PDB Short entry for 4Z1F HEADER CHAPERONE 27-MAR-15 4Z1F TITLE CRYSTAL STRUCTURE OF HUMAN TRAP1 WITH PU-H71 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 60-561; COMPND 5 SYNONYM: HSP 75,TNFR-ASSOCIATED PROTEIN 1,TUMOR NECROSIS FACTOR TYPE COMPND 6 1 RECEPTOR-ASSOCIATED PROTEIN,TRAP-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAP1, HSP75; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETDUET KEYWDS MITOCHONDRIAL HSP90 EXPDTA X-RAY DIFFRACTION AUTHOR C.LEE,H.K.PARK,J.H.RYU,B.H.KANG REVDAT 1 22-APR-15 4Z1F 0 JRNL AUTH C.LEE,H.K.PARK,H.JEONG,J.LIM,A.J.LEE,K.Y.CHEON,C.S.KIM, JRNL AUTH 2 A.P.THOMAS,B.BAE,N.D.KIM,S.H.KIM,P.G.SUH,J.H.RYU,B.H.KANG JRNL TITL DEVELOPMENT OF A MITOCHONDRIA-TARGETED HSP90 INHIBITOR BASED JRNL TITL 2 ON THE CRYSTAL STRUCTURES OF HUMAN TRAP1 JRNL REF J.AM.CHEM.SOC. V. 137 4358 2015 JRNL REFN ESSN 1520-5126 JRNL PMID 25785725 JRNL DOI 10.1021/JA511893N REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 17635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.3826 - 4.9073 0.98 2938 155 0.2237 0.2685 REMARK 3 2 4.9073 - 3.8970 0.99 2813 148 0.1992 0.2759 REMARK 3 3 3.8970 - 3.4049 1.00 2788 147 0.2133 0.2663 REMARK 3 4 3.4049 - 3.0939 1.00 2746 144 0.2406 0.2962 REMARK 3 5 3.0939 - 2.8722 1.00 2726 144 0.2476 0.2812 REMARK 3 6 2.8722 - 2.7030 1.00 2742 144 0.2716 0.3679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3573 REMARK 3 ANGLE : 0.917 4818 REMARK 3 CHIRALITY : 0.032 529 REMARK 3 PLANARITY : 0.005 609 REMARK 3 DIHEDRAL : 16.015 1338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4430 0.7637 22.0933 REMARK 3 T TENSOR REMARK 3 T11: 1.0641 T22: 0.4411 REMARK 3 T33: 0.7198 T12: -0.0706 REMARK 3 T13: -0.4094 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 3.1063 L22: 4.3584 REMARK 3 L33: 2.4485 L12: 0.3560 REMARK 3 L13: 0.0484 L23: 0.4270 REMARK 3 S TENSOR REMARK 3 S11: -0.2793 S12: 0.5218 S13: -0.0164 REMARK 3 S21: -0.3848 S22: 0.2979 S23: 0.7455 REMARK 3 S31: 0.1241 S32: -0.0786 S33: 0.0057 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7426 10.6733 20.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.9609 T22: 0.3285 REMARK 3 T33: 0.5783 T12: -0.0614 REMARK 3 T13: -0.4169 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.5084 L22: 3.0950 REMARK 3 L33: 1.3566 L12: -0.5072 REMARK 3 L13: -0.2589 L23: 0.3219 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.2872 S13: -0.0650 REMARK 3 S21: -0.3315 S22: 0.1374 S23: 0.3370 REMARK 3 S31: 0.0318 S32: -0.1705 S33: -0.0433 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7822 36.9564 19.2069 REMARK 3 T TENSOR REMARK 3 T11: 0.7277 T22: 0.5233 REMARK 3 T33: 0.7285 T12: -0.0561 REMARK 3 T13: -0.4145 T23: 0.2469 REMARK 3 L TENSOR REMARK 3 L11: 2.0273 L22: 1.9675 REMARK 3 L33: 1.8970 L12: -0.9047 REMARK 3 L13: 0.9700 L23: -0.8817 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.0143 S13: -0.2080 REMARK 3 S21: -0.0228 S22: 0.2523 S23: 0.4278 REMARK 3 S31: 0.3868 S32: -0.1327 S33: -0.1253 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 552) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1811 57.8105 11.3783 REMARK 3 T TENSOR REMARK 3 T11: 0.6298 T22: 0.8681 REMARK 3 T33: 1.0660 T12: 0.0909 REMARK 3 T13: -0.2233 T23: 0.4909 REMARK 3 L TENSOR REMARK 3 L11: 1.5339 L22: 2.5162 REMARK 3 L33: 2.0717 L12: -0.1306 REMARK 3 L13: 0.4698 L23: -1.2381 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: -0.4758 S13: -0.1070 REMARK 3 S21: 0.4348 S22: 0.5986 S23: 0.7764 REMARK 3 S31: -0.2854 S32: -1.0582 S33: -0.1038 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8K, 100MM CALCIUM ACETATE, REMARK 280 100MM SODIUM CACODYLATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.26100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.61150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.61150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.13050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.61150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.61150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 189.39150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.61150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.61150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.13050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.61150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.61150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 189.39150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 126.26100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 60 REMARK 465 THR A 61 REMARK 465 GLN A 62 REMARK 465 THR A 63 REMARK 465 ALA A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 66 REMARK 465 LYS A 67 REMARK 465 GLU A 68 REMARK 465 LEU A 172 REMARK 465 GLY A 173 REMARK 465 THR A 174 REMARK 465 ILE A 175 REMARK 465 ALA A 176 REMARK 465 ARG A 177 REMARK 465 SER A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 LYS A 181 REMARK 465 ALA A 182 REMARK 465 PHE A 183 REMARK 465 LEU A 184 REMARK 465 ASP A 185 REMARK 465 ALA A 186 REMARK 465 LEU A 187 REMARK 465 GLN A 188 REMARK 465 ASN A 189 REMARK 465 GLN A 190 REMARK 465 ALA A 191 REMARK 465 GLU A 192 REMARK 465 ALA A 193 REMARK 465 SER A 194 REMARK 465 SER A 195 REMARK 465 LYS A 196 REMARK 465 ILE A 197 REMARK 465 ILE A 198 REMARK 465 GLY A 199 REMARK 465 GLN A 200 REMARK 465 PHE A 201 REMARK 465 SER A 351 REMARK 465 MET A 352 REMARK 465 PHE A 353 REMARK 465 ASP A 354 REMARK 465 VAL A 355 REMARK 465 SER A 356 REMARK 465 ARG A 357 REMARK 465 GLU A 358 REMARK 465 LEU A 359 REMARK 465 GLY A 360 REMARK 465 SER A 361 REMARK 465 LEU A 398 REMARK 465 ASN A 399 REMARK 465 LEU A 400 REMARK 465 SER A 401 REMARK 465 ARG A 402 REMARK 465 GLU A 403 REMARK 465 LEU A 404 REMARK 465 LEU A 405 REMARK 465 GLN A 406 REMARK 465 GLU A 407 REMARK 465 THR A 494 REMARK 465 ASP A 553 REMARK 465 ILE A 554 REMARK 465 VAL A 555 REMARK 465 VAL A 556 REMARK 465 ASP A 557 REMARK 465 HIS A 558 REMARK 465 TYR A 559 REMARK 465 LYS A 560 REMARK 465 GLU A 561 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 492 CB - CA - C ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 88 99.65 -170.50 REMARK 500 ALA A 92 -30.45 -37.97 REMARK 500 SER A 104 -46.83 -144.01 REMARK 500 THR A 159 35.97 -94.53 REMARK 500 SER A 170 -89.44 -66.54 REMARK 500 SER A 236 -92.18 -84.54 REMARK 500 LYS A 258 170.79 -58.22 REMARK 500 ALA A 297 74.15 -68.36 REMARK 500 ALA A 376 79.20 -61.59 REMARK 500 ALA A 409 -54.33 -141.22 REMARK 500 ASP A 433 81.56 -165.16 REMARK 500 THR A 456 -60.02 -108.79 REMARK 500 ALA A 492 123.01 -28.64 REMARK 500 ARG A 540 -71.32 66.20 REMARK 500 ASP A 543 89.00 29.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 87 HIS A 88 -148.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H71 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z1G RELATED DB: PDB REMARK 900 RELATED ID: 4Z1H RELATED DB: PDB REMARK 900 RELATED ID: 4Z1I RELATED DB: PDB DBREF 4Z1F A 60 561 UNP Q12931 TRAP1_HUMAN 60 561 SEQRES 1 A 502 SER THR GLN THR ALA GLU ASP LYS GLU GLU PRO LEU HIS SEQRES 2 A 502 SER ILE ILE SER SER THR GLU SER VAL GLN GLY SER THR SEQRES 3 A 502 SER LYS HIS GLU PHE GLN ALA GLU THR LYS LYS LEU LEU SEQRES 4 A 502 ASP ILE VAL ALA ARG SER LEU TYR SER GLU LYS GLU VAL SEQRES 5 A 502 PHE ILE ARG GLU LEU ILE SER ASN ALA SER ASP ALA LEU SEQRES 6 A 502 GLU LYS LEU ARG HIS LYS LEU VAL SER ASP GLY GLN ALA SEQRES 7 A 502 LEU PRO GLU MET GLU ILE HIS LEU GLN THR ASN ALA GLU SEQRES 8 A 502 LYS GLY THR ILE THR ILE GLN ASP THR GLY ILE GLY MET SEQRES 9 A 502 THR GLN GLU GLU LEU VAL SER ASN LEU GLY THR ILE ALA SEQRES 10 A 502 ARG SER GLY SER LYS ALA PHE LEU ASP ALA LEU GLN ASN SEQRES 11 A 502 GLN ALA GLU ALA SER SER LYS ILE ILE GLY GLN PHE GLY SEQRES 12 A 502 VAL GLY PHE TYR SER ALA PHE MET VAL ALA ASP ARG VAL SEQRES 13 A 502 GLU VAL TYR SER ARG SER ALA ALA PRO GLY SER LEU GLY SEQRES 14 A 502 TYR GLN TRP LEU SER ASP GLY SER GLY VAL PHE GLU ILE SEQRES 15 A 502 ALA GLU ALA SER GLY VAL ARG THR GLY THR LYS ILE ILE SEQRES 16 A 502 ILE HIS LEU LYS SER ASP CYS LYS GLU PHE SER SER GLU SEQRES 17 A 502 ALA ARG VAL ARG ASP VAL VAL THR LYS TYR SER ASN PHE SEQRES 18 A 502 VAL SER PHE PRO LEU TYR LEU ASN GLY ARG ARG MET ASN SEQRES 19 A 502 THR LEU GLN ALA ILE TRP MET MET ASP PRO LYS ASP VAL SEQRES 20 A 502 ARG GLU TRP GLN HIS GLU GLU PHE TYR ARG TYR VAL ALA SEQRES 21 A 502 GLN ALA HIS ASP LYS PRO ARG TYR THR LEU HIS TYR LYS SEQRES 22 A 502 THR ASP ALA PRO LEU ASN ILE ARG SER ILE PHE TYR VAL SEQRES 23 A 502 PRO ASP MET LYS PRO SER MET PHE ASP VAL SER ARG GLU SEQRES 24 A 502 LEU GLY SER SER VAL ALA LEU TYR SER ARG LYS VAL LEU SEQRES 25 A 502 ILE GLN THR LYS ALA THR ASP ILE LEU PRO LYS TRP LEU SEQRES 26 A 502 ARG PHE ILE ARG GLY VAL VAL ASP SER GLU ASP ILE PRO SEQRES 27 A 502 LEU ASN LEU SER ARG GLU LEU LEU GLN GLU SER ALA LEU SEQRES 28 A 502 ILE ARG LYS LEU ARG ASP VAL LEU GLN GLN ARG LEU ILE SEQRES 29 A 502 LYS PHE PHE ILE ASP GLN SER LYS LYS ASP ALA GLU LYS SEQRES 30 A 502 TYR ALA LYS PHE PHE GLU ASP TYR GLY LEU PHE MET ARG SEQRES 31 A 502 GLU GLY ILE VAL THR ALA THR GLU GLN GLU VAL LYS GLU SEQRES 32 A 502 ASP ILE ALA LYS LEU LEU ARG TYR GLU SER SER ALA LEU SEQRES 33 A 502 PRO SER GLY GLN LEU THR SER LEU SER GLU TYR ALA SER SEQRES 34 A 502 ARG MET ARG ALA GLY THR ARG ASN ILE TYR TYR LEU CYS SEQRES 35 A 502 ALA PRO ASN ARG HIS LEU ALA GLU HIS SER PRO TYR TYR SEQRES 36 A 502 GLU ALA MET LYS LYS LYS ASP THR GLU VAL LEU PHE CYS SEQRES 37 A 502 PHE GLU GLN PHE ASP GLU LEU THR LEU LEU HIS LEU ARG SEQRES 38 A 502 GLU PHE ASP LYS LYS LYS LEU ILE SER VAL GLU THR ASP SEQRES 39 A 502 ILE VAL VAL ASP HIS TYR LYS GLU HET H71 A1001 28 HETNAM H71 8-[(6-IODO-1,3-BENZODIOXOL-5-YL)THIO]-9-[3- HETNAM 2 H71 (ISOPROPYLAMINO)PROPYL]-9H-PURIN-6-AMINE FORMUL 2 H71 C18 H21 I N6 O2 S FORMUL 3 HOH *34(H2 O) HELIX 1 AA1 GLN A 91 SER A 104 1 14 HELIX 2 AA2 GLU A 110 GLY A 135 1 26 HELIX 3 AA3 THR A 164 SER A 170 1 7 HELIX 4 AA4 GLY A 202 MET A 210 5 9 HELIX 5 AA5 CYS A 261 SER A 265 5 5 HELIX 6 AA6 SER A 266 SER A 278 1 13 HELIX 7 AA7 ALA A 297 MET A 301 5 5 HELIX 8 AA8 ARG A 307 GLN A 320 1 14 HELIX 9 AA9 PRO A 381 ARG A 385 5 5 HELIX 10 AB1 ALA A 409 LYS A 431 1 23 HELIX 11 AB2 ASP A 433 ALA A 455 1 23 HELIX 12 AB3 GLU A 457 LYS A 466 1 10 HELIX 13 AB4 SER A 482 SER A 488 1 7 HELIX 14 AB5 ASN A 504 HIS A 510 1 7 HELIX 15 AB6 SER A 511 LYS A 519 1 9 HELIX 16 AB7 GLU A 529 ARG A 540 1 12 SHEET 1 AA1 3 SER A 80 VAL A 81 0 SHEET 2 AA1 3 VAL A 238 SER A 245 -1 O SER A 245 N SER A 80 SHEET 3 AA1 3 SER A 86 GLU A 89 -1 N SER A 86 O ILE A 241 SHEET 1 AA2 9 SER A 80 VAL A 81 0 SHEET 2 AA2 9 VAL A 238 SER A 245 -1 O SER A 245 N SER A 80 SHEET 3 AA2 9 GLY A 228 SER A 233 -1 N GLN A 230 O ALA A 242 SHEET 4 AA2 9 ALA A 212 ARG A 220 -1 N VAL A 217 O TRP A 231 SHEET 5 AA2 9 GLY A 250 LEU A 257 -1 O ILE A 254 N GLU A 216 SHEET 6 AA2 9 THR A 153 ASP A 158 -1 N ILE A 154 O ILE A 255 SHEET 7 AA2 9 ILE A 143 ASN A 148 -1 N HIS A 144 O GLN A 157 SHEET 8 AA2 9 LEU A 285 LEU A 287 1 O TYR A 286 N ILE A 143 SHEET 9 AA2 9 ARG A 290 ARG A 291 -1 O ARG A 290 N LEU A 287 SHEET 1 AA3 5 PRO A 325 THR A 333 0 SHEET 2 AA3 5 ILE A 339 PRO A 346 -1 O VAL A 345 N ARG A 326 SHEET 3 AA3 5 ARG A 388 ASP A 392 -1 O ARG A 388 N TYR A 344 SHEET 4 AA3 5 ALA A 364 SER A 367 1 N ALA A 364 O VAL A 391 SHEET 5 AA3 5 VAL A 370 GLN A 373 -1 O GLN A 373 N LEU A 365 SHEET 1 AA4 5 LEU A 480 THR A 481 0 SHEET 2 AA4 5 TYR A 470 SER A 472 -1 N TYR A 470 O THR A 481 SHEET 3 AA4 5 LEU A 525 CYS A 527 -1 O PHE A 526 N GLU A 471 SHEET 4 AA4 5 ASN A 496 CYS A 501 1 N TYR A 498 O LEU A 525 SHEET 5 AA4 5 LYS A 546 SER A 549 1 O LYS A 546 N ILE A 497 SSBOND 1 CYS A 501 CYS A 527 1555 1555 1.98 SITE 1 AC1 12 ALA A 123 ASP A 158 ILE A 161 GLY A 162 SITE 2 AC1 12 MET A 163 GLU A 167 ASN A 171 GLY A 202 SITE 3 AC1 12 PHE A 205 TRP A 231 THR A 251 HOH A1111 CRYST1 69.223 69.223 252.522 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003960 0.00000