PDB Short entry for 4Z4K HEADER FLURORESCENT PROTEIN, METAL BINDING PROT02-APR-15 4Z4K TITLE CRYSTAL STRUCTURE OF GFP-TAX1BP1 UBZ1+2 DOMAIN FUSION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN,TAX1-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UBZ1 AND UBZ2; COMPND 5 SYNONYM: TRAF6-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: JELLYFISH, HUMAN; SOURCE 4 ORGANISM_TAXID: 6100, 9606; SOURCE 5 GENE: GFP, TAX1BP1, T6BP, PRO0105; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GFP, TAX1BP1, UBZ, ZINC-FINGER, FLURORESCENT PROTEIN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ROHAIM,M.KAWASAKI,S.WAKATSUKI REVDAT 5 15-NOV-23 4Z4K 1 REMARK REVDAT 4 27-SEP-23 4Z4K 1 REMARK SEQADV REVDAT 3 22-JUN-16 4Z4K 1 JRNL REVDAT 2 20-APR-16 4Z4K 1 JRNL REVDAT 1 06-APR-16 4Z4K 0 JRNL AUTH N.SUZUKI,A.ROHAIM,R.KATO,I.DIKIC,S.WAKATSUKI,M.KAWASAKI JRNL TITL A NOVEL MODE OF UBIQUITIN RECOGNITION BY THE JRNL TITL 2 UBIQUITIN-BINDING ZINC FINGER DOMAIN OF WRNIP1. JRNL REF FEBS J. V. 283 2004 2016 JRNL REFN ISSN 1742-464X JRNL PMID 27062441 JRNL DOI 10.1111/FEBS.13734 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 774 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1080 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.55000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : -1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.449 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.345 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.403 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.869 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4706 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4318 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6356 ; 1.701 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9994 ; 3.606 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 557 ; 7.150 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;37.594 ;25.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 793 ;20.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.337 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 659 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5337 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1109 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2246 ; 1.847 ; 2.873 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2245 ; 1.846 ; 2.871 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2797 ; 3.147 ; 4.300 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2798 ; 3.146 ; 4.303 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2460 ; 1.867 ; 3.085 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2461 ; 1.867 ; 3.087 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3560 ; 3.231 ; 4.542 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5072 ; 5.345 ;22.769 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5071 ; 5.339 ;22.781 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 63 B 3 63 2887 0.13 0.05 REMARK 3 2 A 68 289 B 68 289 11524 0.16 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): -28.5886 -2.8568 -2.2059 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0589 REMARK 3 T33: 0.0916 T12: 0.0133 REMARK 3 T13: -0.0018 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.8603 L22: 1.3686 REMARK 3 L33: 0.6989 L12: 0.1081 REMARK 3 L13: 0.3497 L23: -0.0417 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.0891 S13: 0.0121 REMARK 3 S21: 0.0322 S22: -0.0524 S23: 0.0421 REMARK 3 S31: -0.0473 S32: 0.0224 S33: 0.0079 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 289 REMARK 3 ORIGIN FOR THE GROUP (A): -19.9526 12.8655 25.1785 REMARK 3 T TENSOR REMARK 3 T11: 0.3324 T22: 0.0686 REMARK 3 T33: 0.0402 T12: -0.1097 REMARK 3 T13: 0.0308 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.3044 L22: 1.0637 REMARK 3 L33: 1.3967 L12: 0.4347 REMARK 3 L13: 0.3494 L23: 0.5902 REMARK 3 S TENSOR REMARK 3 S11: 0.2600 S12: -0.1782 S13: 0.2098 REMARK 3 S21: 0.4378 S22: -0.2616 S23: 0.0025 REMARK 3 S31: 0.1291 S32: -0.1781 S33: 0.0016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Z4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14819 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M TRIS PH 8.5, 25% W/V PEG 3350., VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.44250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.24800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.66700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.24800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.44250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.66700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 229 REMARK 465 THR A 230 REMARK 465 GLY A 231 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ILE B 229 REMARK 465 THR B 230 REMARK 465 GLY B 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 77 1.08 -67.28 REMARK 500 ASN A 248 74.31 41.05 REMARK 500 ASP A 250 106.90 -57.72 REMARK 500 MET A 267 -75.01 -82.35 REMARK 500 HIS B 77 1.89 -67.42 REMARK 500 LYS B 158 -157.76 -103.86 REMARK 500 ASN B 212 36.42 -89.06 REMARK 500 VAL B 234 -89.97 -111.54 REMARK 500 ASN B 248 77.77 45.76 REMARK 500 MET B 267 -78.78 -85.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 238 SG REMARK 620 2 CYS A 241 SG 112.3 REMARK 620 3 HIS A 257 NE2 112.5 117.5 REMARK 620 4 HIS A 261 NE2 105.4 98.2 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 265 SG REMARK 620 2 CYS A 268 SG 122.1 REMARK 620 3 HIS A 284 NE2 119.6 87.8 REMARK 620 4 HIS A 288 NE2 123.9 97.6 97.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 238 SG REMARK 620 2 CYS B 241 SG 107.4 REMARK 620 3 HIS B 257 NE2 118.7 111.4 REMARK 620 4 HIS B 261 NE2 111.1 95.3 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 265 SG REMARK 620 2 CYS B 268 SG 130.0 REMARK 620 3 HIS B 284 NE2 117.1 93.3 REMARK 620 4 HIS B 288 NE2 105.7 108.6 97.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z4M RELATED DB: PDB DBREF 4Z4K A 1 230 UNP P42212 GFP_AEQVI 1 230 DBREF 4Z4K A 233 289 UNP Q86VP1 TAXB1_HUMAN 725 781 DBREF 4Z4K B 1 230 UNP P42212 GFP_AEQVI 1 230 DBREF 4Z4K B 233 289 UNP Q86VP1 TAXB1_HUMAN 725 781 SEQADV 4Z4K GLY A -2 UNP P42212 EXPRESSION TAG SEQADV 4Z4K SER A -1 UNP P42212 EXPRESSION TAG SEQADV 4Z4K HIS A 0 UNP P42212 EXPRESSION TAG SEQADV 4Z4K CR2 A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 4Z4K CR2 A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 4Z4K CR2 A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4Z4K ALA A 72 UNP P42212 SER 72 ENGINEERED MUTATION SEQADV 4Z4K GLY A 231 UNP P42212 LINKER SEQADV 4Z4K SER A 232 UNP P42212 LINKER SEQADV 4Z4K GLY B -2 UNP P42212 EXPRESSION TAG SEQADV 4Z4K SER B -1 UNP P42212 EXPRESSION TAG SEQADV 4Z4K HIS B 0 UNP P42212 EXPRESSION TAG SEQADV 4Z4K CR2 B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 4Z4K CR2 B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 4Z4K CR2 B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4Z4K ALA B 72 UNP P42212 SER 72 ENGINEERED MUTATION SEQADV 4Z4K GLY B 231 UNP P42212 LINKER SEQADV 4Z4K SER B 232 UNP P42212 LINKER SEQRES 1 A 290 GLY SER HIS MET SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 A 290 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 A 290 GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP SEQRES 4 A 290 ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 A 290 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 A 290 THR PHE CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS SEQRES 7 A 290 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 A 290 GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP SEQRES 9 A 290 GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 A 290 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 A 290 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 A 290 TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP SEQRES 13 A 290 LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG SEQRES 14 A 290 HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 A 290 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 A 290 LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SEQRES 17 A 290 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 A 290 LEU GLU PHE VAL THR ALA ALA GLY ILE THR GLY SER ASP SEQRES 19 A 290 VAL HIS LYS LYS CYS PRO LEU CYS GLU LEU MET PHE PRO SEQRES 20 A 290 PRO ASN TYR ASP GLN SER LYS PHE GLU GLU HIS VAL GLU SEQRES 21 A 290 SER HIS TRP LYS VAL CYS PRO MET CYS SER GLU GLN PHE SEQRES 22 A 290 PRO PRO ASP TYR ASP GLN GLN VAL PHE GLU ARG HIS VAL SEQRES 23 A 290 GLN THR HIS PHE SEQRES 1 B 290 GLY SER HIS MET SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 B 290 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 B 290 GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP SEQRES 4 B 290 ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 B 290 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 B 290 THR PHE CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS SEQRES 7 B 290 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 B 290 GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP SEQRES 9 B 290 GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 B 290 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 B 290 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 B 290 TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP SEQRES 13 B 290 LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG SEQRES 14 B 290 HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 B 290 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 B 290 LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SEQRES 17 B 290 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 B 290 LEU GLU PHE VAL THR ALA ALA GLY ILE THR GLY SER ASP SEQRES 19 B 290 VAL HIS LYS LYS CYS PRO LEU CYS GLU LEU MET PHE PRO SEQRES 20 B 290 PRO ASN TYR ASP GLN SER LYS PHE GLU GLU HIS VAL GLU SEQRES 21 B 290 SER HIS TRP LYS VAL CYS PRO MET CYS SER GLU GLN PHE SEQRES 22 B 290 PRO PRO ASP TYR ASP GLN GLN VAL PHE GLU ARG HIS VAL SEQRES 23 B 290 GLN THR HIS PHE MODRES 4Z4K CR2 A 66 GLY CHROMOPHORE MODRES 4Z4K CR2 B 66 GLY CHROMOPHORE HET CR2 A 66 19 HET CR2 B 66 19 HET ZN A 301 1 HET ZN A 302 1 HET ZN B 301 1 HET ZN B 302 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM ZN ZINC ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) FORMUL 1 CR2 2(C13 H13 N3 O4) FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *58(H2 O) HELIX 1 AA1 LYS A 3 THR A 9 5 7 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 ALA A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 ASP A 250 SER A 260 1 11 HELIX 7 AA7 ASP A 277 THR A 287 1 11 HELIX 8 AA8 HIS A 288 PHE A 289 5 2 HELIX 9 AA9 LYS B 3 THR B 9 5 7 HELIX 10 AB1 PRO B 56 VAL B 61 5 6 HELIX 11 AB2 VAL B 68 ALA B 72 5 5 HELIX 12 AB3 PRO B 75 HIS B 81 5 7 HELIX 13 AB4 ASP B 82 ALA B 87 1 6 HELIX 14 AB5 ASP B 250 SER B 260 1 11 HELIX 15 AB6 GLN B 278 THR B 287 1 10 SHEET 1 AA112 VAL A 12 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O GLY A 33 N ILE A 14 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N GLN A 204 O PHE A 223 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O GLN A 183 N VAL A 163 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 AA112 ASN A 105 GLU A 115 -1 O THR A 108 N ARG A 96 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 12 VAL A 22 1 N ASP A 21 O GLY A 127 SHEET 1 AA2 2 LYS A 236 LYS A 237 0 SHEET 2 AA2 2 MET A 244 PHE A 245 -1 O PHE A 245 N LYS A 236 SHEET 1 AA3 2 LYS A 263 VAL A 264 0 SHEET 2 AA3 2 GLN A 271 PHE A 272 -1 O PHE A 272 N LYS A 263 SHEET 1 AA412 VAL B 11 VAL B 22 0 SHEET 2 AA412 HIS B 25 ASP B 36 -1 O GLY B 33 N ILE B 14 SHEET 3 AA412 LYS B 41 CYS B 48 -1 O LYS B 41 N ASP B 36 SHEET 4 AA412 HIS B 217 ALA B 227 -1 O LEU B 220 N LEU B 44 SHEET 5 AA412 HIS B 199 SER B 208 -1 N GLN B 204 O PHE B 223 SHEET 6 AA412 HIS B 148 ASP B 155 -1 N ILE B 152 O HIS B 199 SHEET 7 AA412 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 AA412 VAL B 176 PRO B 187 -1 O GLN B 183 N VAL B 163 SHEET 9 AA412 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 AA412 ASN B 105 GLU B 115 -1 O THR B 108 N ARG B 96 SHEET 11 AA412 THR B 118 ILE B 128 -1 O VAL B 120 N LYS B 113 SHEET 12 AA412 VAL B 11 VAL B 22 1 N ASP B 21 O GLY B 127 SHEET 1 AA5 2 LYS B 236 LYS B 237 0 SHEET 2 AA5 2 MET B 244 PHE B 245 -1 O PHE B 245 N LYS B 236 SHEET 1 AA6 2 LYS B 263 VAL B 264 0 SHEET 2 AA6 2 GLN B 271 PHE B 272 -1 O PHE B 272 N LYS B 263 LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.28 LINK C3 CR2 A 66 N VAL A 68 1555 1555 1.28 LINK C PHE B 64 N1 CR2 B 66 1555 1555 1.30 LINK C3 CR2 B 66 N VAL B 68 1555 1555 1.29 LINK SG CYS A 238 ZN ZN A 301 1555 1555 2.21 LINK SG CYS A 241 ZN ZN A 301 1555 1555 2.01 LINK NE2 HIS A 257 ZN ZN A 301 1555 1555 2.07 LINK NE2 HIS A 261 ZN ZN A 301 1555 1555 2.16 LINK SG CYS A 265 ZN ZN A 302 1555 1555 2.10 LINK SG CYS A 268 ZN ZN A 302 1555 1555 2.55 LINK NE2 HIS A 284 ZN ZN A 302 1555 1555 2.39 LINK NE2 HIS A 288 ZN ZN A 302 1555 1555 2.09 LINK SG CYS B 238 ZN ZN B 301 1555 1555 2.16 LINK SG CYS B 241 ZN ZN B 301 1555 1555 2.08 LINK NE2 HIS B 257 ZN ZN B 301 1555 1555 2.02 LINK NE2 HIS B 261 ZN ZN B 301 1555 1555 2.11 LINK SG CYS B 265 ZN ZN B 302 1555 1555 2.19 LINK SG CYS B 268 ZN ZN B 302 1555 1555 2.30 LINK NE2 HIS B 284 ZN ZN B 302 1555 1555 2.45 LINK NE2 HIS B 288 ZN ZN B 302 1555 1555 2.11 CISPEP 1 MET A 88 PRO A 89 0 2.74 CISPEP 2 MET B 88 PRO B 89 0 5.00 SITE 1 AC1 4 CYS A 238 CYS A 241 HIS A 257 HIS A 261 SITE 1 AC2 4 CYS A 265 CYS A 268 HIS A 284 HIS A 288 SITE 1 AC3 4 CYS B 238 CYS B 241 HIS B 257 HIS B 261 SITE 1 AC4 4 CYS B 265 CYS B 268 HIS B 284 HIS B 288 CRYST1 56.885 83.334 128.496 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017579 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007782 0.00000