PDB Short entry for 4Z1H HEADER CHAPERONE 27-MAR-15 4Z1H TITLE CRYSTAL STRUCTURE OF HUMAN TRAP1 WITH SMTIN-P01 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 60-561; COMPND 5 SYNONYM: HSP 75,TNFR-ASSOCIATED PROTEIN 1,TUMOR NECROSIS FACTOR TYPE COMPND 6 1 RECEPTOR-ASSOCIATED PROTEIN,TRAP-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAP1, HSP75; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MITOCHONDRIAL HSP90 EXPDTA X-RAY DIFFRACTION AUTHOR C.LEE,H.K.PARK,J.H.RYU,B.H.KANG REVDAT 1 22-APR-15 4Z1H 0 JRNL AUTH C.LEE,H.K.PARK,H.JEONG,J.LIM,A.J.LEE,K.Y.CHEON,C.S.KIM, JRNL AUTH 2 A.P.THOMAS,B.BAE,N.D.KIM,S.H.KIM,P.G.SUH,J.H.RYU,B.H.KANG JRNL TITL DEVELOPMENT OF A MITOCHONDRIA-TARGETED HSP90 INHIBITOR BASED JRNL TITL 2 ON THE CRYSTAL STRUCTURES OF HUMAN TRAP1 JRNL REF J.AM.CHEM.SOC. V. 137 4358 2015 JRNL REFN ESSN 1520-5126 JRNL PMID 25785725 JRNL DOI 10.1021/JA511893N REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3563 - 4.9461 1.00 2973 157 0.2461 0.2671 REMARK 3 2 4.9461 - 3.9276 1.00 2808 148 0.2132 0.2633 REMARK 3 3 3.9276 - 3.4317 1.00 2755 145 0.2219 0.3065 REMARK 3 4 3.4317 - 3.1181 1.00 2735 144 0.2516 0.3244 REMARK 3 5 3.1181 - 2.8948 1.00 2703 142 0.2703 0.3260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3607 REMARK 3 ANGLE : 0.987 4863 REMARK 3 CHIRALITY : 0.035 530 REMARK 3 PLANARITY : 0.005 614 REMARK 3 DIHEDRAL : 16.014 1341 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4620 1.5163 22.5056 REMARK 3 T TENSOR REMARK 3 T11: 0.8561 T22: 0.3735 REMARK 3 T33: 0.5279 T12: -0.0969 REMARK 3 T13: -0.3667 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 3.9050 L22: 3.9989 REMARK 3 L33: 3.6018 L12: 0.3106 REMARK 3 L13: 0.7911 L23: 0.9010 REMARK 3 S TENSOR REMARK 3 S11: -0.3786 S12: 0.5851 S13: 0.2418 REMARK 3 S21: -0.4307 S22: 0.3467 S23: 0.8323 REMARK 3 S31: 0.2250 S32: 0.1564 S33: -0.0273 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6024 11.3783 20.8564 REMARK 3 T TENSOR REMARK 3 T11: 0.8672 T22: 0.3333 REMARK 3 T33: 0.4904 T12: -0.1178 REMARK 3 T13: -0.3313 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 1.3785 L22: 3.1694 REMARK 3 L33: 1.1679 L12: -0.1930 REMARK 3 L13: -0.3602 L23: 0.6954 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: 0.3113 S13: 0.0277 REMARK 3 S21: -0.4680 S22: 0.2510 S23: 0.4123 REMARK 3 S31: 0.1735 S32: -0.1646 S33: -0.0467 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6179 37.6492 19.5391 REMARK 3 T TENSOR REMARK 3 T11: 0.6952 T22: 0.4049 REMARK 3 T33: 0.6354 T12: -0.0329 REMARK 3 T13: -0.5347 T23: 0.3246 REMARK 3 L TENSOR REMARK 3 L11: 2.0995 L22: 1.8179 REMARK 3 L33: 2.1299 L12: -1.1711 REMARK 3 L13: 0.6943 L23: -1.2691 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: -0.1936 S13: -0.2175 REMARK 3 S21: 0.0820 S22: 0.3135 S23: 0.3770 REMARK 3 S31: 0.3572 S32: -0.0983 S33: 0.2516 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 552 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0598 58.2973 11.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.5368 T22: 0.6447 REMARK 3 T33: 1.0220 T12: 0.1413 REMARK 3 T13: -0.2759 T23: 0.5560 REMARK 3 L TENSOR REMARK 3 L11: 2.7100 L22: 3.4724 REMARK 3 L33: 2.9271 L12: -1.1676 REMARK 3 L13: 0.6060 L23: -1.3228 REMARK 3 S TENSOR REMARK 3 S11: 0.0965 S12: -0.3533 S13: 0.1945 REMARK 3 S21: 0.3778 S22: 0.6005 S23: 0.7281 REMARK 3 S31: -0.4224 S32: -1.0401 S33: -0.1213 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14775 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8K, 100MM CALCIUM ACETATE, REMARK 280 100MM SODIUM CACODYLATE., PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.88700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.66800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.66800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.94350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.66800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.66800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 191.83050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.66800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.66800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.94350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.66800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.66800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 191.83050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 127.88700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 60 REMARK 465 THR A 61 REMARK 465 GLN A 62 REMARK 465 THR A 63 REMARK 465 ALA A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 66 REMARK 465 LYS A 67 REMARK 465 GLU A 68 REMARK 465 GLU A 69 REMARK 465 LEU A 172 REMARK 465 GLY A 173 REMARK 465 THR A 174 REMARK 465 ILE A 175 REMARK 465 ALA A 176 REMARK 465 ARG A 177 REMARK 465 SER A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 LYS A 181 REMARK 465 ALA A 182 REMARK 465 PHE A 183 REMARK 465 LEU A 184 REMARK 465 ASP A 185 REMARK 465 ALA A 186 REMARK 465 LEU A 187 REMARK 465 GLN A 188 REMARK 465 ASN A 189 REMARK 465 GLN A 190 REMARK 465 ALA A 191 REMARK 465 GLU A 192 REMARK 465 ALA A 193 REMARK 465 SER A 194 REMARK 465 SER A 195 REMARK 465 LYS A 196 REMARK 465 ILE A 197 REMARK 465 ILE A 198 REMARK 465 GLY A 199 REMARK 465 GLN A 200 REMARK 465 SER A 351 REMARK 465 MET A 352 REMARK 465 PHE A 353 REMARK 465 ASP A 354 REMARK 465 VAL A 355 REMARK 465 SER A 356 REMARK 465 ARG A 357 REMARK 465 GLU A 358 REMARK 465 LEU A 359 REMARK 465 GLY A 360 REMARK 465 SER A 361 REMARK 465 LEU A 398 REMARK 465 ASN A 399 REMARK 465 LEU A 400 REMARK 465 SER A 401 REMARK 465 ARG A 402 REMARK 465 GLU A 403 REMARK 465 LEU A 404 REMARK 465 LEU A 405 REMARK 465 GLN A 406 REMARK 465 GLU A 407 REMARK 465 THR A 494 REMARK 465 ASP A 553 REMARK 465 ILE A 554 REMARK 465 VAL A 555 REMARK 465 VAL A 556 REMARK 465 ASP A 557 REMARK 465 HIS A 558 REMARK 465 TYR A 559 REMARK 465 LYS A 560 REMARK 465 GLU A 561 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 485 OG SER A 488 2.11 REMARK 500 O ALA A 465 O HOH A 701 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 382 CG2 THR A 552 7465 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 336 C - N - CA ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 96 -70.01 -53.99 REMARK 500 ARG A 103 13.39 -154.03 REMARK 500 SER A 104 24.92 -158.52 REMARK 500 SER A 170 -76.63 -66.28 REMARK 500 SER A 236 -165.45 -70.42 REMARK 500 MET A 292 -67.52 -123.99 REMARK 500 ALA A 297 77.01 -62.67 REMARK 500 PRO A 303 -32.61 -36.02 REMARK 500 GLU A 308 -35.73 -37.07 REMARK 500 ASP A 323 -164.09 -101.46 REMARK 500 ALA A 335 -83.78 -66.66 REMARK 500 LYS A 369 16.91 59.36 REMARK 500 LYS A 375 51.99 -94.12 REMARK 500 ALA A 376 89.23 -54.59 REMARK 500 ASP A 378 23.74 -77.79 REMARK 500 ALA A 409 -57.39 -133.81 REMARK 500 ALA A 455 -172.95 -66.59 REMARK 500 THR A 456 -75.35 -126.52 REMARK 500 GLU A 485 -100.23 -66.00 REMARK 500 TYR A 486 15.54 -66.74 REMARK 500 SER A 488 -29.52 -147.09 REMARK 500 CYS A 501 71.59 -110.09 REMARK 500 ALA A 502 -155.03 -76.23 REMARK 500 ASP A 521 61.57 39.35 REMARK 500 ARG A 540 -72.73 51.29 REMARK 500 ASP A 543 57.38 71.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4KP A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z1F RELATED DB: PDB REMARK 900 RELATED ID: 4Z1G RELATED DB: PDB REMARK 900 RELATED ID: 4Z1I RELATED DB: PDB DBREF 4Z1H A 60 561 UNP Q12931 TRAP1_HUMAN 60 561 SEQRES 1 A 502 SER THR GLN THR ALA GLU ASP LYS GLU GLU PRO LEU HIS SEQRES 2 A 502 SER ILE ILE SER SER THR GLU SER VAL GLN GLY SER THR SEQRES 3 A 502 SER LYS HIS GLU PHE GLN ALA GLU THR LYS LYS LEU LEU SEQRES 4 A 502 ASP ILE VAL ALA ARG SER LEU TYR SER GLU LYS GLU VAL SEQRES 5 A 502 PHE ILE ARG GLU LEU ILE SER ASN ALA SER ASP ALA LEU SEQRES 6 A 502 GLU LYS LEU ARG HIS LYS LEU VAL SER ASP GLY GLN ALA SEQRES 7 A 502 LEU PRO GLU MET GLU ILE HIS LEU GLN THR ASN ALA GLU SEQRES 8 A 502 LYS GLY THR ILE THR ILE GLN ASP THR GLY ILE GLY MET SEQRES 9 A 502 THR GLN GLU GLU LEU VAL SER ASN LEU GLY THR ILE ALA SEQRES 10 A 502 ARG SER GLY SER LYS ALA PHE LEU ASP ALA LEU GLN ASN SEQRES 11 A 502 GLN ALA GLU ALA SER SER LYS ILE ILE GLY GLN PHE GLY SEQRES 12 A 502 VAL GLY PHE TYR SER ALA PHE MET VAL ALA ASP ARG VAL SEQRES 13 A 502 GLU VAL TYR SER ARG SER ALA ALA PRO GLY SER LEU GLY SEQRES 14 A 502 TYR GLN TRP LEU SER ASP GLY SER GLY VAL PHE GLU ILE SEQRES 15 A 502 ALA GLU ALA SER GLY VAL ARG THR GLY THR LYS ILE ILE SEQRES 16 A 502 ILE HIS LEU LYS SER ASP CYS LYS GLU PHE SER SER GLU SEQRES 17 A 502 ALA ARG VAL ARG ASP VAL VAL THR LYS TYR SER ASN PHE SEQRES 18 A 502 VAL SER PHE PRO LEU TYR LEU ASN GLY ARG ARG MET ASN SEQRES 19 A 502 THR LEU GLN ALA ILE TRP MET MET ASP PRO LYS ASP VAL SEQRES 20 A 502 ARG GLU TRP GLN HIS GLU GLU PHE TYR ARG TYR VAL ALA SEQRES 21 A 502 GLN ALA HIS ASP LYS PRO ARG TYR THR LEU HIS TYR LYS SEQRES 22 A 502 THR ASP ALA PRO LEU ASN ILE ARG SER ILE PHE TYR VAL SEQRES 23 A 502 PRO ASP MET LYS PRO SER MET PHE ASP VAL SER ARG GLU SEQRES 24 A 502 LEU GLY SER SER VAL ALA LEU TYR SER ARG LYS VAL LEU SEQRES 25 A 502 ILE GLN THR LYS ALA THR ASP ILE LEU PRO LYS TRP LEU SEQRES 26 A 502 ARG PHE ILE ARG GLY VAL VAL ASP SER GLU ASP ILE PRO SEQRES 27 A 502 LEU ASN LEU SER ARG GLU LEU LEU GLN GLU SER ALA LEU SEQRES 28 A 502 ILE ARG LYS LEU ARG ASP VAL LEU GLN GLN ARG LEU ILE SEQRES 29 A 502 LYS PHE PHE ILE ASP GLN SER LYS LYS ASP ALA GLU LYS SEQRES 30 A 502 TYR ALA LYS PHE PHE GLU ASP TYR GLY LEU PHE MET ARG SEQRES 31 A 502 GLU GLY ILE VAL THR ALA THR GLU GLN GLU VAL LYS GLU SEQRES 32 A 502 ASP ILE ALA LYS LEU LEU ARG TYR GLU SER SER ALA LEU SEQRES 33 A 502 PRO SER GLY GLN LEU THR SER LEU SER GLU TYR ALA SER SEQRES 34 A 502 ARG MET ARG ALA GLY THR ARG ASN ILE TYR TYR LEU CYS SEQRES 35 A 502 ALA PRO ASN ARG HIS LEU ALA GLU HIS SER PRO TYR TYR SEQRES 36 A 502 GLU ALA MET LYS LYS LYS ASP THR GLU VAL LEU PHE CYS SEQRES 37 A 502 PHE GLU GLN PHE ASP GLU LEU THR LEU LEU HIS LEU ARG SEQRES 38 A 502 GLU PHE ASP LYS LYS LYS LEU ILE SER VAL GLU THR ASP SEQRES 39 A 502 ILE VAL VAL ASP HIS TYR LYS GLU HET 4KP A 601 46 HETNAM 4KP 8-[(6-IODO-1,3-BENZODIOXOL-5-YL)SULFANYL]-9-[6- HETNAM 2 4KP (TRIPHENYL-LAMBDA~5~-PHOSPHANYL)HEXYL]-9H-PURIN-6- HETNAM 3 4KP AMINE FORMUL 2 4KP C36 H35 I N5 O2 P S FORMUL 3 HOH *21(H2 O) HELIX 1 AA1 GLN A 91 LEU A 105 1 15 HELIX 2 AA2 GLU A 110 GLY A 135 1 26 HELIX 3 AA3 THR A 164 ASN A 171 1 8 HELIX 4 AA4 GLY A 202 MET A 210 5 9 HELIX 5 AA5 ASP A 260 SER A 265 5 6 HELIX 6 AA6 SER A 266 SER A 278 1 13 HELIX 7 AA7 ARG A 307 ALA A 319 1 13 HELIX 8 AA8 ALA A 376 LEU A 380 5 5 HELIX 9 AA9 PRO A 381 ARG A 385 5 5 HELIX 10 AB1 ILE A 411 ASP A 433 1 23 HELIX 11 AB2 ASP A 433 ALA A 455 1 23 HELIX 12 AB3 GLU A 457 LYS A 466 1 10 HELIX 13 AB4 ASN A 504 HIS A 510 1 7 HELIX 14 AB5 SER A 511 LYS A 519 1 9 HELIX 15 AB6 GLU A 529 ARG A 540 1 12 SHEET 1 AA1 3 SER A 80 VAL A 81 0 SHEET 2 AA1 3 VAL A 238 SER A 245 -1 O SER A 245 N SER A 80 SHEET 3 AA1 3 SER A 86 GLU A 89 -1 N HIS A 88 O PHE A 239 SHEET 1 AA2 9 SER A 80 VAL A 81 0 SHEET 2 AA2 9 VAL A 238 SER A 245 -1 O SER A 245 N SER A 80 SHEET 3 AA2 9 GLY A 228 SER A 233 -1 N LEU A 232 O GLU A 240 SHEET 4 AA2 9 ALA A 212 ARG A 220 -1 N VAL A 215 O SER A 233 SHEET 5 AA2 9 GLY A 250 LEU A 257 -1 O LYS A 252 N TYR A 218 SHEET 6 AA2 9 THR A 153 ASP A 158 -1 N ILE A 154 O ILE A 255 SHEET 7 AA2 9 ILE A 143 ASN A 148 -1 N HIS A 144 O GLN A 157 SHEET 8 AA2 9 LEU A 285 LEU A 287 1 O TYR A 286 N LEU A 145 SHEET 9 AA2 9 ARG A 290 ARG A 291 -1 O ARG A 290 N LEU A 287 SHEET 1 AA3 5 PRO A 325 THR A 333 0 SHEET 2 AA3 5 ILE A 339 PRO A 346 -1 O VAL A 345 N ARG A 326 SHEET 3 AA3 5 ARG A 388 ASP A 392 -1 O ARG A 388 N TYR A 344 SHEET 4 AA3 5 ALA A 364 SER A 367 1 N ALA A 364 O GLY A 389 SHEET 5 AA3 5 VAL A 370 GLN A 373 -1 O GLN A 373 N LEU A 365 SHEET 1 AA4 4 GLU A 471 SER A 472 0 SHEET 2 AA4 4 VAL A 524 PHE A 526 -1 O PHE A 526 N GLU A 471 SHEET 3 AA4 4 ILE A 497 LEU A 500 1 N LEU A 500 O LEU A 525 SHEET 4 AA4 4 LEU A 547 SER A 549 1 O ILE A 548 N ILE A 497 SSBOND 1 CYS A 501 CYS A 527 1555 1555 2.05 LINK SG CYS A 501 CB CYS A 527 1555 1555 1.64 CISPEP 1 PHE A 201 GLY A 202 0 2.97 SITE 1 AC1 13 ASN A 119 ALA A 123 ASP A 158 ILE A 161 SITE 2 AC1 13 MET A 163 GLU A 167 SER A 170 ASN A 171 SITE 3 AC1 13 GLY A 202 PHE A 205 TRP A 231 THR A 251 SITE 4 AC1 13 HOH A 713 CRYST1 69.336 69.336 255.774 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003910 0.00000