PDB Short entry for 4Z2Z HEADER HYDROLASE 30-MAR-15 4Z2Z TITLE NEW CRYSTAL STRUCTURE OF YEAST DDI1 ASPARTYL PROTEASE REVEALS TITLE 2 SUBSTRATE ENGAGEMENT MODE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DAMAGE-INDUCIBLE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 185-325; COMPND 5 SYNONYM: V-SNARE-MASTER 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: DDI1, VSM1, YER143W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS PROTEASE, DDI1, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.-F.TREMPE,X.FENG,K.GEHRING REVDAT 5 27-SEP-23 4Z2Z 1 REMARK REVDAT 4 08-JAN-20 4Z2Z 1 REMARK REVDAT 3 06-SEP-17 4Z2Z 1 REMARK REVDAT 2 12-OCT-16 4Z2Z 1 JRNL REVDAT 1 13-APR-16 4Z2Z 0 JRNL AUTH J.F.TREMPE,K.G.SASKOVA,M.SIVA,C.D.RATCLIFFE,V.VEVERKA, JRNL AUTH 2 A.HOEGL,M.MENADE,X.FENG,S.SHENKER,M.SVOBODA,M.KOZISEK, JRNL AUTH 3 J.KONVALINKA,K.GEHRING JRNL TITL STRUCTURAL STUDIES OF THE YEAST DNA DAMAGE-INDUCIBLE PROTEIN JRNL TITL 2 DDI1 REVEAL DOMAIN ARCHITECTURE OF THIS EUKARYOTIC PROTEIN JRNL TITL 3 FAMILY. JRNL REF SCI REP V. 6 33671 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27646017 JRNL DOI 10.1038/SREP33671 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 23898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1334 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2003 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10000 REMARK 3 B22 (A**2) : -1.40000 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.445 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2135 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2930 ; 1.478 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 6.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;33.760 ;25.059 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;13.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.246 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1567 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1086 ; 1.012 ; 2.502 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1362 ; 1.653 ; 3.738 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1049 ; 1.401 ; 2.667 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3181 ; 4.408 ;21.209 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0110 -0.8300 6.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.2659 T22: 0.0617 REMARK 3 T33: 0.0278 T12: -0.0121 REMARK 3 T13: -0.0299 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.4008 L22: 2.1874 REMARK 3 L33: 2.0486 L12: 0.7331 REMARK 3 L13: 0.6745 L23: 2.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: -0.0401 S13: -0.0534 REMARK 3 S21: -0.5038 S22: 0.0683 S23: -0.0134 REMARK 3 S31: -0.3846 S32: 0.0970 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 200 B 325 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7370 12.8070 27.8060 REMARK 3 T TENSOR REMARK 3 T11: 0.0633 T22: 0.0942 REMARK 3 T33: 0.0752 T12: 0.0047 REMARK 3 T13: -0.0219 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.6623 L22: 3.2247 REMARK 3 L33: 0.7852 L12: -0.2614 REMARK 3 L13: 0.6574 L23: 0.3796 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: -0.0792 S13: 0.0309 REMARK 3 S21: -0.0315 S22: -0.0434 S23: 0.1496 REMARK 3 S31: -0.0420 S32: -0.0945 S33: 0.0755 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2720 35.6000 14.8340 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: 0.0983 REMARK 3 T33: 0.1448 T12: -0.0130 REMARK 3 T13: 0.0050 T23: 0.0551 REMARK 3 L TENSOR REMARK 3 L11: 10.0920 L22: 20.3065 REMARK 3 L33: 3.4730 L12: -9.0070 REMARK 3 L13: -1.1621 L23: 2.3189 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: 0.5963 S13: 0.1628 REMARK 3 S21: -1.0263 S22: -0.1527 S23: -0.4078 REMARK 3 S31: -0.1689 S32: -0.2498 S33: 0.1152 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 188 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4780 -26.2110 16.0630 REMARK 3 T TENSOR REMARK 3 T11: 0.2259 T22: 0.0923 REMARK 3 T33: 0.0991 T12: 0.0073 REMARK 3 T13: -0.0633 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.3279 L22: 18.7375 REMARK 3 L33: 0.3291 L12: -0.9297 REMARK 3 L13: 0.1153 L23: 2.3144 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: 0.1120 S13: 0.0606 REMARK 3 S21: -0.3348 S22: -0.1222 S23: 0.4406 REMARK 3 S31: -0.0474 S32: -0.0041 S33: 0.0861 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 453 REMARK 3 RESIDUE RANGE : B 401 B 496 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6150 8.3030 21.7050 REMARK 3 T TENSOR REMARK 3 T11: 0.0894 T22: 0.0945 REMARK 3 T33: 0.0625 T12: -0.0078 REMARK 3 T13: -0.0300 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.1854 L22: 1.6124 REMARK 3 L33: 0.4165 L12: 0.2069 REMARK 3 L13: 0.2684 L23: 0.4356 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: -0.0320 S13: 0.0233 REMARK 3 S21: -0.1266 S22: 0.0023 S23: -0.0032 REMARK 3 S31: -0.0460 S32: -0.0139 S33: 0.0348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4Z2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25235 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.12700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2I1A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE-CITRATE, PH 4.2, 0.4M REMARK 280 NACL, 20% PEG 8000, 8 MG/ML PROTEIN, 1:1 UL DROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.75750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.78100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.02550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.78100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.75750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.02550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 180 REMARK 465 PRO A 181 REMARK 465 LEU A 182 REMARK 465 GLY A 183 REMARK 465 SER A 184 REMARK 465 GLU A 185 REMARK 465 GLN A 186 REMARK 465 LEU A 187 REMARK 465 ARG A 188 REMARK 465 MET A 197 REMARK 465 PHE A 198 REMARK 465 ILE A 247 REMARK 465 GLY A 248 REMARK 465 GLU A 249 REMARK 465 ALA A 250 REMARK 465 ARG A 251 REMARK 465 GLY A 252 REMARK 465 VAL A 253 REMARK 465 GLY A 254 REMARK 465 THR A 255 REMARK 465 GLY A 256 REMARK 465 LYS A 325 REMARK 465 GLY B 180 REMARK 465 PRO B 181 REMARK 465 LEU B 182 REMARK 465 GLY B 183 REMARK 465 SER B 184 REMARK 465 GLU B 185 REMARK 465 GLN B 186 REMARK 465 LEU B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 199 OG1 CG2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 PHE A 246 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 257 N CA CB CG CD CE NZ REMARK 470 GLN A 264 CG CD OE1 NE2 REMARK 470 ASP A 284 CG OD1 OD2 REMARK 470 LYS A 304 CD CE NZ REMARK 470 GLU A 305 CD OE1 OE2 REMARK 470 GLU A 320 CD OE1 OE2 REMARK 470 ARG B 188 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 ARG B 240 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 251 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 LYS B 325 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 264 56.65 -153.28 REMARK 500 GLU A 270 -118.90 56.18 REMARK 500 ALA A 311 -121.13 44.52 REMARK 500 ILE B 247 -154.41 -124.37 REMARK 500 GLU B 270 -119.01 54.05 REMARK 500 ALA B 311 -123.04 46.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 496 DISTANCE = 7.28 ANGSTROMS DBREF 4Z2Z A 185 325 UNP P40087 DDI1_YEAST 185 325 DBREF 4Z2Z B 185 325 UNP P40087 DDI1_YEAST 185 325 SEQADV 4Z2Z GLY A 180 UNP P40087 EXPRESSION TAG SEQADV 4Z2Z PRO A 181 UNP P40087 EXPRESSION TAG SEQADV 4Z2Z LEU A 182 UNP P40087 EXPRESSION TAG SEQADV 4Z2Z GLY A 183 UNP P40087 EXPRESSION TAG SEQADV 4Z2Z SER A 184 UNP P40087 EXPRESSION TAG SEQADV 4Z2Z GLY B 180 UNP P40087 EXPRESSION TAG SEQADV 4Z2Z PRO B 181 UNP P40087 EXPRESSION TAG SEQADV 4Z2Z LEU B 182 UNP P40087 EXPRESSION TAG SEQADV 4Z2Z GLY B 183 UNP P40087 EXPRESSION TAG SEQADV 4Z2Z SER B 184 UNP P40087 EXPRESSION TAG SEQRES 1 A 146 GLY PRO LEU GLY SER GLU GLN LEU ARG ASN ALA ILE GLU SEQRES 2 A 146 TYR THR PRO GLU MET PHE THR GLN VAL PRO MET LEU TYR SEQRES 3 A 146 ILE ASN ILE GLU ILE ASN ASN TYR PRO VAL LYS ALA PHE SEQRES 4 A 146 VAL ASP THR GLY ALA GLN THR THR ILE MET SER THR ARG SEQRES 5 A 146 LEU ALA LYS LYS THR GLY LEU SER ARG MET ILE ASP LYS SEQRES 6 A 146 ARG PHE ILE GLY GLU ALA ARG GLY VAL GLY THR GLY LYS SEQRES 7 A 146 ILE ILE GLY ARG ILE HIS GLN ALA GLN VAL LYS ILE GLU SEQRES 8 A 146 THR GLN TYR ILE PRO CYS SER PHE THR VAL LEU ASP THR SEQRES 9 A 146 ASP ILE ASP VAL LEU ILE GLY LEU ASP MET LEU LYS ARG SEQRES 10 A 146 HIS LEU ALA CYS VAL ASP LEU LYS GLU ASN VAL LEU ARG SEQRES 11 A 146 ILE ALA GLU VAL GLU THR SER PHE LEU SER GLU ALA GLU SEQRES 12 A 146 ILE PRO LYS SEQRES 1 B 146 GLY PRO LEU GLY SER GLU GLN LEU ARG ASN ALA ILE GLU SEQRES 2 B 146 TYR THR PRO GLU MET PHE THR GLN VAL PRO MET LEU TYR SEQRES 3 B 146 ILE ASN ILE GLU ILE ASN ASN TYR PRO VAL LYS ALA PHE SEQRES 4 B 146 VAL ASP THR GLY ALA GLN THR THR ILE MET SER THR ARG SEQRES 5 B 146 LEU ALA LYS LYS THR GLY LEU SER ARG MET ILE ASP LYS SEQRES 6 B 146 ARG PHE ILE GLY GLU ALA ARG GLY VAL GLY THR GLY LYS SEQRES 7 B 146 ILE ILE GLY ARG ILE HIS GLN ALA GLN VAL LYS ILE GLU SEQRES 8 B 146 THR GLN TYR ILE PRO CYS SER PHE THR VAL LEU ASP THR SEQRES 9 B 146 ASP ILE ASP VAL LEU ILE GLY LEU ASP MET LEU LYS ARG SEQRES 10 B 146 HIS LEU ALA CYS VAL ASP LEU LYS GLU ASN VAL LEU ARG SEQRES 11 B 146 ILE ALA GLU VAL GLU THR SER PHE LEU SER GLU ALA GLU SEQRES 12 B 146 ILE PRO LYS FORMUL 3 HOH *149(H2 O) HELIX 1 AA1 THR A 230 THR A 236 1 7 HELIX 2 AA2 LEU A 238 ARG A 240 5 3 HELIX 3 AA3 GLY A 290 HIS A 297 1 8 HELIX 4 AA4 SER A 319 ILE A 323 5 5 HELIX 5 AA5 THR B 230 THR B 236 1 7 HELIX 6 AA6 LEU B 238 ILE B 242 5 5 HELIX 7 AA7 LEU B 291 HIS B 297 1 7 SHEET 1 AA1 8 ILE A 242 ASP A 243 0 SHEET 2 AA1 8 GLY A 260 ILE A 269 -1 O ARG A 261 N ASP A 243 SHEET 3 AA1 8 GLN A 272 LEU A 281 -1 O VAL A 280 N GLY A 260 SHEET 4 AA1 8 ILE A 227 SER A 229 1 N MET A 228 O THR A 279 SHEET 5 AA1 8 VAL A 287 ILE A 289 -1 O LEU A 288 N ILE A 227 SHEET 6 AA1 8 TYR A 213 VAL A 219 1 N PHE A 218 O ILE A 289 SHEET 7 AA1 8 TYR A 205 ILE A 210 -1 N ILE A 208 O VAL A 215 SHEET 8 AA1 8 GLY A 260 ILE A 269 -1 O LYS A 268 N GLU A 209 SHEET 1 AA2 6 VAL A 313 SER A 316 0 SHEET 2 AA2 6 VAL A 307 ILE A 310 -1 N LEU A 308 O THR A 315 SHEET 3 AA2 6 CYS A 300 ASP A 302 -1 N CYS A 300 O ARG A 309 SHEET 4 AA2 6 CYS B 300 ASP B 302 -1 O VAL B 301 N VAL A 301 SHEET 5 AA2 6 VAL B 307 ILE B 310 -1 O ARG B 309 N CYS B 300 SHEET 6 AA2 6 VAL B 313 SER B 316 -1 O THR B 315 N LEU B 308 SHEET 1 AA3 7 TYR B 205 ILE B 210 0 SHEET 2 AA3 7 TYR B 213 ASP B 220 -1 O ALA B 217 N ILE B 206 SHEET 3 AA3 7 VAL B 287 GLY B 290 1 O ILE B 289 N PHE B 218 SHEET 4 AA3 7 ILE B 227 SER B 229 -1 N ILE B 227 O LEU B 288 SHEET 5 AA3 7 GLN B 272 LEU B 281 1 O THR B 279 N MET B 228 SHEET 6 AA3 7 GLY B 260 ILE B 269 -1 N ILE B 269 O GLN B 272 SHEET 7 AA3 7 TYR B 205 ILE B 210 -1 N GLU B 209 O LYS B 268 SHEET 1 AA4 2 GLY B 248 GLU B 249 0 SHEET 2 AA4 2 LYS B 257 ILE B 258 -1 O ILE B 258 N GLY B 248 CRYST1 41.515 50.051 131.562 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007601 0.00000