SHEET 1 AA8 6 ASN D 11 VAL D 12 0 SHEET 2 AA8 6 GLU D 99 VAL D 107 1 O HIS D 106 N VAL D 12 SHEET 3 AA8 6 GLY D 85 LYS D 93 -1 N TYR D 87 O GLY D 103 SHEET 4 AA8 6 ARG D 29 LYS D 36 -1 N ILE D 30 O ILE D 92 SHEET 5 AA8 6 LEU D 45 VAL D 50 -1 O ILE D 46 N TRP D 34 SHEET 6 AA8 6 GLN D 55 PRO D 58 -1 O THR D 57 N GLY D 48 CISPEP 1 VAL A 8 PRO A 9 0 -6.96 CISPEP 2 VAL C 8 PRO C 9 0 -7.85 CISPEP 3 THR B 8 PRO B 9 0 -13.13 CISPEP 4 THR D 8 PRO D 9 0 -12.10 SITE 1 AC1 6 LEU B 21 ASN B 71 SER B 73 HOH B 305 SITE 2 AC1 6 THR D 8 LEU D 75 SITE 1 AC2 2 THR B 8 HOH B 310 CRYST1 62.465 97.192 97.691 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016009 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010236 0.00000