PDB Short entry for 4YLS HEADER LIGASE 05-MAR-15 4YLS TITLE TUBULIN GLUTAMYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULIN POLYGLUTAMYLASE TTLL7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 36-518; COMPND 5 SYNONYM: TESTIS DEVELOPMENT PROTEIN NYD-SP30,TUBULIN--TYROSINE COMPND 6 LIGASE-LIKE PROTEIN 7; COMPND 7 EC: 6.-.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTLL7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.P.GARNHAM,A.VEMU,E.M.WILSON-KUBALEK,I.YU,A.SZYK,G.C.LANDER, AUTHOR 2 R.A.MILLIGAN,A.ROLL-MECAK REVDAT 4 28-FEB-24 4YLS 1 REMARK REVDAT 3 25-DEC-19 4YLS 1 REMARK REVDAT 2 20-SEP-17 4YLS 1 SOURCE REMARK REVDAT 1 17-JUN-15 4YLS 0 JRNL AUTH C.P.GARNHAM,A.VEMU,E.M.WILSON-KUBALEK,I.YU,A.SZYK, JRNL AUTH 2 G.C.LANDER,R.A.MILLIGAN,A.ROLL-MECAK JRNL TITL MULTIVALENT MICROTUBULE RECOGNITION BY TUBULIN TYROSINE JRNL TITL 2 LIGASE-LIKE FAMILY GLUTAMYLASES. JRNL REF CELL V. 161 1112 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 25959773 JRNL DOI 10.1016/J.CELL.2015.04.003 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 19214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3677 - 4.9720 1.00 2780 158 0.2061 0.2268 REMARK 3 2 4.9720 - 3.9471 1.00 2691 147 0.1847 0.2012 REMARK 3 3 3.9471 - 3.4484 1.00 2648 135 0.2045 0.2701 REMARK 3 4 3.4484 - 3.1332 1.00 2667 136 0.2273 0.2977 REMARK 3 5 3.1332 - 2.9086 1.00 2603 146 0.2378 0.2863 REMARK 3 6 2.9086 - 2.7372 0.97 2574 137 0.2477 0.2746 REMARK 3 7 2.7372 - 2.6000 0.87 2270 122 0.2609 0.3162 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2669 REMARK 3 ANGLE : 0.591 3631 REMARK 3 CHIRALITY : 0.023 412 REMARK 3 PLANARITY : 0.002 457 REMARK 3 DIHEDRAL : 13.148 943 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 40:106) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5417 -18.9007 -37.7614 REMARK 3 T TENSOR REMARK 3 T11: 0.4120 T22: 0.8008 REMARK 3 T33: 0.4863 T12: -0.0645 REMARK 3 T13: -0.0232 T23: -0.1062 REMARK 3 L TENSOR REMARK 3 L11: 5.7851 L22: 3.9211 REMARK 3 L33: 3.3682 L12: -1.7901 REMARK 3 L13: -1.8813 L23: 0.9553 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: 0.5528 S13: -0.6109 REMARK 3 S21: -0.3362 S22: -0.1307 S23: 0.0157 REMARK 3 S31: -0.0134 S32: -0.0997 S33: 0.0438 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 107:145) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2589 -24.9858 -6.6585 REMARK 3 T TENSOR REMARK 3 T11: 0.6301 T22: 1.2539 REMARK 3 T33: 0.7493 T12: -0.0235 REMARK 3 T13: -0.0837 T23: 0.3125 REMARK 3 L TENSOR REMARK 3 L11: 2.5552 L22: 4.7302 REMARK 3 L33: 8.0106 L12: -1.9940 REMARK 3 L13: -1.5690 L23: -3.4547 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: -1.7646 S13: -0.9628 REMARK 3 S21: 0.3169 S22: 0.1973 S23: -0.2064 REMARK 3 S31: 0.8408 S32: 0.2367 S33: -0.0727 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 146:155) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7998 -27.2962 11.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.7882 T22: 1.5977 REMARK 3 T33: 0.9267 T12: -0.1418 REMARK 3 T13: -0.0230 T23: 0.2102 REMARK 3 L TENSOR REMARK 3 L11: 4.2418 L22: 4.9360 REMARK 3 L33: 9.7223 L12: -4.5360 REMARK 3 L13: 6.2268 L23: -6.8852 REMARK 3 S TENSOR REMARK 3 S11: -0.2359 S12: -3.0909 S13: -0.8998 REMARK 3 S21: 0.2602 S22: 0.6209 S23: 0.7241 REMARK 3 S31: 0.1457 S32: -2.0156 S33: -0.2117 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 156:182) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6226 -30.4172 -2.0189 REMARK 3 T TENSOR REMARK 3 T11: 0.9427 T22: 1.3833 REMARK 3 T33: 0.8974 T12: -0.0543 REMARK 3 T13: 0.0536 T23: 0.5256 REMARK 3 L TENSOR REMARK 3 L11: 7.6652 L22: 2.5099 REMARK 3 L33: 1.4627 L12: -3.8532 REMARK 3 L13: 2.7424 L23: -1.9024 REMARK 3 S TENSOR REMARK 3 S11: 0.2509 S12: -1.5669 S13: -0.6975 REMARK 3 S21: 0.4889 S22: 0.0481 S23: 0.0782 REMARK 3 S31: 1.1866 S32: -0.3415 S33: -0.1653 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 183:188) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9727 -31.6830 -7.3464 REMARK 3 T TENSOR REMARK 3 T11: 1.3957 T22: 0.9438 REMARK 3 T33: 1.0972 T12: 0.2130 REMARK 3 T13: -0.1140 T23: 0.0950 REMARK 3 L TENSOR REMARK 3 L11: 4.6421 L22: 9.0536 REMARK 3 L33: 1.8763 L12: 1.3147 REMARK 3 L13: 1.1926 L23: 1.9396 REMARK 3 S TENSOR REMARK 3 S11: 0.6136 S12: 0.5237 S13: -1.3469 REMARK 3 S21: 1.9311 S22: 0.3813 S23: 0.2118 REMARK 3 S31: 3.3147 S32: 0.5874 S33: -1.0348 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 189:294) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4078 -8.5709 -11.9619 REMARK 3 T TENSOR REMARK 3 T11: 0.4418 T22: 0.8181 REMARK 3 T33: 0.4016 T12: -0.0449 REMARK 3 T13: -0.0038 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 3.7460 L22: 2.4355 REMARK 3 L33: 5.6785 L12: -0.4275 REMARK 3 L13: -0.4405 L23: 1.1551 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: -0.4920 S13: 0.0438 REMARK 3 S21: 0.2582 S22: -0.0120 S23: 0.2461 REMARK 3 S31: -0.1080 S32: -0.5577 S33: 0.0872 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 295:379) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1143 -13.9133 -23.9690 REMARK 3 T TENSOR REMARK 3 T11: 0.3421 T22: 0.5254 REMARK 3 T33: 0.4148 T12: -0.0841 REMARK 3 T13: -0.0014 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 3.8868 L22: 1.4877 REMARK 3 L33: 3.4455 L12: -0.8773 REMARK 3 L13: 0.5255 L23: 0.1808 REMARK 3 S TENSOR REMARK 3 S11: 0.1440 S12: -0.1141 S13: -0.1837 REMARK 3 S21: 0.0082 S22: -0.0531 S23: -0.0200 REMARK 3 S31: -0.0888 S32: 0.0192 S33: -0.1227 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 380:453) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6959 -3.4230 -35.3710 REMARK 3 T TENSOR REMARK 3 T11: 1.1112 T22: 1.3210 REMARK 3 T33: 0.8139 T12: -0.2432 REMARK 3 T13: 0.2051 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 8.3885 L22: 6.6863 REMARK 3 L33: 9.3766 L12: -6.0739 REMARK 3 L13: -8.3871 L23: 7.1867 REMARK 3 S TENSOR REMARK 3 S11: 1.4009 S12: 0.5967 S13: 1.5703 REMARK 3 S21: -0.7991 S22: 0.2797 S23: -0.8304 REMARK 3 S31: -3.6023 S32: 1.4559 S33: -1.7527 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 454:476) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4761 -5.4428 -18.6867 REMARK 3 T TENSOR REMARK 3 T11: 0.4815 T22: 0.9505 REMARK 3 T33: 0.5068 T12: -0.2062 REMARK 3 T13: 0.0723 T23: -0.1102 REMARK 3 L TENSOR REMARK 3 L11: 5.3382 L22: 4.7405 REMARK 3 L33: 5.2520 L12: 0.9531 REMARK 3 L13: 3.9551 L23: -1.4753 REMARK 3 S TENSOR REMARK 3 S11: -0.1096 S12: -0.7098 S13: 0.7525 REMARK 3 S21: 0.2009 S22: -0.0221 S23: -0.5918 REMARK 3 S31: -0.6542 S32: 0.6119 S33: 0.2043 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 477:484) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3563 -24.0417 -18.8204 REMARK 3 T TENSOR REMARK 3 T11: 0.4482 T22: 1.4544 REMARK 3 T33: 0.7533 T12: -0.0193 REMARK 3 T13: -0.0741 T23: 0.2743 REMARK 3 L TENSOR REMARK 3 L11: 6.9732 L22: 8.8204 REMARK 3 L33: 7.4387 L12: -3.8888 REMARK 3 L13: 5.0753 L23: -1.7873 REMARK 3 S TENSOR REMARK 3 S11: -0.0903 S12: -1.2714 S13: -1.3343 REMARK 3 S21: 0.1255 S22: 1.1128 S23: 1.2653 REMARK 3 S31: 0.5312 S32: -0.9290 S33: -0.9783 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YLS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MAGNESIUM ACETATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.72250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.72250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.56300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.16200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.56300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.16200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.72250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.56300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.16200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.72250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.56300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.16200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 32 REMARK 465 SER A 33 REMARK 465 PHE A 34 REMARK 465 THR A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 LYS A 38 REMARK 465 GLY A 39 REMARK 465 ALA A 162 REMARK 465 ASN A 163 REMARK 465 GLY A 164 REMARK 465 ALA A 165 REMARK 465 MET A 166 REMARK 465 GLY A 167 REMARK 465 HIS A 168 REMARK 465 GLY A 169 REMARK 465 GLY A 176 REMARK 465 ASP A 177 REMARK 465 LYS A 178 REMARK 465 LEU A 179 REMARK 465 PRO A 180 REMARK 465 PRO A 236 REMARK 465 ASN A 237 REMARK 465 GLU A 238 REMARK 465 SER A 239 REMARK 465 ASN A 240 REMARK 465 LEU A 241 REMARK 465 THR A 242 REMARK 465 GLN A 243 REMARK 465 LEU A 244 REMARK 465 TYR A 245 REMARK 465 MET A 246 REMARK 465 HIS A 247 REMARK 465 LEU A 248 REMARK 465 THR A 249 REMARK 465 ASN A 250 REMARK 465 TYR A 251 REMARK 465 SER A 252 REMARK 465 VAL A 253 REMARK 465 ASN A 254 REMARK 465 LYS A 255 REMARK 465 HIS A 256 REMARK 465 ASN A 257 REMARK 465 GLU A 258 REMARK 465 HIS A 259 REMARK 465 PHE A 260 REMARK 465 GLU A 261 REMARK 465 ARG A 262 REMARK 465 ASP A 263 REMARK 465 GLU A 264 REMARK 465 THR A 265 REMARK 465 GLU A 266 REMARK 465 ASN A 267 REMARK 465 LYS A 268 REMARK 465 SER A 383 REMARK 465 ASP A 384 REMARK 465 LYS A 385 REMARK 465 ARG A 386 REMARK 465 ARG A 387 REMARK 465 ASN A 388 REMARK 465 LEU A 389 REMARK 465 ALA A 390 REMARK 465 LYS A 391 REMARK 465 GLN A 392 REMARK 465 LYS A 393 REMARK 465 ALA A 394 REMARK 465 GLU A 395 REMARK 465 ALA A 396 REMARK 465 GLN A 397 REMARK 465 ARG A 398 REMARK 465 ARG A 399 REMARK 465 LEU A 400 REMARK 465 TYR A 401 REMARK 465 GLY A 402 REMARK 465 GLN A 403 REMARK 465 ASN A 404 REMARK 465 SER A 405 REMARK 465 ILE A 406 REMARK 465 LYS A 407 REMARK 465 ARG A 408 REMARK 465 LEU A 409 REMARK 465 LEU A 410 REMARK 465 PRO A 411 REMARK 465 GLY A 412 REMARK 465 SER A 413 REMARK 465 SER A 414 REMARK 465 ASP A 415 REMARK 465 TRP A 416 REMARK 465 GLU A 417 REMARK 465 GLN A 418 REMARK 465 GLN A 419 REMARK 465 ARG A 420 REMARK 465 HIS A 421 REMARK 465 GLN A 422 REMARK 465 LEU A 423 REMARK 465 GLU A 424 REMARK 465 ARG A 425 REMARK 465 ARG A 426 REMARK 465 LYS A 427 REMARK 465 GLU A 428 REMARK 465 GLU A 429 REMARK 465 LEU A 430 REMARK 465 LYS A 431 REMARK 465 GLU A 432 REMARK 465 ARG A 433 REMARK 465 LEU A 434 REMARK 465 ALA A 435 REMARK 465 GLN A 436 REMARK 465 VAL A 437 REMARK 465 ARG A 438 REMARK 465 LYS A 439 REMARK 465 GLN A 440 REMARK 465 ILE A 441 REMARK 465 SER A 442 REMARK 465 ARG A 443 REMARK 465 GLU A 444 REMARK 465 GLU A 445 REMARK 465 HIS A 446 REMARK 465 GLU A 447 REMARK 465 ASN A 448 REMARK 465 ARG A 449 REMARK 465 HIS A 450 REMARK 465 ALA A 485 REMARK 465 ALA A 486 REMARK 465 SER A 487 REMARK 465 PHE A 488 REMARK 465 GLN A 489 REMARK 465 ARG A 490 REMARK 465 GLU A 491 REMARK 465 LEU A 492 REMARK 465 ASN A 493 REMARK 465 ASN A 494 REMARK 465 PRO A 495 REMARK 465 LEU A 496 REMARK 465 LYS A 497 REMARK 465 ARG A 498 REMARK 465 MET A 499 REMARK 465 LYS A 500 REMARK 465 GLU A 501 REMARK 465 GLU A 502 REMARK 465 ASP A 503 REMARK 465 ILE A 504 REMARK 465 LEU A 505 REMARK 465 ASP A 506 REMARK 465 LEU A 507 REMARK 465 LEU A 508 REMARK 465 GLU A 509 REMARK 465 GLN A 510 REMARK 465 CYS A 511 REMARK 465 GLU A 512 REMARK 465 ILE A 513 REMARK 465 ASP A 514 REMARK 465 ASP A 515 REMARK 465 GLU A 516 REMARK 465 LYS A 517 REMARK 465 LEU A 518 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 SER A 87 OG REMARK 470 LYS A 107 CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 138 CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 139 OG1 CG2 REMARK 470 GLN A 142 CG CD OE1 NE2 REMARK 470 VAL A 145 CG1 CG2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LEU A 148 CG CD1 CD2 REMARK 470 LYS A 149 CD CE NZ REMARK 470 LYS A 150 NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 PRO A 161 CG CD REMARK 470 SER A 171 OG REMARK 470 ILE A 173 CG1 CG2 CD1 REMARK 470 ASN A 175 CG OD1 ND2 REMARK 470 GLN A 182 CD OE1 NE2 REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 HIS A 184 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 185 CG CD1 CD2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 MET A 197 CE REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 LYS A 217 CD CE NZ REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 231 CD OE1 OE2 REMARK 470 LYS A 232 CE NZ REMARK 470 ILE A 234 CG1 CG2 CD1 REMARK 470 LYS A 275 CD CE NZ REMARK 470 GLU A 326 CD OE1 OE2 REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 342 CE NZ REMARK 470 ARG A 381 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 GLU A 467 CG CD OE1 OE2 REMARK 470 LYS A 468 CD CE NZ REMARK 470 GLN A 478 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 96 34.17 -85.73 REMARK 500 TYR A 125 68.95 -119.78 REMARK 500 ALA A 136 -71.26 -69.08 REMARK 500 GLU A 137 53.40 -90.59 REMARK 500 ARG A 174 -78.43 -141.42 REMARK 500 GLN A 182 33.06 -164.39 REMARK 500 ILE A 186 108.78 -168.13 REMARK 500 LYS A 193 77.58 -117.54 REMARK 500 HIS A 222 44.93 -83.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ANP A 601 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YLR RELATED DB: PDB DBREF 4YLS A 36 518 UNP Q6ZT98 TTLL7_HUMAN 36 518 SEQADV 4YLS GLY A 32 UNP Q6ZT98 EXPRESSION TAG SEQADV 4YLS SER A 33 UNP Q6ZT98 EXPRESSION TAG SEQADV 4YLS PHE A 34 UNP Q6ZT98 EXPRESSION TAG SEQADV 4YLS THR A 35 UNP Q6ZT98 EXPRESSION TAG SEQADV 4YLS GLN A 349 UNP Q6ZT98 GLU 349 ENGINEERED MUTATION SEQRES 1 A 487 GLY SER PHE THR LYS LYS LYS GLY THR ILE THR ALA ASN SEQRES 2 A 487 VAL ALA GLY THR LYS PHE GLU ILE VAL ARG LEU VAL ILE SEQRES 3 A 487 ASP GLU MET GLY PHE MET LYS THR PRO ASP GLU ASP GLU SEQRES 4 A 487 THR SER ASN LEU ILE TRP CYS ASP SER ALA VAL GLN GLN SEQRES 5 A 487 GLU LYS ILE SER GLU LEU GLN ASN TYR GLN ARG ILE ASN SEQRES 6 A 487 HIS PHE PRO GLY MET GLY GLU ILE CYS ARG LYS ASP PHE SEQRES 7 A 487 LEU ALA ARG ASN MET THR LYS MET ILE LYS SER ARG PRO SEQRES 8 A 487 LEU ASP TYR THR PHE VAL PRO ARG THR TRP ILE PHE PRO SEQRES 9 A 487 ALA GLU TYR THR GLN PHE GLN ASN TYR VAL LYS GLU LEU SEQRES 10 A 487 LYS LYS LYS ARG LYS GLN LYS THR PHE ILE VAL LYS PRO SEQRES 11 A 487 ALA ASN GLY ALA MET GLY HIS GLY ILE SER LEU ILE ARG SEQRES 12 A 487 ASN GLY ASP LYS LEU PRO SER GLN ASP HIS LEU ILE VAL SEQRES 13 A 487 GLN GLU TYR ILE GLU LYS PRO PHE LEU MET GLU GLY TYR SEQRES 14 A 487 LYS PHE ASP LEU ARG ILE TYR ILE LEU VAL THR SER CYS SEQRES 15 A 487 ASP PRO LEU LYS ILE PHE LEU TYR HIS ASP GLY LEU VAL SEQRES 16 A 487 ARG MET GLY THR GLU LYS TYR ILE PRO PRO ASN GLU SER SEQRES 17 A 487 ASN LEU THR GLN LEU TYR MET HIS LEU THR ASN TYR SER SEQRES 18 A 487 VAL ASN LYS HIS ASN GLU HIS PHE GLU ARG ASP GLU THR SEQRES 19 A 487 GLU ASN LYS GLY SER LYS ARG SER ILE LYS TRP PHE THR SEQRES 20 A 487 GLU PHE LEU GLN ALA ASN GLN HIS ASP VAL ALA LYS PHE SEQRES 21 A 487 TRP SER ASP ILE SER GLU LEU VAL VAL LYS THR LEU ILE SEQRES 22 A 487 VAL ALA GLU PRO HIS VAL LEU HIS ALA TYR ARG MET CYS SEQRES 23 A 487 ARG PRO GLY GLN PRO PRO GLY SER GLU SER VAL CYS PHE SEQRES 24 A 487 GLU VAL LEU GLY PHE ASP ILE LEU LEU ASP ARG LYS LEU SEQRES 25 A 487 LYS PRO TRP LEU LEU GLN ILE ASN ARG ALA PRO SER PHE SEQRES 26 A 487 GLY THR ASP GLN LYS ILE ASP TYR ASP VAL LYS ARG GLY SEQRES 27 A 487 VAL LEU LEU ASN ALA LEU LYS LEU LEU ASN ILE ARG THR SEQRES 28 A 487 SER ASP LYS ARG ARG ASN LEU ALA LYS GLN LYS ALA GLU SEQRES 29 A 487 ALA GLN ARG ARG LEU TYR GLY GLN ASN SER ILE LYS ARG SEQRES 30 A 487 LEU LEU PRO GLY SER SER ASP TRP GLU GLN GLN ARG HIS SEQRES 31 A 487 GLN LEU GLU ARG ARG LYS GLU GLU LEU LYS GLU ARG LEU SEQRES 32 A 487 ALA GLN VAL ARG LYS GLN ILE SER ARG GLU GLU HIS GLU SEQRES 33 A 487 ASN ARG HIS MET GLY ASN TYR ARG ARG ILE TYR PRO PRO SEQRES 34 A 487 GLU ASP LYS ALA LEU LEU GLU LYS TYR GLU ASN LEU LEU SEQRES 35 A 487 ALA VAL ALA PHE GLN THR PHE LEU SER GLY ARG ALA ALA SEQRES 36 A 487 SER PHE GLN ARG GLU LEU ASN ASN PRO LEU LYS ARG MET SEQRES 37 A 487 LYS GLU GLU ASP ILE LEU ASP LEU LEU GLU GLN CYS GLU SEQRES 38 A 487 ILE ASP ASP GLU LYS LEU HET ANP A 601 27 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 HOH *20(H2 O) HELIX 1 AA1 PHE A 50 GLY A 61 1 12 HELIX 2 AA2 GLN A 82 GLU A 88 1 7 HELIX 3 AA3 MET A 101 ARG A 106 1 6 HELIX 4 AA4 ARG A 106 LYS A 119 1 14 HELIX 5 AA5 GLU A 137 LYS A 151 1 15 HELIX 6 AA6 ILE A 274 ASN A 284 1 11 HELIX 7 AA7 ASP A 287 ARG A 318 1 32 HELIX 8 AA8 GLN A 360 ASN A 379 1 20 HELIX 9 AA9 ASP A 462 ARG A 484 1 23 SHEET 1 AA1 4 MET A 63 LYS A 64 0 SHEET 2 AA1 4 THR A 42 GLY A 47 1 N ALA A 43 O MET A 63 SHEET 3 AA1 4 LEU A 74 CYS A 77 1 O LEU A 74 N ASN A 44 SHEET 4 AA1 4 ARG A 94 ILE A 95 1 O ARG A 94 N ILE A 75 SHEET 1 AA2 4 THR A 131 ILE A 133 0 SHEET 2 AA2 4 ILE A 186 GLU A 189 -1 O VAL A 187 N TRP A 132 SHEET 3 AA2 4 PHE A 157 VAL A 159 -1 N ILE A 158 O GLN A 188 SHEET 4 AA2 4 SER A 171 ILE A 173 -1 O ILE A 173 N PHE A 157 SHEET 1 AA3 5 LEU A 196 MET A 197 0 SHEET 2 AA3 5 TYR A 200 SER A 212 -1 O TYR A 200 N MET A 197 SHEET 3 AA3 5 LYS A 217 MET A 228 -1 O PHE A 219 N LEU A 209 SHEET 4 AA3 5 GLU A 331 LEU A 339 0 SHEET 5 AA3 5 PRO A 345 ASN A 351 -1 O ASN A 351 N GLY A 334 SHEET 1 AA4 4 LYS A 271 SER A 273 0 SHEET 2 AA4 4 LYS A 217 MET A 228 -1 N VAL A 226 O ARG A 272 SHEET 3 AA4 4 TYR A 200 SER A 212 -1 N LEU A 209 O PHE A 219 SHEET 4 AA4 4 TYR A 454 TYR A 458 0 CISPEP 1 PHE A 134 PRO A 135 0 -1.40 CISPEP 2 ASP A 214 PRO A 215 0 -2.22 CISPEP 3 TYR A 458 PRO A 459 0 -0.41 SITE 1 AC1 11 ILE A 158 LYS A 160 ILE A 170 GLN A 188 SITE 2 AC1 11 GLU A 189 TYR A 190 ILE A 191 LYS A 201 SITE 3 AC1 11 ASP A 203 LEU A 338 GLN A 349 CRYST1 79.126 122.324 129.445 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012638 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007725 0.00000