PDB Short entry for 4Z4M HEADER FLURORESCENT PROTEIN, METAL BINDING PROT02-APR-15 4Z4M TITLE CRYSTAL STRUCTURE OF GFP-TAX1BP1 UBZ2 DOMAIN FUSION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN,TAX1-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UBZ2; COMPND 5 SYNONYM: TRAF6-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: JELLYFISH, HUMAN; SOURCE 4 ORGANISM_TAXID: 6100, 9606; SOURCE 5 GENE: GFP, TAX1BP1, T6BP, PRO0105; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GFP, TAX1BP1, UBZ, ZINC-FINGER, FLURORESCENT PROTEIN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ROHAIM,M.KAWASAKI,S.WAKATSUKI REVDAT 5 15-NOV-23 4Z4M 1 REMARK REVDAT 4 27-SEP-23 4Z4M 1 REMARK SEQADV REVDAT 3 22-JUN-16 4Z4M 1 JRNL REVDAT 2 20-APR-16 4Z4M 1 JRNL REVDAT 1 06-APR-16 4Z4M 0 JRNL AUTH N.SUZUKI,A.ROHAIM,R.KATO,I.DIKIC,S.WAKATSUKI,M.KAWASAKI JRNL TITL A NOVEL MODE OF UBIQUITIN RECOGNITION BY THE JRNL TITL 2 UBIQUITIN-BINDING ZINC FINGER DOMAIN OF WRNIP1. JRNL REF FEBS J. V. 283 2004 2016 JRNL REFN ISSN 1742-464X JRNL PMID 27062441 JRNL DOI 10.1111/FEBS.13734 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 28380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2007 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.318 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.260 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4196 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5662 ; 2.042 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 500 ; 7.552 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;36.208 ;25.094 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;18.192 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.521 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7024 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2514 ; 1.005 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4064 ; 1.777 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1682 ; 3.014 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1598 ; 4.660 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7190 34.7470 34.0380 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: 0.2398 REMARK 3 T33: 0.1784 T12: -0.0085 REMARK 3 T13: -0.0017 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.2994 L22: 1.0241 REMARK 3 L33: 1.0299 L12: 0.4117 REMARK 3 L13: 0.2564 L23: 0.0211 REMARK 3 S TENSOR REMARK 3 S11: 0.0716 S12: -0.0794 S13: 0.0021 REMARK 3 S21: 0.0271 S22: -0.0568 S23: -0.0491 REMARK 3 S31: 0.0787 S32: 0.0025 S33: -0.0148 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 235 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6850 73.5030 37.4920 REMARK 3 T TENSOR REMARK 3 T11: 0.0532 T22: 0.3822 REMARK 3 T33: 0.2258 T12: -0.0668 REMARK 3 T13: 0.0111 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 6.8495 L22: 0.8604 REMARK 3 L33: 5.4196 L12: 2.1871 REMARK 3 L13: -3.8349 L23: -0.2465 REMARK 3 S TENSOR REMARK 3 S11: -0.4262 S12: 0.4252 S13: -0.2614 REMARK 3 S21: -0.1450 S22: 0.1799 S23: -0.1428 REMARK 3 S31: 0.3055 S32: -0.4225 S33: 0.2464 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 229 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0350 53.8480 34.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.2306 REMARK 3 T33: 0.1737 T12: 0.0008 REMARK 3 T13: -0.0063 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.6277 L22: 1.0632 REMARK 3 L33: 1.2417 L12: 0.4344 REMARK 3 L13: -0.1039 L23: 0.1932 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: -0.0174 S13: 0.0194 REMARK 3 S21: -0.0728 S22: -0.0098 S23: 0.0549 REMARK 3 S31: -0.0952 S32: 0.0640 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 235 B 261 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9940 15.3860 37.5770 REMARK 3 T TENSOR REMARK 3 T11: 0.0276 T22: 0.3966 REMARK 3 T33: 0.2094 T12: -0.0189 REMARK 3 T13: 0.0039 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 4.9084 L22: 3.0926 REMARK 3 L33: 6.4489 L12: 2.8771 REMARK 3 L13: 2.0970 L23: -1.6682 REMARK 3 S TENSOR REMARK 3 S11: -0.3736 S12: 0.0591 S13: 0.3043 REMARK 3 S21: -0.2615 S22: 0.1652 S23: 0.1709 REMARK 3 S31: -0.0936 S32: -0.4316 S33: 0.2084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Z4M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30758 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 63.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM FLUORIDE, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, PH 7.4, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.86550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.97450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.38650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.97450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.86550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.38650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 THR A 232 REMARK 465 GLY A 233 REMARK 465 SER A 234 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 THR B 232 REMARK 465 GLY B 233 REMARK 465 SER B 234 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 79 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 154 CA ALA A 154 CB 0.157 REMARK 500 GLU B 32 CG GLU B 32 CD -0.096 REMARK 500 PHE B 99 CE1 PHE B 99 CZ 0.121 REMARK 500 ALA B 154 CA ALA B 154 CB 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 215 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 215 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -159.00 -156.19 REMARK 500 ILE A 136 -68.97 -98.69 REMARK 500 ASP A 173 -2.26 -56.50 REMARK 500 SER A 241 11.97 57.18 REMARK 500 ILE B 136 -67.19 -96.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 237 SG REMARK 620 2 CYS A 240 SG 112.1 REMARK 620 3 HIS A 256 NE2 97.3 110.7 REMARK 620 4 HIS A 260 NE2 108.5 117.6 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 237 SG REMARK 620 2 CYS B 240 SG 110.7 REMARK 620 3 HIS B 256 NE2 100.5 112.4 REMARK 620 4 HIS B 260 NE2 106.5 115.7 109.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z4K RELATED DB: PDB DBREF 4Z4M A 1 232 UNP P42212 GFP_AEQVI 1 230 DBREF 4Z4M A 235 261 UNP Q86VP1 TAXB1_HUMAN 755 781 DBREF 4Z4M B 1 232 UNP P42212 GFP_AEQVI 1 230 DBREF 4Z4M B 235 261 UNP Q86VP1 TAXB1_HUMAN 755 781 SEQADV 4Z4M GLY A -2 UNP P42212 EXPRESSION TAG SEQADV 4Z4M SER A -1 UNP P42212 EXPRESSION TAG SEQADV 4Z4M HIS A 0 UNP P42212 EXPRESSION TAG SEQADV 4Z4M CR2 A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 4Z4M CR2 A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 4Z4M CR2 A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4Z4M ALA A 72 UNP P42212 SER 72 ENGINEERED MUTATION SEQADV 4Z4M GLY A 233 UNP P42212 LINKER SEQADV 4Z4M SER A 234 UNP P42212 LINKER SEQADV 4Z4M GLY B -2 UNP P42212 EXPRESSION TAG SEQADV 4Z4M SER B -1 UNP P42212 EXPRESSION TAG SEQADV 4Z4M HIS B 0 UNP P42212 EXPRESSION TAG SEQADV 4Z4M CR2 B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 4Z4M CR2 B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 4Z4M CR2 B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4Z4M ALA B 72 UNP P42212 SER 72 ENGINEERED MUTATION SEQADV 4Z4M GLY B 233 UNP P42212 LINKER SEQADV 4Z4M SER B 234 UNP P42212 LINKER SEQRES 1 A 260 GLY SER HIS MET SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 A 260 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 A 260 GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP SEQRES 4 A 260 ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 A 260 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 A 260 THR PHE CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS SEQRES 7 A 260 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 A 260 GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP SEQRES 9 A 260 GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 A 260 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 A 260 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 A 260 TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP SEQRES 13 A 260 LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG SEQRES 14 A 260 HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 A 260 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 A 260 LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SEQRES 17 A 260 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 A 260 LEU GLU PHE VAL THR ALA ALA GLY ILE THR GLY SER LYS SEQRES 19 A 260 VAL CYS PRO MET CYS SER GLU GLN PHE PRO PRO ASP TYR SEQRES 20 A 260 ASP GLN GLN VAL PHE GLU ARG HIS VAL GLN THR HIS PHE SEQRES 1 B 260 GLY SER HIS MET SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 B 260 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 B 260 GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP SEQRES 4 B 260 ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 B 260 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 B 260 THR PHE CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS SEQRES 7 B 260 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 B 260 GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP SEQRES 9 B 260 GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 B 260 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 B 260 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 B 260 TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP SEQRES 13 B 260 LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG SEQRES 14 B 260 HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 B 260 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 B 260 LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SEQRES 17 B 260 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 B 260 LEU GLU PHE VAL THR ALA ALA GLY ILE THR GLY SER LYS SEQRES 19 B 260 VAL CYS PRO MET CYS SER GLU GLN PHE PRO PRO ASP TYR SEQRES 20 B 260 ASP GLN GLN VAL PHE GLU ARG HIS VAL GLN THR HIS PHE MODRES 4Z4M CR2 A 66 GLY CHROMOPHORE MODRES 4Z4M CR2 B 66 GLY CHROMOPHORE HET CR2 A 66 19 HET CR2 B 66 19 HET ZN A 301 1 HET ZN B 301 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM ZN ZINC ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) FORMUL 1 CR2 2(C13 H13 N3 O4) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *175(H2 O) HELIX 1 AA1 LYS A 3 THR A 9 5 7 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 ALA A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 LYS A 156 ASN A 159 5 4 HELIX 7 AA7 ASP A 249 THR A 259 1 11 HELIX 8 AA8 LYS B 3 THR B 9 5 7 HELIX 9 AA9 PRO B 56 VAL B 61 5 6 HELIX 10 AB1 VAL B 68 ALA B 72 5 5 HELIX 11 AB2 PRO B 75 HIS B 81 5 7 HELIX 12 AB3 ASP B 82 ALA B 87 1 6 HELIX 13 AB4 LYS B 156 ASN B 159 5 4 HELIX 14 AB5 ASP B 249 THR B 259 1 11 SHEET 1 AA112 VAL A 12 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N ALA A 206 O LEU A 221 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O GLN A 177 N HIS A 169 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N GLU A 95 O GLN A 184 SHEET 10 AA112 ASN A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 AA112 THR A 118 ILE A 128 -1 O THR A 118 N GLU A 115 SHEET 12 AA112 VAL A 12 VAL A 22 1 N ASP A 21 O GLY A 127 SHEET 1 AA212 VAL B 12 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O PHE B 27 N GLY B 20 SHEET 3 AA212 LYS B 41 CYS B 48 -1 O THR B 43 N GLU B 34 SHEET 4 AA212 HIS B 217 ALA B 227 -1 O LEU B 220 N LEU B 44 SHEET 5 AA212 HIS B 199 SER B 208 -1 N SER B 208 O VAL B 219 SHEET 6 AA212 HIS B 148 ASP B 155 -1 N ILE B 152 O HIS B 199 SHEET 7 AA212 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 AA212 VAL B 176 PRO B 187 -1 O GLN B 183 N VAL B 163 SHEET 9 AA212 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 AA212 ASN B 105 GLU B 115 -1 O TYR B 106 N ILE B 98 SHEET 11 AA212 THR B 118 ILE B 128 -1 O LYS B 126 N LYS B 107 SHEET 12 AA212 VAL B 12 VAL B 22 1 N GLU B 17 O ILE B 123 LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.24 LINK C3 CR2 A 66 N VAL A 68 1555 1555 1.28 LINK C PHE B 64 N1 CR2 B 66 1555 1555 1.22 LINK C3 CR2 B 66 N VAL B 68 1555 1555 1.30 LINK SG CYS A 237 ZN ZN A 301 1555 1555 2.36 LINK SG CYS A 240 ZN ZN A 301 1555 1555 2.24 LINK NE2 HIS A 256 ZN ZN A 301 1555 1555 2.06 LINK NE2 HIS A 260 ZN ZN A 301 1555 1555 1.94 LINK SG CYS B 237 ZN ZN B 301 1555 1555 2.35 LINK SG CYS B 240 ZN ZN B 301 1555 1555 2.22 LINK NE2 HIS B 256 ZN ZN B 301 1555 1555 1.99 LINK NE2 HIS B 260 ZN ZN B 301 1555 1555 2.00 CISPEP 1 MET A 88 PRO A 89 0 -0.85 CISPEP 2 MET B 88 PRO B 89 0 8.34 SITE 1 AC1 4 CYS A 237 CYS A 240 HIS A 256 HIS A 260 SITE 1 AC2 4 CYS B 237 CYS B 240 HIS B 256 HIS B 260 CRYST1 67.731 88.773 91.949 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014764 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010876 0.00000