PDB Short entry for 4YZC HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-MAR-15 4YZC TITLE CRYSTAL STRUCTURE OF PIRE1ALPHA IN COMPLEX WITH STAUROSPORINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 562-963; COMPND 5 SYNONYM: ENDOPLASMIC RETICULUM-TO-NUCLEUS SIGNALING 1,INOSITOL- COMPND 6 REQUIRING PROTEIN 1,HIRE1P,IRE1-ALPHA,IRE1A; COMPND 7 EC: 2.7.11.1,3.1.26.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERN1, IRE1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS IRE1, INHIBITOR, STAUROSPORINE, COMPLEX, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.O.CONCHA REVDAT 2 27-SEP-23 4YZC 1 JRNL REMARK REVDAT 1 11-NOV-15 4YZC 0 JRNL AUTH N.O.CONCHA,A.SMALLWOOD,W.BONNETTE,R.TOTORITIS,G.ZHANG, JRNL AUTH 2 K.FEDEROWICZ,J.YANG,H.QI,S.CHEN,N.CAMPOBASSO,A.E.CHOUDHRY, JRNL AUTH 3 L.E.SHUSTER,K.A.EVANS,J.RALPH,S.SWEITZER,D.A.HEERDING, JRNL AUTH 4 C.A.BUSER,D.S.SU,M.P.DEYOUNG JRNL TITL LONG-RANGE INHIBITOR-INDUCED CONFORMATIONAL REGULATION OF JRNL TITL 2 HUMAN IRE1 ALPHA ENDORIBONUCLEASE ACTIVITY. JRNL REF MOL.PHARMACOL. V. 88 1011 2015 JRNL REFN ESSN 1521-0111 JRNL PMID 26438213 JRNL DOI 10.1124/MOL.115.100917 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 41901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2298 - 6.1436 1.00 2918 136 0.2080 0.2089 REMARK 3 2 6.1436 - 4.8791 1.00 2783 138 0.2193 0.2575 REMARK 3 3 4.8791 - 4.2631 1.00 2759 140 0.1904 0.2361 REMARK 3 4 4.2631 - 3.8737 1.00 2711 140 0.2214 0.2402 REMARK 3 5 3.8737 - 3.5962 1.00 2697 139 0.2405 0.3229 REMARK 3 6 3.5962 - 3.3843 1.00 2707 144 0.2557 0.3206 REMARK 3 7 3.3843 - 3.2149 1.00 2691 144 0.2738 0.3269 REMARK 3 8 3.2149 - 3.0750 1.00 2646 124 0.2634 0.2958 REMARK 3 9 3.0750 - 2.9567 1.00 2695 156 0.2881 0.3478 REMARK 3 10 2.9567 - 2.8547 1.00 2653 139 0.2799 0.3224 REMARK 3 11 2.8547 - 2.7654 0.99 2636 129 0.3034 0.3427 REMARK 3 12 2.7654 - 2.6864 0.97 2594 153 0.3130 0.3469 REMARK 3 13 2.6864 - 2.6157 0.97 2548 148 0.3096 0.3636 REMARK 3 14 2.6157 - 2.5519 0.94 2478 154 0.3200 0.3892 REMARK 3 15 2.5519 - 2.4939 0.86 2269 132 0.3310 0.3652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6270 REMARK 3 ANGLE : 0.648 8519 REMARK 3 CHIRALITY : 0.036 926 REMARK 3 PLANARITY : 0.004 1086 REMARK 3 DIHEDRAL : 12.676 2274 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.494 REMARK 200 RESOLUTION RANGE LOW (A) : 40.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.09722 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.13430 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3P23 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE COMPLEX OF PIRE1A (547-977) WITH REMARK 280 STAUROSPORINE WAS PREPARED BY MIXING THE PROTEIN WITH 0.5 MM REMARK 280 STAUROSPORINE AND INCUBATED OVERNIGHT ON ICE. THE CRYSTALS WERE REMARK 280 GROWN AT 20C BY VAPOR DIFFUSION IN SITTING DROP CONTAINING 2 UL REMARK 280 OF PROTEIN (13 MG/ML IN 50 MM HEPES, PH 7.5, 200 MM NACL, 5 MM REMARK 280 DTT, 1 MM EDTA) AND 2UL RESERVOIR SOLUTION CONTAINING PEG 300 REMARK 280 (30%-40%), 100 MM HEPES PH 7.5, 200 MM KCL. SMALL HEXAGONAL REMARK 280 PLATES APPEARED OVER 5-10 DAYS AND REACHED FULL SIZE (0.05 X REMARK 280 0.75 X 0.15 MM) IN ~20 DAYS. THE CRYSTALS WERE FLASH-FROZEN IN REMARK 280 LIQUID N2 DIRECTLY FROM THE CRYSTALLIZATION DROP. ALL REMARK 280 DIFFRACTION DATA WAS COLLECTED AT THE ADVANCED PHOTON SOURCE, REMARK 280 ARGONNE NATIONAL LABORATORIES, LIFE SCIENCES CAT, SECTOR 21, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.66850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.82150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.82150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.66850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 77.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 604 REMARK 465 CYS A 605 REMARK 465 PHE A 606 REMARK 465 SER A 607 REMARK 465 PHE A 608 REMARK 465 ALA A 609 REMARK 465 LYS A 656 REMARK 465 ASP A 657 REMARK 465 PHE A 658 REMARK 465 ALA A 659 REMARK 465 HIS A 660 REMARK 465 LEU A 661 REMARK 465 GLY A 662 REMARK 465 LEU A 663 REMARK 465 GLY A 721 REMARK 465 GLU A 745 REMARK 465 ASP A 746 REMARK 465 GLU A 964 REMARK 465 PRO A 965 REMARK 465 PRO A 966 REMARK 465 GLU B 604 REMARK 465 CYS B 605 REMARK 465 PHE B 606 REMARK 465 SER B 607 REMARK 465 PHE B 608 REMARK 465 ALA B 609 REMARK 465 LYS B 656 REMARK 465 ASP B 657 REMARK 465 PHE B 658 REMARK 465 ALA B 659 REMARK 465 HIS B 660 REMARK 465 LEU B 661 REMARK 465 GLY B 662 REMARK 465 LEU B 663 REMARK 465 VAL B 720 REMARK 465 GLY B 721 REMARK 465 GLU B 745 REMARK 465 ASP B 746 REMARK 465 GLU B 964 REMARK 465 PRO B 965 REMARK 465 PRO B 966 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 594 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 612 CG CD OE1 OE2 REMARK 470 GLN A 614 CG CD OE1 NE2 REMARK 470 GLU A 621 CG CD OE1 OE2 REMARK 470 VAL A 720 CG1 CG2 REMARK 470 HIS A 723 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 728 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 747 SG REMARK 470 LYS A 748 CG CD CE NZ REMARK 470 GLU A 749 CG CD OE1 OE2 REMARK 470 LYS A 777 CG CD CE NZ REMARK 470 LEU A 779 CG CD1 CD2 REMARK 470 GLN A 780 CG CD OE1 NE2 REMARK 470 LYS A 811 CE NZ REMARK 470 LYS A 851 CG CD CE NZ REMARK 470 VAL A 859 CG1 CG2 REMARK 470 LYS A 860 CG CD CE NZ REMARK 470 ARG A 867 CG CD NE CZ NH1 NH2 REMARK 470 THR A 879 CG2 REMARK 470 LEU A 886 CG CD1 CD2 REMARK 470 PHE A 889 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 890 CG CD NE CZ NH1 NH2 REMARK 470 THR A 891 OG1 CG2 REMARK 470 LYS A 893 CD CE NZ REMARK 470 GLU A 917 CG CD OE1 OE2 REMARK 470 HIS A 963 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 574 CE NZ REMARK 470 LEU B 602 CG CD1 CD2 REMARK 470 ARG B 611 CZ NH1 NH2 REMARK 470 GLU B 612 CG CD OE1 OE2 REMARK 470 GLU B 621 CG CD OE1 OE2 REMARK 470 LYS B 633 CG CD CE NZ REMARK 470 ARG B 635 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 636 CG CD OE1 NE2 REMARK 470 LYS B 704 CG CD CE NZ REMARK 470 HIS B 723 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 728 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 731 CG1 CG2 REMARK 470 LEU B 743 CG CD1 CD2 REMARK 470 LYS B 748 CG CD CE NZ REMARK 470 GLU B 749 CG CD OE1 OE2 REMARK 470 LYS B 777 CG CD CE NZ REMARK 470 LEU B 779 CG CD1 CD2 REMARK 470 GLN B 780 CG CD OE1 NE2 REMARK 470 LEU B 786 CG CD1 CD2 REMARK 470 LYS B 851 CG CD CE NZ REMARK 470 LYS B 860 CG CD CE NZ REMARK 470 ARG B 867 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 880 CG1 CG2 REMARK 470 LYS B 888 CG CD CE NZ REMARK 470 PHE B 889 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 890 CG CD NE CZ NH1 NH2 REMARK 470 THR B 891 OG1 CG2 REMARK 470 ARG B 912 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 913 CG CD OE1 OE2 REMARK 470 GLU B 917 CG CD OE1 OE2 REMARK 470 LEU B 922 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 843 HZ2 LYS B 908 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 687 -12.54 70.23 REMARK 500 MET A 812 -25.98 75.87 REMARK 500 ARG A 867 -17.99 76.86 REMARK 500 MET A 872 -15.63 85.04 REMARK 500 LEU A 922 -71.57 -103.56 REMARK 500 ARG B 687 -16.49 74.46 REMARK 500 ASP B 711 72.64 59.30 REMARK 500 MET B 872 -25.10 73.95 REMARK 500 LEU B 922 -71.09 -90.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue STU A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue STU B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YZD RELATED DB: PDB DBREF 4YZC A 562 966 UNP O75460 ERN1_HUMAN 562 966 DBREF 4YZC B 562 966 UNP O75460 ERN1_HUMAN 562 966 SEQRES 1 A 405 SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS PRO LYS SEQRES 2 A 405 ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE VAL TYR SEQRES 3 A 405 ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL LYS ARG SEQRES 4 A 405 ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG GLU VAL SEQRES 5 A 405 GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN VAL ILE SEQRES 6 A 405 ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE GLN TYR SEQRES 7 A 405 ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN GLU TYR SEQRES 8 A 405 VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU GLU PRO SEQRES 9 A 405 ILE THR LEU LEU GLN GLN THR THR SER GLY LEU ALA HIS SEQRES 10 A 405 LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU LYS PRO SEQRES 11 A 405 HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS GLY LYS SEQRES 12 A 405 ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS LYS LYS SEQRES 13 A 405 LEU ALA VAL GLY ARG HIS SEP PHE SEP ARG ARG SEP GLY SEQRES 14 A 405 VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU MET LEU SEQRES 15 A 405 SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR VAL ASP SEQRES 16 A 405 ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL ILE SER SEQRES 17 A 405 GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN ARG GLN SEQRES 18 A 405 ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP CYS LEU SEQRES 19 A 405 HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG GLU LEU SEQRES 20 A 405 ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS ARG PRO SEQRES 21 A 405 SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE TRP SER SEQRES 22 A 405 LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL SER ASP SEQRES 23 A 405 ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE VAL LYS SEQRES 24 A 405 GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS MET ASP SEQRES 25 A 405 TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR ASP LEU SEQRES 26 A 405 ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL ARG ASP SEQRES 27 A 405 LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS TYR ARG SEQRES 28 A 405 GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY SER LEU SEQRES 29 A 405 PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG PHE PRO SEQRES 30 A 405 HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU LEU CYS SEQRES 31 A 405 SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE HIS GLU SEQRES 32 A 405 PRO PRO SEQRES 1 B 405 SER VAL VAL ILE VAL GLY LYS ILE SER PHE CYS PRO LYS SEQRES 2 B 405 ASP VAL LEU GLY HIS GLY ALA GLU GLY THR ILE VAL TYR SEQRES 3 B 405 ARG GLY MET PHE ASP ASN ARG ASP VAL ALA VAL LYS ARG SEQRES 4 B 405 ILE LEU PRO GLU CYS PHE SER PHE ALA ASP ARG GLU VAL SEQRES 5 B 405 GLN LEU LEU ARG GLU SER ASP GLU HIS PRO ASN VAL ILE SEQRES 6 B 405 ARG TYR PHE CYS THR GLU LYS ASP ARG GLN PHE GLN TYR SEQRES 7 B 405 ILE ALA ILE GLU LEU CYS ALA ALA THR LEU GLN GLU TYR SEQRES 8 B 405 VAL GLU GLN LYS ASP PHE ALA HIS LEU GLY LEU GLU PRO SEQRES 9 B 405 ILE THR LEU LEU GLN GLN THR THR SER GLY LEU ALA HIS SEQRES 10 B 405 LEU HIS SER LEU ASN ILE VAL HIS ARG ASP LEU LYS PRO SEQRES 11 B 405 HIS ASN ILE LEU ILE SER MET PRO ASN ALA HIS GLY LYS SEQRES 12 B 405 ILE LYS ALA MET ILE SER ASP PHE GLY LEU CYS LYS LYS SEQRES 13 B 405 LEU ALA VAL GLY ARG HIS SEP PHE SEP ARG ARG SEP GLY SEQRES 14 B 405 VAL PRO GLY THR GLU GLY TRP ILE ALA PRO GLU MET LEU SEQRES 15 B 405 SER GLU ASP CYS LYS GLU ASN PRO THR TYR THR VAL ASP SEQRES 16 B 405 ILE PHE SER ALA GLY CYS VAL PHE TYR TYR VAL ILE SER SEQRES 17 B 405 GLU GLY SER HIS PRO PHE GLY LYS SER LEU GLN ARG GLN SEQRES 18 B 405 ALA ASN ILE LEU LEU GLY ALA CYS SER LEU ASP CYS LEU SEQRES 19 B 405 HIS PRO GLU LYS HIS GLU ASP VAL ILE ALA ARG GLU LEU SEQRES 20 B 405 ILE GLU LYS MET ILE ALA MET ASP PRO GLN LYS ARG PRO SEQRES 21 B 405 SER ALA LYS HIS VAL LEU LYS HIS PRO PHE PHE TRP SER SEQRES 22 B 405 LEU GLU LYS GLN LEU GLN PHE PHE GLN ASP VAL SER ASP SEQRES 23 B 405 ARG ILE GLU LYS GLU SER LEU ASP GLY PRO ILE VAL LYS SEQRES 24 B 405 GLN LEU GLU ARG GLY GLY ARG ALA VAL VAL LYS MET ASP SEQRES 25 B 405 TRP ARG GLU ASN ILE THR VAL PRO LEU GLN THR ASP LEU SEQRES 26 B 405 ARG LYS PHE ARG THR TYR LYS GLY GLY SER VAL ARG ASP SEQRES 27 B 405 LEU LEU ARG ALA MET ARG ASN LYS LYS HIS HIS TYR ARG SEQRES 28 B 405 GLU LEU PRO ALA GLU VAL ARG GLU THR LEU GLY SER LEU SEQRES 29 B 405 PRO ASP ASP PHE VAL CYS TYR PHE THR SER ARG PHE PRO SEQRES 30 B 405 HIS LEU LEU ALA HIS THR TYR ARG ALA MET GLU LEU CYS SEQRES 31 B 405 SER HIS GLU ARG LEU PHE GLN PRO TYR TYR PHE HIS GLU SEQRES 32 B 405 PRO PRO MODRES 4YZC SEP A 724 SER MODIFIED RESIDUE MODRES 4YZC SEP A 726 SER MODIFIED RESIDUE MODRES 4YZC SEP A 729 SER MODIFIED RESIDUE MODRES 4YZC SEP B 724 SER MODIFIED RESIDUE MODRES 4YZC SEP B 726 SER MODIFIED RESIDUE MODRES 4YZC SEP B 729 SER MODIFIED RESIDUE HET SEP A 724 13 HET SEP A 726 13 HET SEP A 729 14 HET SEP B 724 13 HET SEP B 726 14 HET SEP B 729 14 HET STU A1001 61 HET STU B1001 61 HETNAM SEP PHOSPHOSERINE HETNAM STU STAUROSPORINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP 6(C3 H8 N O6 P) FORMUL 3 STU 2(C28 H26 N4 O3) FORMUL 5 HOH *58(H2 O) HELIX 1 AA1 ARG A 611 ASP A 620 1 10 HELIX 2 AA2 LEU A 649 VAL A 653 1 5 HELIX 3 AA3 PRO A 665 LEU A 682 1 18 HELIX 4 AA4 ASP A 711 CYS A 715 5 5 HELIX 5 AA5 ALA A 739 SER A 744 1 6 HELIX 6 AA6 TYR A 753 SER A 769 1 17 HELIX 7 AA7 LYS A 777 GLY A 788 1 12 HELIX 8 AA8 LYS A 799 LYS A 811 1 13 HELIX 9 AA9 ASP A 816 ARG A 820 5 5 HELIX 10 AB1 SER A 822 HIS A 829 1 8 HELIX 11 AB2 PRO A 830 TRP A 833 5 4 HELIX 12 AB3 SER A 834 GLU A 850 1 17 HELIX 13 AB4 GLY A 856 GLY A 865 1 10 HELIX 14 AB5 THR A 879 THR A 884 1 6 HELIX 15 AB6 SER A 896 HIS A 910 1 15 HELIX 16 AB7 TYR A 911 LEU A 914 5 4 HELIX 17 AB8 PRO A 915 GLY A 923 1 9 HELIX 18 AB9 PRO A 926 PHE A 937 1 12 HELIX 19 AC1 HIS A 939 MET A 948 1 10 HELIX 20 AC2 GLU A 949 SER A 952 5 4 HELIX 21 AC3 ARG B 611 ASP B 620 1 10 HELIX 22 AC4 LEU B 649 VAL B 653 1 5 HELIX 23 AC5 PRO B 665 LEU B 682 1 18 HELIX 24 AC6 ALA B 739 SER B 744 1 6 HELIX 25 AC7 TYR B 753 SER B 769 1 17 HELIX 26 AC8 LYS B 777 GLY B 788 1 12 HELIX 27 AC9 LYS B 799 ILE B 813 1 15 HELIX 28 AD1 ASP B 816 ARG B 820 5 5 HELIX 29 AD2 SER B 822 HIS B 829 1 8 HELIX 30 AD3 PRO B 830 TRP B 833 5 4 HELIX 31 AD4 SER B 834 GLU B 850 1 17 HELIX 32 AD5 GLY B 856 ARG B 864 1 9 HELIX 33 AD6 GLY B 865 LYS B 871 1 7 HELIX 34 AD7 THR B 879 ARG B 887 1 9 HELIX 35 AD8 SER B 896 HIS B 910 1 15 HELIX 36 AD9 PRO B 915 GLY B 923 1 9 HELIX 37 AE1 PRO B 926 PHE B 937 1 12 HELIX 38 AE2 HIS B 939 MET B 948 1 10 HELIX 39 AE3 GLU B 949 SER B 952 5 4 HELIX 40 AE4 GLU B 954 GLN B 958 5 5 SHEET 1 AA1 6 VAL A 564 VAL A 566 0 SHEET 2 AA1 6 ILE A 569 HIS A 579 -1 O PHE A 571 N VAL A 564 SHEET 3 AA1 6 ILE A 585 PHE A 591 -1 O MET A 590 N SER A 570 SHEET 4 AA1 6 ARG A 594 ILE A 601 -1 O VAL A 598 N TYR A 587 SHEET 5 AA1 6 GLN A 638 GLU A 643 -1 O ILE A 642 N ALA A 597 SHEET 6 AA1 6 TYR A 628 LYS A 633 -1 N GLU A 632 O TYR A 639 SHEET 1 AA2 3 CYS A 645 THR A 648 0 SHEET 2 AA2 3 LEU A 695 SER A 697 -1 O ILE A 696 N ALA A 647 SHEET 3 AA2 3 ALA A 707 MET A 708 -1 O MET A 708 N LEU A 695 SHEET 1 AA3 2 ILE A 684 VAL A 685 0 SHEET 2 AA3 2 LYS A 716 LYS A 717 -1 O LYS A 716 N VAL A 685 SHEET 1 AA4 6 VAL B 564 VAL B 566 0 SHEET 2 AA4 6 ILE B 569 HIS B 579 -1 O ILE B 569 N VAL B 566 SHEET 3 AA4 6 ILE B 585 PHE B 591 -1 O MET B 590 N SER B 570 SHEET 4 AA4 6 ASP B 595 ILE B 601 -1 O VAL B 596 N GLY B 589 SHEET 5 AA4 6 GLN B 638 GLU B 643 -1 O ILE B 642 N ALA B 597 SHEET 6 AA4 6 TYR B 628 LYS B 633 -1 N GLU B 632 O TYR B 639 SHEET 1 AA5 3 CYS B 645 THR B 648 0 SHEET 2 AA5 3 ILE B 694 SER B 697 -1 O ILE B 696 N ALA B 647 SHEET 3 AA5 3 ALA B 707 ILE B 709 -1 O MET B 708 N LEU B 695 SHEET 1 AA6 2 ILE B 684 VAL B 685 0 SHEET 2 AA6 2 LYS B 716 LYS B 717 -1 O LYS B 716 N VAL B 685 LINK C HIS A 723 N SEP A 724 1555 1555 1.33 LINK C SEP A 724 N PHE A 725 1555 1555 1.33 LINK C PHE A 725 N SEP A 726 1555 1555 1.33 LINK C SEP A 726 N ARG A 727 1555 1555 1.33 LINK C ARG A 728 N SEP A 729 1555 1555 1.33 LINK C SEP A 729 N GLY A 730 1555 1555 1.33 LINK C HIS B 723 N SEP B 724 1555 1555 1.33 LINK C SEP B 724 N PHE B 725 1555 1555 1.33 LINK C PHE B 725 N SEP B 726 1555 1555 1.33 LINK C SEP B 726 N ARG B 727 1555 1555 1.33 LINK C ARG B 728 N SEP B 729 1555 1555 1.33 LINK C SEP B 729 N GLY B 730 1555 1555 1.33 CISPEP 1 GLU A 850 LYS A 851 0 -2.44 CISPEP 2 GLY A 923 SER A 924 0 8.30 CISPEP 3 LEU A 925 PRO A 926 0 -23.71 CISPEP 4 GLU B 850 LYS B 851 0 -4.17 CISPEP 5 GLY B 923 SER B 924 0 7.12 CISPEP 6 LEU B 925 PRO B 926 0 -24.14 SITE 1 AC1 14 LEU A 577 GLY A 578 VAL A 586 ALA A 597 SITE 2 AC1 14 LYS A 599 ILE A 642 GLU A 643 LEU A 644 SITE 3 AC1 14 CYS A 645 ALA A 646 HIS A 692 LEU A 695 SITE 4 AC1 14 SER A 710 HOH A1111 SITE 1 AC2 14 LEU B 577 GLY B 578 VAL B 586 ALA B 597 SITE 2 AC2 14 LYS B 599 ILE B 626 ILE B 642 GLU B 643 SITE 3 AC2 14 LEU B 644 CYS B 645 ALA B 646 HIS B 692 SITE 4 AC2 14 LEU B 695 SER B 710 CRYST1 49.337 155.260 155.643 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020269 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006425 0.00000