PDB Short entry for 4YS3 HEADER STRUCTURAL PROTEIN/DNA 16-MAR-15 4YS3 TITLE NUCLEOSOME DISASSEMBLY BY RSC AND SWI/SNF IS ENHANCED BY H3 TITLE 2 ACETYLATION NEAR THE NUCLEOSOME DYAD AXIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.2; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: RESIDUES 39-136; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: B, F; COMPND 9 FRAGMENT: RESIDUES 25-103; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HISTONE H2A; COMPND 13 CHAIN: C, G; COMPND 14 FRAGMENT: RESIDUES 15-121; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: HISTONE H2B 1.1; COMPND 18 CHAIN: D, H; COMPND 19 FRAGMENT: RESIDUES 34-126; COMPND 20 SYNONYM: H2B1.1; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: DNA (147-MER); COMPND 24 CHAIN: I; COMPND 25 ENGINEERED: YES; COMPND 26 MOL_ID: 6; COMPND 27 MOLECULE: DNA (147-MER); COMPND 28 CHAIN: J; COMPND 29 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 9 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 10 ORGANISM_TAXID: 8355; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 15 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 16 ORGANISM_TAXID: 8355; SOURCE 17 GENE: HIST1H2AJ, LOC494591; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 22 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 23 ORGANISM_TAXID: 8355; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 MOL_ID: 5; SOURCE 27 SYNTHETIC: YES; SOURCE 28 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 29 ORGANISM_TAXID: 9606; SOURCE 30 MOL_ID: 6; SOURCE 31 SYNTHETIC: YES; SOURCE 32 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 33 ORGANISM_TAXID: 9606 KEYWDS DYAD AXIS, STRUCTURAL PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.L.DECHASSA,K.LUGER,N.CHATTERJEE,J.A.NORTH,M.MANOHAR,R.PRASAD, AUTHOR 2 J.J.OTTESSEN,M.G.POIRIER,B.BARTHOLOMEW REVDAT 6 15-NOV-23 4YS3 1 REMARK REVDAT 5 27-SEP-23 4YS3 1 REMARK REVDAT 4 23-MAR-22 4YS3 1 SEQADV REVDAT 3 20-SEP-17 4YS3 1 JRNL REMARK REVDAT 2 11-NOV-15 4YS3 1 JRNL REVDAT 1 14-OCT-15 4YS3 0 JRNL AUTH N.CHATTERJEE,J.A.NORTH,M.L.DECHASSA,M.MANOHAR,R.PRASAD, JRNL AUTH 2 K.LUGER,J.J.OTTESEN,M.G.POIRIER,B.BARTHOLOMEW JRNL TITL HISTONE ACETYLATION NEAR THE NUCLEOSOME DYAD AXIS ENHANCES JRNL TITL 2 NUCLEOSOME DISASSEMBLY BY RSC AND SWI/SNF. JRNL REF MOL.CELL.BIOL. V. 35 4083 2015 JRNL REFN ESSN 1098-5549 JRNL PMID 26416878 JRNL DOI 10.1128/MCB.00441-15 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 42733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2390 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5984 REMARK 3 NUCLEIC ACID ATOMS : 6021 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.85400 REMARK 3 B22 (A**2) : -6.00900 REMARK 3 B33 (A**2) : -0.84500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 28.40 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, D*TREK 9.7L REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.7L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42733 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.780 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.14 REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1P3L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POSTASSIUM CHLORIDE, MANGANESE REMARK 280 CHLORIDE, CACODYLATE, PH 6.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.61500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.61500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 55570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -368.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR G 1120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP E 677 O HOH E 801 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 826 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 479 117.95 -174.74 REMARK 500 ASP A 481 98.46 38.96 REMARK 500 ARG A 534 -110.67 -119.62 REMARK 500 THR B 96 135.89 -31.58 REMARK 500 PHE B 100 42.01 -145.14 REMARK 500 PRO C 826 95.06 -65.43 REMARK 500 ASN C 838 64.51 60.69 REMARK 500 GLN C 912 121.68 -36.30 REMARK 500 VAL C 914 -4.22 -47.68 REMARK 500 LYS C 918 -146.25 25.17 REMARK 500 TYR D1280 -5.01 -55.40 REMARK 500 LYS D1282 19.85 52.18 REMARK 500 GLU D1310 -36.58 -38.54 REMARK 500 SER D1320 49.59 -77.08 REMARK 500 ALA D1321 96.81 -165.78 REMARK 500 PRO E 643 108.89 -56.52 REMARK 500 VAL E 717 12.90 -145.54 REMARK 500 ARG E 734 143.24 -174.43 REMARK 500 PHE F 300 42.70 -143.30 REMARK 500 PRO G1026 92.73 -64.44 REMARK 500 LYS G1036 -6.08 -57.99 REMARK 500 ASN G1038 63.49 61.81 REMARK 500 ASP G1072 26.90 -65.08 REMARK 500 PRO G1117 130.62 -30.65 REMARK 500 SER H1433 136.00 -173.36 REMARK 500 LYS H1482 70.72 50.38 REMARK 500 ALA H1521 117.21 179.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG I 46 0.07 SIDE CHAIN REMARK 500 DG I 68 0.07 SIDE CHAIN REMARK 500 DA I 134 0.07 SIDE CHAIN REMARK 500 DG I 145 0.05 SIDE CHAIN REMARK 500 DA J 148 0.05 SIDE CHAIN REMARK 500 DG J 193 0.05 SIDE CHAIN REMARK 500 DG J 215 0.08 SIDE CHAIN REMARK 500 DA J 225 0.06 SIDE CHAIN REMARK 500 DC J 227 0.06 SIDE CHAIN REMARK 500 DA J 247 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XZQ RELATED DB: PDB DBREF 4YS3 A 438 535 UNP P84233 H32_XENLA 39 136 DBREF 4YS3 B 24 102 UNP P62799 H4_XENLA 25 103 DBREF 4YS3 C 814 920 UNP Q6AZJ8 Q6AZJ8_XENLA 15 121 DBREF 4YS3 D 1230 1322 UNP P02281 H2B11_XENLA 34 126 DBREF 4YS3 E 638 735 UNP P84233 H32_XENLA 39 136 DBREF 4YS3 F 224 302 UNP P62799 H4_XENLA 25 103 DBREF 4YS3 G 1014 1120 UNP Q6AZJ8 Q6AZJ8_XENLA 15 121 DBREF 4YS3 H 1430 1522 UNP P02281 H2B11_XENLA 34 126 DBREF 4YS3 I 1 147 PDB 4YS3 4YS3 1 147 DBREF 4YS3 J 148 294 PDB 4YS3 4YS3 148 294 SEQADV 4YS3 ALA A 502 UNP P84233 GLY 103 ENGINEERED MUTATION SEQADV 4YS3 ALA E 702 UNP P84233 GLY 103 ENGINEERED MUTATION SEQRES 1 A 98 PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU SEQRES 2 A 98 ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG SEQRES 3 A 98 LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN SEQRES 4 A 98 ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL SEQRES 5 A 98 MET ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL ALA SEQRES 6 A 98 LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA ALY SEQRES 7 A 98 ARG VAL THR ILE MET PRO ALY ASP ILE GLN LEU ALA ARG SEQRES 8 A 98 ARG ILE ARG GLY GLU ARG ALA SEQRES 1 B 79 ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG SEQRES 2 B 79 LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU SEQRES 3 B 79 ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU SEQRES 4 B 79 GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS SEQRES 5 B 79 ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR SEQRES 6 B 79 ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY SEQRES 7 B 79 GLY SEQRES 1 C 107 ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE PRO SEQRES 2 C 107 VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 3 C 107 ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 4 C 107 ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU LEU SEQRES 5 C 107 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 6 C 107 ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP GLU SEQRES 7 C 107 GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA GLN SEQRES 8 C 107 GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU PRO SEQRES 9 C 107 LYS LYS THR SEQRES 1 D 93 ARG LYS GLU SER TYR ALA ILE TYR VAL TYR LYS VAL LEU SEQRES 2 D 93 LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER LYS ALA SEQRES 3 D 93 MET SER ILE MET ASN SER PHE VAL ASN ASP VAL PHE GLU SEQRES 4 D 93 ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS TYR ASN SEQRES 5 D 93 LYS ARG SER THR ILE THR SER ARG GLU ILE GLN THR ALA SEQRES 6 D 93 VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS HIS ALA SEQRES 7 D 93 VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR THR SER SEQRES 8 D 93 ALA LYS SEQRES 1 E 98 PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU SEQRES 2 E 98 ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG SEQRES 3 E 98 LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN SEQRES 4 E 98 ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL SEQRES 5 E 98 MET ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL ALA SEQRES 6 E 98 LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA ALY SEQRES 7 E 98 ARG VAL THR ILE MET PRO ALY ASP ILE GLN LEU ALA ARG SEQRES 8 E 98 ARG ILE ARG GLY GLU ARG ALA SEQRES 1 F 79 ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG SEQRES 2 F 79 LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU SEQRES 3 F 79 ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU SEQRES 4 F 79 GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS SEQRES 5 F 79 ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR SEQRES 6 F 79 ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY SEQRES 7 F 79 GLY SEQRES 1 G 107 ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE PRO SEQRES 2 G 107 VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 3 G 107 ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 4 G 107 ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU LEU SEQRES 5 G 107 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 6 G 107 ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP GLU SEQRES 7 G 107 GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA GLN SEQRES 8 G 107 GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU PRO SEQRES 9 G 107 LYS LYS THR SEQRES 1 H 93 ARG LYS GLU SER TYR ALA ILE TYR VAL TYR LYS VAL LEU SEQRES 2 H 93 LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER LYS ALA SEQRES 3 H 93 MET SER ILE MET ASN SER PHE VAL ASN ASP VAL PHE GLU SEQRES 4 H 93 ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS TYR ASN SEQRES 5 H 93 LYS ARG SER THR ILE THR SER ARG GLU ILE GLN THR ALA SEQRES 6 H 93 VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS HIS ALA SEQRES 7 H 93 VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR THR SER SEQRES 8 H 93 ALA LYS SEQRES 1 I 147 DA DT DC DA DA DT DA DT DC DC DA DC DC SEQRES 2 I 147 DT DG DC DA DG DA DT DA DC DT DA DC DC SEQRES 3 I 147 DA DA DA DA DG DT DG DT DA DT DT DT DG SEQRES 4 I 147 DG DA DA DA DC DT DG DC DT DC DC DA DT SEQRES 5 I 147 DC DA DA DA DA DG DG DC DA DT DG DT DT SEQRES 6 I 147 DC DA DG DC DT DG DG DA DA DT DC DC DA SEQRES 7 I 147 DG DC DT DG DA DA DC DA DT DG DC DC DT SEQRES 8 I 147 DT DT DT DG DA DT DG DG DA DG DC DA DG SEQRES 9 I 147 DT DT DT DC DC DA DA DA DT DA DC DA DC SEQRES 10 I 147 DT DT DT DT DG DG DT DA DG DT DA DT DC SEQRES 11 I 147 DT DG DC DA DG DG DT DG DG DA DT DA DT SEQRES 12 I 147 DT DG DA DT SEQRES 1 J 147 DA DT DC DA DA DT DA DT DC DC DA DC DC SEQRES 2 J 147 DT DG DC DA DG DA DT DA DC DT DA DC DC SEQRES 3 J 147 DA DA DA DA DG DT DG DT DA DT DT DT DG SEQRES 4 J 147 DG DA DA DA DC DT DG DC DT DC DC DA DT SEQRES 5 J 147 DC DA DA DA DA DG DG DC DA DT DG DT DT SEQRES 6 J 147 DC DA DG DC DT DG DG DA DT DT DC DC DA SEQRES 7 J 147 DG DC DT DG DA DA DC DA DT DG DC DC DT SEQRES 8 J 147 DT DT DT DG DA DT DG DG DA DG DC DA DG SEQRES 9 J 147 DT DT DT DC DC DA DA DA DT DA DC DA DC SEQRES 10 J 147 DT DT DT DT DG DG DT DA DG DT DA DT DC SEQRES 11 J 147 DT DG DC DA DG DG DT DG DG DA DT DA DT SEQRES 12 J 147 DT DG DA DT MODRES 4YS3 ALY A 515 LYS MODIFIED RESIDUE MODRES 4YS3 ALY A 522 LYS MODIFIED RESIDUE MODRES 4YS3 ALY E 715 LYS MODIFIED RESIDUE MODRES 4YS3 ALY E 722 LYS MODIFIED RESIDUE HET ALY A 515 12 HET ALY A 522 12 HET ALY E 715 12 HET ALY E 722 12 HETNAM ALY N(6)-ACETYLLYSINE FORMUL 1 ALY 4(C8 H16 N2 O3) FORMUL 11 HOH *53(H2 O) HELIX 1 AA1 GLY A 444 GLN A 455 1 12 HELIX 2 AA2 ARG A 463 ASP A 477 1 15 HELIX 3 AA3 GLN A 485 ALA A 514 1 30 HELIX 4 AA4 MET A 520 ARG A 531 1 12 HELIX 5 AA5 ASN B 25 ILE B 29 5 5 HELIX 6 AA6 THR B 30 GLY B 41 1 12 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 GLN B 93 1 12 HELIX 9 AA9 THR C 816 GLY C 822 1 7 HELIX 10 AB1 PRO C 826 ASN C 838 1 13 HELIX 11 AB2 ALA C 845 ASP C 872 1 28 HELIX 12 AB3 ILE C 879 ASP C 890 1 12 HELIX 13 AB4 ASP C 890 LEU C 897 1 8 HELIX 14 AB5 GLN C 912 LEU C 916 5 5 HELIX 15 AB6 TYR D 1234 HIS D 1246 1 13 HELIX 16 AB7 SER D 1252 TYR D 1280 1 29 HELIX 17 AB8 THR D 1287 LEU D 1299 1 13 HELIX 18 AB9 PRO D 1300 SER D 1320 1 21 HELIX 19 AC1 GLY E 644 LYS E 656 1 13 HELIX 20 AC2 ARG E 663 ASP E 677 1 15 HELIX 21 AC3 GLN E 685 ALA E 714 1 30 HELIX 22 AC4 MET E 720 ARG E 731 1 12 HELIX 23 AC5 ASP F 224 ILE F 229 5 6 HELIX 24 AC6 THR F 230 GLY F 241 1 12 HELIX 25 AC7 LEU F 249 ALA F 276 1 28 HELIX 26 AC8 THR F 282 GLN F 293 1 12 HELIX 27 AC9 THR G 1016 ALA G 1021 1 6 HELIX 28 AD1 PRO G 1026 GLY G 1037 1 12 HELIX 29 AD2 ALA G 1045 ASP G 1072 1 28 HELIX 30 AD3 ILE G 1079 ASN G 1089 1 11 HELIX 31 AD4 ASP G 1090 LEU G 1097 1 8 HELIX 32 AD5 GLN G 1112 LEU G 1116 5 5 HELIX 33 AD6 TYR H 1434 HIS H 1446 1 13 HELIX 34 AD7 SER H 1452 ASN H 1481 1 30 HELIX 35 AD8 THR H 1487 LEU H 1499 1 13 HELIX 36 AD9 PRO H 1500 SER H 1520 1 21 SHEET 1 AA1 2 ARG A 483 PHE A 484 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 483 SHEET 1 AA2 2 THR A 518 ILE A 519 0 SHEET 2 AA2 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 519 SHEET 1 AA3 2 LEU B 97 TYR B 98 0 SHEET 2 AA3 2 THR G1101 ILE G1102 1 O THR G1101 N TYR B 98 SHEET 1 AA4 2 ARG C 842 VAL C 843 0 SHEET 2 AA4 2 THR D1285 ILE D1286 1 O ILE D1286 N ARG C 842 SHEET 1 AA5 2 ARG C 877 ILE C 878 0 SHEET 2 AA5 2 GLY D1250 ILE D1251 1 O GLY D1250 N ILE C 878 SHEET 1 AA6 2 THR C 901 ILE C 902 0 SHEET 2 AA6 2 LEU F 297 TYR F 298 1 O TYR F 298 N THR C 901 SHEET 1 AA7 2 ARG E 683 PHE E 684 0 SHEET 2 AA7 2 THR F 280 VAL F 281 1 O VAL F 281 N ARG E 683 SHEET 1 AA8 2 THR E 718 ILE E 719 0 SHEET 2 AA8 2 ARG F 245 ILE F 246 1 O ARG F 245 N ILE E 719 SHEET 1 AA9 2 ARG G1042 VAL G1043 0 SHEET 2 AA9 2 THR H1485 ILE H1486 1 O ILE H1486 N ARG G1042 SHEET 1 AB1 2 ARG G1077 ILE G1078 0 SHEET 2 AB1 2 GLY H1450 ILE H1451 1 O GLY H1450 N ILE G1078 LINK C ALA A 514 N ALY A 515 1555 1555 1.33 LINK C ALY A 515 N ARG A 516 1555 1555 1.33 LINK C PRO A 521 N ALY A 522 1555 1555 1.32 LINK C ALY A 522 N ASP A 523 1555 1555 1.34 LINK C ALA E 714 N ALY E 715 1555 1555 1.33 LINK C ALY E 715 N ARG E 716 1555 1555 1.34 LINK C PRO E 721 N ALY E 722 1555 1555 1.33 LINK C ALY E 722 N ASP E 723 1555 1555 1.33 CRYST1 105.510 109.620 181.230 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009478 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005518 0.00000