PDB Short entry for 4YVD HEADER RNA BINDING PROTEIN 19-MAR-15 4YVD TITLE CRYTSAL STRUCTURE OF HUMAN PLEIOTROPIC REGULATOR 1 (PRL1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLEIOTROPIC REGULATOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 141-514; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLRG1; SOURCE 6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS WD40 REPEAT, MRNA PROCESSING, MRNA SPLICING, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,H.ZENG,C.XU,W.TEMPEL,Y.LI,H.HE,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,P.J.BROWN,J.MIN,H.WU,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 1 15-APR-15 4YVD 0 JRNL AUTH H.ZENG,A.DONG,C.XU,W.TEMPEL,Y.LI,H.HE,C.BOUNTRA, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,P.J.BROWN,J.MIN,H.WU, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYTSAL STRUCTURE OF HUMAN PLEIOTROPIC REGULATOR 1 (PRL1). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 29532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.070 REMARK 3 FREE R VALUE TEST SET COUNT : 908 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.32 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2301 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2345 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2243 REMARK 3 BIN R VALUE (WORKING SET) : 0.2349 REMARK 3 BIN FREE R VALUE : 0.2193 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.52 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 58 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2286 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.69360 REMARK 3 B22 (A**2) : 2.93100 REMARK 3 B33 (A**2) : -8.62470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.291 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.117 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.111 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.114 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.109 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2412 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3300 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 808 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 43 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 367 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2412 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 325 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2820 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.64 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.35 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|190 - A|492 } REMARK 3 ORIGIN FOR THE GROUP (A): 22.8843 7.0762 14.0994 REMARK 3 T TENSOR REMARK 3 T11: -0.1361 T22: -0.0760 REMARK 3 T33: -0.0677 T12: 0.0560 REMARK 3 T13: -0.0025 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 4.3082 L22: 1.4128 REMARK 3 L33: 0.7447 L12: -1.7831 REMARK 3 L13: -1.0435 L23: 0.3263 REMARK 3 S TENSOR REMARK 3 S11: 0.3285 S12: 0.7256 S13: -0.0516 REMARK 3 S21: -0.1398 S22: -0.3131 S23: 0.0851 REMARK 3 S31: -0.1309 S32: -0.2393 S33: -0.0154 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : CCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.87400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: PDB ENTRY 2GNQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M CACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 79.16500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.09250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 79.16500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 17.09250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 34.18500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 UNK UNX A 611 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 141 REMARK 465 ALA A 142 REMARK 465 PRO A 143 REMARK 465 SER A 144 REMARK 465 GLY A 145 REMARK 465 SER A 146 REMARK 465 GLU A 147 REMARK 465 TYR A 148 REMARK 465 ARG A 149 REMARK 465 HIS A 150 REMARK 465 PRO A 151 REMARK 465 GLY A 152 REMARK 465 ALA A 153 REMARK 465 SER A 154 REMARK 465 ASP A 155 REMARK 465 ARG A 156 REMARK 465 PRO A 157 REMARK 465 GLN A 158 REMARK 465 PRO A 159 REMARK 465 THR A 160 REMARK 465 ALA A 161 REMARK 465 MET A 162 REMARK 465 ASN A 163 REMARK 465 SER A 164 REMARK 465 ILE A 165 REMARK 465 VAL A 166 REMARK 465 MET A 167 REMARK 465 GLU A 168 REMARK 465 THR A 169 REMARK 465 GLY A 170 REMARK 465 ASN A 171 REMARK 465 THR A 172 REMARK 465 LYS A 173 REMARK 465 ASN A 174 REMARK 465 SER A 175 REMARK 465 ALA A 176 REMARK 465 LEU A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 LYS A 180 REMARK 465 LYS A 181 REMARK 465 ALA A 182 REMARK 465 PRO A 183 REMARK 465 THR A 184 REMARK 465 MET A 185 REMARK 465 PRO A 186 REMARK 465 LYS A 187 REMARK 465 PRO A 188 REMARK 465 GLN A 189 REMARK 465 ALA A 453 REMARK 465 VAL A 454 REMARK 465 GLN A 455 REMARK 465 PRO A 456 REMARK 465 GLY A 457 REMARK 465 SER A 458 REMARK 465 LEU A 459 REMARK 465 ASP A 460 REMARK 465 SER A 461 REMARK 465 ASP A 493 REMARK 465 THR A 494 REMARK 465 ALA A 495 REMARK 465 THR A 496 REMARK 465 GLU A 497 REMARK 465 GLU A 498 REMARK 465 THR A 499 REMARK 465 HIS A 500 REMARK 465 PRO A 501 REMARK 465 VAL A 502 REMARK 465 SER A 503 REMARK 465 TRP A 504 REMARK 465 LYS A 505 REMARK 465 PRO A 506 REMARK 465 GLU A 507 REMARK 465 ILE A 508 REMARK 465 ILE A 509 REMARK 465 LYS A 510 REMARK 465 ARG A 511 REMARK 465 LYS A 512 REMARK 465 ARG A 513 REMARK 465 PHE A 514 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 TYR A 197 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 198 NH1 NH2 REMARK 470 SER A 201 CB OG REMARK 470 SER A 235 OG REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 239 NZ REMARK 470 GLU A 342 CD OE1 OE2 REMARK 470 LYS A 372 CE NZ REMARK 470 ASN A 413 CG OD1 ND2 REMARK 470 HIS A 451 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 463 OG REMARK 470 ARG A 490 NE CZ NH1 NH2 REMARK 470 ASP A 492 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 239 -61.27 -92.60 REMARK 500 LYS A 268 -1.45 73.06 REMARK 500 ALA A 290 132.62 -36.62 REMARK 500 ILE A 406 -63.03 -100.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 250 O REMARK 620 2 TYR A 292 O 78.0 REMARK 620 3 HOH A 784 O 78.5 146.5 REMARK 620 4 HOH A 738 O 61.2 71.9 75.9 REMARK 620 5 HOH A 782 O 174.1 97.5 103.9 113.8 REMARK 620 6 HOH A 825 O 98.6 107.3 99.6 159.8 86.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 606 DBREF 4YVD A 141 514 UNP O43660 PLRG1_HUMAN 141 514 SEQRES 1 A 374 THR ALA PRO SER GLY SER GLU TYR ARG HIS PRO GLY ALA SEQRES 2 A 374 SER ASP ARG PRO GLN PRO THR ALA MET ASN SER ILE VAL SEQRES 3 A 374 MET GLU THR GLY ASN THR LYS ASN SER ALA LEU MET ALA SEQRES 4 A 374 LYS LYS ALA PRO THR MET PRO LYS PRO GLN TRP HIS PRO SEQRES 5 A 374 PRO TRP LYS LEU TYR ARG VAL ILE SER GLY HIS LEU GLY SEQRES 6 A 374 TRP VAL ARG CYS ILE ALA VAL GLU PRO GLY ASN GLN TRP SEQRES 7 A 374 PHE VAL THR GLY SER ALA ASP ARG THR ILE LYS ILE TRP SEQRES 8 A 374 ASP LEU ALA SER GLY LYS LEU LYS LEU SER LEU THR GLY SEQRES 9 A 374 HIS ILE SER THR VAL ARG GLY VAL ILE VAL SER THR ARG SEQRES 10 A 374 SER PRO TYR LEU PHE SER CYS GLY GLU ASP LYS GLN VAL SEQRES 11 A 374 LYS CYS TRP ASP LEU GLU TYR ASN LYS VAL ILE ARG HIS SEQRES 12 A 374 TYR HIS GLY HIS LEU SER ALA VAL TYR GLY LEU ASP LEU SEQRES 13 A 374 HIS PRO THR ILE ASP VAL LEU VAL THR CYS SER ARG ASP SEQRES 14 A 374 SER THR ALA ARG ILE TRP ASP VAL ARG THR LYS ALA SER SEQRES 15 A 374 VAL HIS THR LEU SER GLY HIS THR ASN ALA VAL ALA THR SEQRES 16 A 374 VAL ARG CYS GLN ALA ALA GLU PRO GLN ILE ILE THR GLY SEQRES 17 A 374 SER HIS ASP THR THR ILE ARG LEU TRP ASP LEU VAL ALA SEQRES 18 A 374 GLY LYS THR ARG VAL THR LEU THR ASN HIS LYS LYS SER SEQRES 19 A 374 VAL ARG ALA VAL VAL LEU HIS PRO ARG HIS TYR THR PHE SEQRES 20 A 374 ALA SER GLY SER PRO ASP ASN ILE LYS GLN TRP LYS PHE SEQRES 21 A 374 PRO ASP GLY SER PHE ILE GLN ASN LEU SER GLY HIS ASN SEQRES 22 A 374 ALA ILE ILE ASN THR LEU THR VAL ASN SER ASP GLY VAL SEQRES 23 A 374 LEU VAL SER GLY ALA ASP ASN GLY THR MET HIS LEU TRP SEQRES 24 A 374 ASP TRP ARG THR GLY TYR ASN PHE GLN ARG VAL HIS ALA SEQRES 25 A 374 ALA VAL GLN PRO GLY SER LEU ASP SER GLU SER GLY ILE SEQRES 26 A 374 PHE ALA CYS ALA PHE ASP GLN SER GLU SER ARG LEU LEU SEQRES 27 A 374 THR ALA GLU ALA ASP LYS THR ILE LYS VAL TYR ARG GLU SEQRES 28 A 374 ASP ASP THR ALA THR GLU GLU THR HIS PRO VAL SER TRP SEQRES 29 A 374 LYS PRO GLU ILE ILE LYS ARG LYS ARG PHE HET NA A 601 1 HET CL A 602 1 HET CL A 603 1 HET CL A 604 1 HET CL A 605 1 HET CL A 606 1 HET UNX A 607 1 HET UNX A 608 1 HET UNX A 609 1 HET UNX A 610 1 HET UNX A 611 1 HET UNX A 612 1 HET UNX A 613 1 HET UNX A 614 1 HET UNX A 615 1 HET UNX A 616 1 HET UNX A 617 1 HET UNX A 618 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 NA NA 1+ FORMUL 3 CL 5(CL 1-) FORMUL 8 UNX 12(X) FORMUL 20 HOH *146(H2 O) SHEET 1 AA1 4 TRP A 194 ILE A 200 0 SHEET 2 AA1 4 ILE A 486 GLU A 491 -1 O ILE A 486 N ILE A 200 SHEET 3 AA1 4 ARG A 476 GLU A 481 -1 N LEU A 477 O TYR A 489 SHEET 4 AA1 4 ILE A 465 PHE A 470 -1 N ALA A 469 O LEU A 478 SHEET 1 AA2 4 VAL A 207 VAL A 212 0 SHEET 2 AA2 4 TRP A 218 SER A 223 -1 O VAL A 220 N ALA A 211 SHEET 3 AA2 4 ILE A 228 ASP A 232 -1 O TRP A 231 N PHE A 219 SHEET 4 AA2 4 LEU A 238 LEU A 242 -1 O LEU A 240 N ILE A 230 SHEET 1 AA3 4 VAL A 249 VAL A 254 0 SHEET 2 AA3 4 TYR A 260 GLY A 265 -1 O PHE A 262 N ILE A 253 SHEET 3 AA3 4 VAL A 270 ASP A 274 -1 O TRP A 273 N LEU A 261 SHEET 4 AA3 4 LYS A 279 HIS A 283 -1 O ILE A 281 N CYS A 272 SHEET 1 AA4 4 VAL A 291 LEU A 296 0 SHEET 2 AA4 4 VAL A 302 SER A 307 -1 O VAL A 304 N ASP A 295 SHEET 3 AA4 4 THR A 311 ASP A 316 -1 O TRP A 315 N LEU A 303 SHEET 4 AA4 4 SER A 322 SER A 327 -1 O LEU A 326 N ALA A 312 SHEET 1 AA5 4 VAL A 333 CYS A 338 0 SHEET 2 AA5 4 ILE A 345 SER A 349 -1 O ILE A 346 N ARG A 337 SHEET 3 AA5 4 ILE A 354 ASP A 358 -1 O TRP A 357 N ILE A 345 SHEET 4 AA5 4 LYS A 363 LEU A 368 -1 O ARG A 365 N LEU A 356 SHEET 1 AA6 4 ALA A 377 LEU A 380 0 SHEET 2 AA6 4 THR A 386 GLY A 390 -1 O ALA A 388 N VAL A 379 SHEET 3 AA6 4 ILE A 395 LYS A 399 -1 O LYS A 396 N SER A 389 SHEET 4 AA6 4 SER A 404 LEU A 409 -1 O LEU A 409 N ILE A 395 SHEET 1 AA7 4 ILE A 416 VAL A 421 0 SHEET 2 AA7 4 VAL A 426 ALA A 431 -1 O VAL A 428 N THR A 420 SHEET 3 AA7 4 MET A 436 ASP A 440 -1 O TRP A 439 N LEU A 427 SHEET 4 AA7 4 ASN A 446 VAL A 450 -1 O VAL A 450 N MET A 436 LINK O ARG A 250 NA NA A 601 1555 1555 2.81 LINK O TYR A 292 NA NA A 601 1555 1555 2.66 LINK NA NA A 601 O HOH A 784 1555 1555 2.68 LINK NA NA A 601 O BHOH A 738 1555 1555 3.01 LINK NA NA A 601 O HOH A 782 1555 1555 2.72 LINK NA NA A 601 O HOH A 825 1555 1555 3.00 CISPEP 1 GLU A 342 PRO A 343 0 -1.41 CISPEP 2 PHE A 400 PRO A 401 0 5.04 SITE 1 AC1 7 ARG A 250 TYR A 292 GLY A 293 HOH A 738 SITE 2 AC1 7 HOH A 782 HOH A 784 HOH A 825 SITE 1 AC2 3 GLN A 407 ASN A 408 HOH A 814 SITE 1 AC3 5 ARG A 282 HIS A 283 LYS A 320 HOH A 722 SITE 2 AC3 5 HOH A 836 SITE 1 AC4 5 GLN A 339 ALA A 340 HIS A 384 HOH A 821 SITE 2 AC4 5 HOH A 826 SITE 1 AC5 3 TRP A 190 GLN A 448 ARG A 449 SITE 1 AC6 4 LYS A 399 ASP A 402 GLY A 403 SER A 404 CRYST1 158.330 34.185 48.818 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006316 0.000000 0.000000 0.00000 SCALE2 0.000000 0.029253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020484 0.00000