PDB Short entry for 4Z51 HEADER HYDROLASE 02-APR-15 4Z51 TITLE HIGH RESOLUTION HUMAN SEPTIN 3 GTPASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURONAL-SPECIFIC SEPTIN-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 60-330; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SEPT3, SEP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GTPASE, SEPTIN, CYTOSKELETON, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.F.VALADARES,J.N.MACEDO,D.A.LEONARDO,J.BRANDAO-NETO,H.M.PEREIRA, AUTHOR 2 S.O.MATOS,A.P.U.ARAUJO,R.C.GARRATT REVDAT 5 27-SEP-23 4Z51 1 LINK REVDAT 4 13-MAY-20 4Z51 1 JRNL REVDAT 3 22-APR-20 4Z51 1 JRNL REVDAT 2 01-NOV-17 4Z51 1 REMARK REVDAT 1 06-APR-16 4Z51 0 JRNL AUTH D.K.S.V.CASTRO,S.M.O.DA SILVA,H.M.PEREIRA,J.N.A.MACEDO, JRNL AUTH 2 D.A.LEONARDO,N.F.VALADARES,P.S.KUMAGAI,J.BRANDAO-NETO, JRNL AUTH 3 A.P.U.ARAUJO,R.C.GARRATT JRNL TITL A COMPLETE COMPENDIUM OF CRYSTAL STRUCTURES FOR THE HUMAN JRNL TITL 2 SEPT3 SUBGROUP REVEALS FUNCTIONAL PLASTICITY AT A SPECIFIC JRNL TITL 3 SEPTIN INTERFACE JRNL REF IUCRJ 2020 JRNL REFN ESSN 2052-2525 JRNL DOI 10.1107/S2052252520002973 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 23469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 75.1780 - 3.8689 0.98 2530 130 0.1618 0.1832 REMARK 3 2 3.8689 - 3.0708 0.99 2468 154 0.1725 0.2078 REMARK 3 3 3.0708 - 2.6826 0.99 2464 141 0.1933 0.2407 REMARK 3 4 2.6826 - 2.4373 0.98 2463 130 0.1929 0.2333 REMARK 3 5 2.4373 - 2.2626 0.99 2462 104 0.1919 0.2388 REMARK 3 6 2.2626 - 2.1292 0.98 2447 140 0.2054 0.2466 REMARK 3 7 2.1292 - 2.0226 0.99 2509 132 0.2103 0.2456 REMARK 3 8 2.0226 - 1.9345 1.00 2456 142 0.2211 0.2716 REMARK 3 9 1.9345 - 1.8600 0.99 2465 132 0.2247 0.2572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2082 REMARK 3 ANGLE : 0.820 2825 REMARK 3 CHIRALITY : 0.031 318 REMARK 3 PLANARITY : 0.004 360 REMARK 3 DIHEDRAL : 14.112 768 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7264 37.4873 23.4328 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.3090 REMARK 3 T33: 0.3190 T12: 0.0242 REMARK 3 T13: 0.0135 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 3.0559 L22: 3.6250 REMARK 3 L33: 7.0171 L12: -0.0818 REMARK 3 L13: 1.1778 L23: -0.8224 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: 0.3213 S13: 0.3725 REMARK 3 S21: -0.1393 S22: -0.1661 S23: 0.2863 REMARK 3 S31: 0.0478 S32: -0.3800 S33: 0.0591 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5971 21.2738 33.0068 REMARK 3 T TENSOR REMARK 3 T11: 0.7140 T22: 0.3651 REMARK 3 T33: 0.4667 T12: 0.0312 REMARK 3 T13: -0.0626 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 5.7659 L22: 2.8058 REMARK 3 L33: 5.4202 L12: -3.1631 REMARK 3 L13: 5.5458 L23: -3.3484 REMARK 3 S TENSOR REMARK 3 S11: 0.7735 S12: -0.1826 S13: -0.2713 REMARK 3 S21: -0.5837 S22: -0.1839 S23: -0.4209 REMARK 3 S31: 1.1297 S32: 0.2108 S33: -0.5388 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4857 20.1790 14.7263 REMARK 3 T TENSOR REMARK 3 T11: 0.6013 T22: 0.3977 REMARK 3 T33: 0.3052 T12: -0.0371 REMARK 3 T13: -0.0440 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 4.4829 L22: 2.8500 REMARK 3 L33: 8.1284 L12: 1.8857 REMARK 3 L13: 1.8614 L23: 1.4877 REMARK 3 S TENSOR REMARK 3 S11: 0.3654 S12: 0.4153 S13: -0.4137 REMARK 3 S21: -0.1507 S22: -0.0811 S23: -0.1997 REMARK 3 S31: 1.2447 S32: -0.2934 S33: -0.2503 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0026 29.8371 20.1931 REMARK 3 T TENSOR REMARK 3 T11: 0.3079 T22: 0.2460 REMARK 3 T33: 0.2141 T12: 0.0465 REMARK 3 T13: 0.0101 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.0459 L22: 1.1165 REMARK 3 L33: 3.4102 L12: 0.9839 REMARK 3 L13: 1.1582 L23: 0.7748 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: 0.2881 S13: -0.0504 REMARK 3 S21: -0.1271 S22: 0.0312 S23: -0.0064 REMARK 3 S31: 0.4764 S32: 0.1164 S33: -0.1527 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2505 34.4517 19.6217 REMARK 3 T TENSOR REMARK 3 T11: 0.2609 T22: 0.4454 REMARK 3 T33: 0.2448 T12: 0.1035 REMARK 3 T13: 0.0577 T23: 0.0601 REMARK 3 L TENSOR REMARK 3 L11: 3.5903 L22: 3.5771 REMARK 3 L33: 2.5875 L12: -0.1825 REMARK 3 L13: -0.1250 L23: 1.1448 REMARK 3 S TENSOR REMARK 3 S11: 0.2114 S12: 0.7596 S13: 0.0447 REMARK 3 S21: -0.0766 S22: -0.1268 S23: -0.1610 REMARK 3 S31: 0.1144 S32: 0.3908 S33: -0.0717 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2582 48.0396 23.6357 REMARK 3 T TENSOR REMARK 3 T11: 0.2133 T22: 0.2562 REMARK 3 T33: 0.3347 T12: -0.0006 REMARK 3 T13: 0.0137 T23: 0.0710 REMARK 3 L TENSOR REMARK 3 L11: 2.3228 L22: 3.7719 REMARK 3 L33: 2.5592 L12: -1.5047 REMARK 3 L13: 0.2618 L23: 0.8274 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.2680 S13: 0.2122 REMARK 3 S21: -0.3700 S22: -0.1208 S23: 0.0377 REMARK 3 S31: -0.2983 S32: 0.1436 S33: 0.1581 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1880 48.1599 22.3115 REMARK 3 T TENSOR REMARK 3 T11: 0.2979 T22: 0.2868 REMARK 3 T33: 0.3759 T12: 0.0528 REMARK 3 T13: 0.0586 T23: 0.1164 REMARK 3 L TENSOR REMARK 3 L11: 1.3996 L22: 4.5962 REMARK 3 L33: 6.7421 L12: -0.3909 REMARK 3 L13: -0.2379 L23: 4.1884 REMARK 3 S TENSOR REMARK 3 S11: 0.2686 S12: 0.2450 S13: 0.3773 REMARK 3 S21: -0.6533 S22: 0.0524 S23: -0.1576 REMARK 3 S31: -0.7566 S32: -0.1596 S33: -0.0710 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 309 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2460 24.4275 6.6246 REMARK 3 T TENSOR REMARK 3 T11: 0.4671 T22: 0.5054 REMARK 3 T33: 0.2329 T12: 0.1242 REMARK 3 T13: -0.0293 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 4.2870 L22: 7.8924 REMARK 3 L33: 6.4418 L12: 1.1664 REMARK 3 L13: -1.0111 L23: 2.4654 REMARK 3 S TENSOR REMARK 3 S11: -0.3813 S12: 0.6589 S13: -0.3517 REMARK 3 S21: -1.1082 S22: 0.3062 S23: 0.1141 REMARK 3 S31: 0.6016 S32: 0.0902 S33: 0.0951 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000207885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23470 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 75.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SOP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MAGNESIUM ACETATE, 10MM SODIUM REMARK 280 ACETATE, 15% PEG8000, PH 7.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 25.64000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 25.64000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER CONFIRMED BY GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 598 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 86 REMARK 465 SER A 87 REMARK 465 ARG A 88 REMARK 465 LYS A 89 REMARK 465 ALA A 90 REMARK 465 SER A 91 REMARK 465 SER A 92 REMARK 465 TRP A 93 REMARK 465 GLU A 113 REMARK 465 GLU A 114 REMARK 465 GLY A 115 REMARK 465 GLY A 116 REMARK 465 GLU A 243 REMARK 465 ASP A 244 REMARK 465 LEU A 245 REMARK 465 GLU A 246 REMARK 465 LEU A 329 REMARK 465 ASN A 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 VAL A 117 CG1 CG2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 144 CD CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 186 CZ NH1 NH2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 198 CE NZ REMARK 470 LEU A 214 CG CD1 CD2 REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 ASP A 242 CG OD1 OD2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 ASP A 252 CG OD1 OD2 REMARK 470 LYS A 253 CD CE NZ REMARK 470 LYS A 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 191 NH1 ARG A 276 3545 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 129 -169.09 -114.02 REMARK 500 VAL A 158 77.39 -66.47 REMARK 500 ASN A 159 66.12 -67.92 REMARK 500 GLU A 257 -51.48 -127.38 REMARK 500 SER A 266 134.80 -171.98 REMARK 500 ILE A 319 -65.79 -108.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 647 DISTANCE = 7.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 75 OG REMARK 620 2 THR A 102 OG1 79.5 REMARK 620 3 GNP A 401 O2G 169.0 90.4 REMARK 620 4 GNP A 401 O1B 92.8 172.3 97.3 REMARK 620 5 HOH A 547 O 83.9 91.4 92.0 87.9 REMARK 620 6 HOH A 562 O 85.7 88.5 98.6 90.8 169.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SOP RELATED DB: PDB DBREF 4Z51 A 60 330 UNP Q9UH03 SEPT3_HUMAN 60 330 SEQRES 1 A 271 PHE ASP PHE ASN ILE MET VAL VAL GLY GLN SER GLY LEU SEQRES 2 A 271 GLY LYS SER THR LEU VAL ASN THR LEU PHE LYS SER GLN SEQRES 3 A 271 VAL SER ARG LYS ALA SER SER TRP ASN ARG GLU GLU LYS SEQRES 4 A 271 ILE PRO LYS THR VAL GLU ILE LYS ALA ILE GLY HIS VAL SEQRES 5 A 271 ILE GLU GLU GLY GLY VAL LYS MET LYS LEU THR VAL ILE SEQRES 6 A 271 ASP THR PRO GLY PHE GLY ASP GLN ILE ASN ASN GLU ASN SEQRES 7 A 271 CYS TRP GLU PRO ILE GLU LYS TYR ILE ASN GLU GLN TYR SEQRES 8 A 271 GLU LYS PHE LEU LYS GLU GLU VAL ASN ILE ALA ARG LYS SEQRES 9 A 271 LYS ARG ILE PRO ASP THR ARG VAL HIS CYS CYS LEU TYR SEQRES 10 A 271 PHE ILE SER PRO THR GLY HIS SER LEU ARG PRO LEU ASP SEQRES 11 A 271 LEU GLU PHE MET LYS HIS LEU SER LYS VAL VAL ASN ILE SEQRES 12 A 271 ILE PRO VAL ILE ALA LYS ALA ASP THR MET THR LEU GLU SEQRES 13 A 271 GLU LYS SER GLU PHE LYS GLN ARG VAL ARG LYS GLU LEU SEQRES 14 A 271 GLU VAL ASN GLY ILE GLU PHE TYR PRO GLN LYS GLU PHE SEQRES 15 A 271 ASP GLU ASP LEU GLU ASP LYS THR GLU ASN ASP LYS ILE SEQRES 16 A 271 ARG GLN GLU SER MET PRO PHE ALA VAL VAL GLY SER ASP SEQRES 17 A 271 LYS GLU TYR GLN VAL ASN GLY LYS ARG VAL LEU GLY ARG SEQRES 18 A 271 LYS THR PRO TRP GLY ILE ILE GLU VAL GLU ASN LEU ASN SEQRES 19 A 271 HIS CYS GLU PHE ALA LEU LEU ARG ASP PHE VAL ILE ARG SEQRES 20 A 271 THR HIS LEU GLN ASP LEU LYS GLU VAL THR HIS ASN ILE SEQRES 21 A 271 HIS TYR GLU THR TYR ARG ALA LYS ARG LEU ASN HET GNP A 401 32 HET MG A 402 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *147(H2 O) HELIX 1 AA1 GLY A 73 SER A 84 1 12 HELIX 2 AA2 TRP A 139 VAL A 158 1 20 HELIX 3 AA3 ARG A 186 LYS A 198 1 13 HELIX 4 AA4 LYS A 208 MET A 212 5 5 HELIX 5 AA5 THR A 213 ASN A 231 1 19 HELIX 6 AA6 GLN A 238 ASP A 242 5 5 HELIX 7 AA7 LYS A 248 GLU A 257 1 10 HELIX 8 AA8 GLU A 296 ARG A 306 1 11 HELIX 9 AA9 HIS A 308 ILE A 319 1 12 HELIX 10 AB1 ILE A 319 ARG A 328 1 10 SHEET 1 AA1 6 LYS A 106 ILE A 112 0 SHEET 2 AA1 6 MET A 119 ASP A 125 -1 O MET A 119 N ILE A 112 SHEET 3 AA1 6 ASP A 61 GLY A 68 1 N ILE A 64 O ILE A 124 SHEET 4 AA1 6 CYS A 173 ILE A 178 1 O LEU A 175 N MET A 65 SHEET 5 AA1 6 ILE A 202 ILE A 206 1 O VAL A 205 N ILE A 178 SHEET 6 AA1 6 PHE A 261 ALA A 262 1 O PHE A 261 N ILE A 206 SHEET 1 AA2 3 GLU A 269 VAL A 272 0 SHEET 2 AA2 3 LYS A 275 THR A 282 -1 O VAL A 277 N TYR A 270 SHEET 3 AA2 3 GLY A 285 GLU A 288 -1 O ILE A 287 N ARG A 280 LINK OG SER A 75 MG MG A 402 1555 1555 2.15 LINK OG1 THR A 102 MG MG A 402 1555 1555 2.12 LINK O2G GNP A 401 MG MG A 402 1555 1555 2.03 LINK O1B GNP A 401 MG MG A 402 1555 1555 2.03 LINK MG MG A 402 O HOH A 547 1555 1555 2.18 LINK MG MG A 402 O HOH A 562 1555 1555 2.11 CISPEP 1 TYR A 236 PRO A 237 0 1.04 CISPEP 2 MET A 259 PRO A 260 0 -2.39 SITE 1 AC1 27 SER A 70 GLY A 71 LEU A 72 GLY A 73 SITE 2 AC1 27 LYS A 74 SER A 75 THR A 76 LYS A 101 SITE 3 AC1 27 THR A 102 GLY A 128 THR A 181 HIS A 183 SITE 4 AC1 27 LYS A 208 ASP A 210 THR A 211 GLU A 216 SITE 5 AC1 27 VAL A 264 GLY A 265 ARG A 280 MG A 402 SITE 6 AC1 27 HOH A 518 HOH A 536 HOH A 547 HOH A 549 SITE 7 AC1 27 HOH A 562 HOH A 578 HOH A 582 SITE 1 AC2 5 SER A 75 THR A 102 GNP A 401 HOH A 547 SITE 2 AC2 5 HOH A 562 CRYST1 51.280 74.270 79.210 90.00 108.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019501 0.000000 0.006525 0.00000 SCALE2 0.000000 0.013464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013313 0.00000