PDB Short entry for 4ZBN HEADER IMMUNE SYSTEM/DNA 15-APR-15 4ZBN TITLE NON-HELICAL DNA TRIPLEX FORMS A UNIQUE APTAMER SCAFFOLD FOR HIGH TITLE 2 AFFINITY RECOGNITION OF NERVE GROWTH FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (28-MER); COMPND 3 CHAIN: D, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-NERVE GROWTH FACTOR; COMPND 7 CHAIN: A, B; COMPND 8 SYNONYM: BETA-NGF; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: NGF, NGFB; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, APTAMER, IMMUNE SYSTEM-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.R.DAVIES,T.E.EDWARDS REVDAT 3 15-JUL-15 4ZBN 1 JRNL REVDAT 2 17-JUN-15 4ZBN 1 JRNL REVDAT 1 10-JUN-15 4ZBN 0 JRNL AUTH T.C.JARVIS,D.R.DAVIES,A.HISAMINATO,D.I.RESNICOW,S.GUPTA, JRNL AUTH 2 S.M.WAUGH,A.NAGABUKURO,T.WADATSU,H.HISHIGAKI,B.GAWANDE, JRNL AUTH 3 C.ZHANG,S.K.WOLK,W.S.MAYFIELD,Y.NAKAISHI,A.B.BURGIN, JRNL AUTH 4 L.J.STEWART,T.E.EDWARDS,A.D.GELINAS,D.J.SCHNEIDER,N.JANJIC JRNL TITL NON-HELICAL DNA TRIPLEX FORMS A UNIQUE APTAMER SCAFFOLD FOR JRNL TITL 2 HIGH AFFINITY RECOGNITION OF NERVE GROWTH FACTOR. JRNL REF STRUCTURE V. 23 1293 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26027732 JRNL DOI 10.1016/J.STR.2015.03.027 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 15532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 824 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 970 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.15 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1506 REMARK 3 NUCLEIC ACID ATOMS : 1320 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.429 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.277 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3055 ; 0.013 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4274 ; 2.112 ; 1.857 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 194 ; 8.219 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;27.225 ;22.424 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 243 ;16.097 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.219 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.168 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1974 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 783 ; 2.558 ; 3.260 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 967 ; 3.971 ; 4.855 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2272 ; 3.125 ; 3.210 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4972 ; 7.427 ;29.402 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8233 -0.5409 12.3699 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.0917 REMARK 3 T33: 0.0681 T12: 0.0334 REMARK 3 T13: 0.0283 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.9313 L22: 2.9978 REMARK 3 L33: 3.2203 L12: 1.2231 REMARK 3 L13: 0.2150 L23: -0.0354 REMARK 3 S TENSOR REMARK 3 S11: 0.1380 S12: 0.0431 S13: 0.3640 REMARK 3 S21: -0.0240 S22: -0.1919 S23: 0.3247 REMARK 3 S31: -0.3619 S32: -0.2808 S33: 0.0539 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6930 -12.2527 3.7944 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1411 REMARK 3 T33: 0.1277 T12: -0.0411 REMARK 3 T13: -0.0530 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 10.9351 L22: 3.1946 REMARK 3 L33: 6.4275 L12: 3.5472 REMARK 3 L13: -3.8525 L23: -1.1295 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: 0.4655 S13: 0.0593 REMARK 3 S21: -0.2978 S22: 0.2450 S23: 0.3827 REMARK 3 S31: 0.2517 S32: -0.7259 S33: -0.3122 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0804 7.9916 18.7060 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.2325 REMARK 3 T33: 0.2097 T12: -0.1083 REMARK 3 T13: 0.0568 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 6.1493 L22: 2.3822 REMARK 3 L33: 1.9704 L12: 2.5259 REMARK 3 L13: 2.4359 L23: 1.8360 REMARK 3 S TENSOR REMARK 3 S11: -0.3984 S12: 0.2935 S13: 0.8608 REMARK 3 S21: -0.2309 S22: 0.1685 S23: 0.3637 REMARK 3 S31: -0.4434 S32: 0.4316 S33: 0.2298 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9039 -2.3780 9.1516 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.1790 REMARK 3 T33: 0.0278 T12: 0.0284 REMARK 3 T13: 0.0000 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.7199 L22: 5.3970 REMARK 3 L33: 3.7735 L12: 3.2289 REMARK 3 L13: 1.7308 L23: 3.0550 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.3401 S13: 0.0146 REMARK 3 S21: -0.1550 S22: -0.0642 S23: 0.0532 REMARK 3 S31: -0.0386 S32: 0.0842 S33: 0.0755 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4178 -13.4620 0.4902 REMARK 3 T TENSOR REMARK 3 T11: 0.3014 T22: 0.3217 REMARK 3 T33: 0.1275 T12: 0.0442 REMARK 3 T13: 0.0360 T23: -0.0712 REMARK 3 L TENSOR REMARK 3 L11: 6.0857 L22: 5.4272 REMARK 3 L33: 11.4370 L12: 2.0472 REMARK 3 L13: 7.4812 L23: 5.7236 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: 0.5423 S13: -0.0497 REMARK 3 S21: -0.4446 S22: -0.1563 S23: 0.3562 REMARK 3 S31: -0.2735 S32: 0.3732 S33: 0.2409 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1103 4.0268 15.4967 REMARK 3 T TENSOR REMARK 3 T11: 0.2240 T22: 0.2711 REMARK 3 T33: 0.1321 T12: -0.0133 REMARK 3 T13: -0.0322 T23: 0.0791 REMARK 3 L TENSOR REMARK 3 L11: 4.0970 L22: 8.7684 REMARK 3 L33: 2.4479 L12: 3.1607 REMARK 3 L13: 1.7719 L23: 4.4365 REMARK 3 S TENSOR REMARK 3 S11: -0.1372 S12: 0.1409 S13: 0.3688 REMARK 3 S21: 0.0720 S22: 0.0821 S23: 0.1441 REMARK 3 S31: -0.0250 S32: 0.1615 S33: 0.0551 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3386 3.5079 8.6129 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.2899 REMARK 3 T33: 0.2302 T12: 0.0013 REMARK 3 T13: -0.0460 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 12.3439 L22: 9.0514 REMARK 3 L33: 1.1414 L12: -1.5108 REMARK 3 L13: -3.7466 L23: 0.5524 REMARK 3 S TENSOR REMARK 3 S11: 0.5908 S12: 0.4326 S13: 0.6331 REMARK 3 S21: -0.8723 S22: -0.3764 S23: 0.1695 REMARK 3 S31: -0.1829 S32: -0.1266 S33: -0.2143 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 25 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3939 -8.3863 16.4666 REMARK 3 T TENSOR REMARK 3 T11: 0.1551 T22: 0.1635 REMARK 3 T33: 0.1097 T12: 0.1022 REMARK 3 T13: -0.0595 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 6.7215 L22: 6.1293 REMARK 3 L33: 2.2861 L12: 3.9769 REMARK 3 L13: -0.4577 L23: 1.0713 REMARK 3 S TENSOR REMARK 3 S11: 0.2727 S12: -0.1199 S13: -0.6852 REMARK 3 S21: 0.4768 S22: -0.1595 S23: -0.7911 REMARK 3 S31: 0.2726 S32: 0.3790 S33: -0.1132 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 52 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5889 -21.6176 16.4329 REMARK 3 T TENSOR REMARK 3 T11: 0.3553 T22: 0.0836 REMARK 3 T33: 0.2741 T12: -0.1199 REMARK 3 T13: -0.2192 T23: 0.1076 REMARK 3 L TENSOR REMARK 3 L11: 5.5628 L22: 6.2909 REMARK 3 L33: 7.3578 L12: -1.9481 REMARK 3 L13: -3.4823 L23: -0.4194 REMARK 3 S TENSOR REMARK 3 S11: 0.3317 S12: -0.2423 S13: -0.6999 REMARK 3 S21: -0.3612 S22: -0.0904 S23: -0.1811 REMARK 3 S31: 1.0667 S32: -0.2519 S33: -0.2413 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 53 B 78 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6577 -0.1495 25.5396 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.2680 REMARK 3 T33: 0.0224 T12: -0.0408 REMARK 3 T13: -0.0454 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 4.8108 L22: 8.5950 REMARK 3 L33: 3.3488 L12: 5.4408 REMARK 3 L13: 2.1644 L23: 2.9640 REMARK 3 S TENSOR REMARK 3 S11: 0.6338 S12: -0.6638 S13: -0.0451 REMARK 3 S21: 1.2879 S22: -0.5558 S23: -0.2528 REMARK 3 S31: 0.4870 S32: 0.2938 S33: -0.0780 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2156 -12.6606 19.6878 REMARK 3 T TENSOR REMARK 3 T11: 0.1827 T22: 0.1203 REMARK 3 T33: 0.0919 T12: -0.0051 REMARK 3 T13: 0.0210 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 10.3559 L22: 6.7387 REMARK 3 L33: 3.8397 L12: 6.5363 REMARK 3 L13: 4.1278 L23: 3.1532 REMARK 3 S TENSOR REMARK 3 S11: 0.4460 S12: 0.0526 S13: -0.4567 REMARK 3 S21: 0.6109 S22: -0.1705 S23: 0.0743 REMARK 3 S31: 0.4394 S32: 0.0046 S33: -0.2756 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 100 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6160 -5.8952 22.9973 REMARK 3 T TENSOR REMARK 3 T11: 0.3154 T22: 0.2128 REMARK 3 T33: 0.0257 T12: -0.0891 REMARK 3 T13: 0.0310 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 6.9807 L22: 10.0216 REMARK 3 L33: 2.5374 L12: 5.7580 REMARK 3 L13: 3.6869 L23: 4.5669 REMARK 3 S TENSOR REMARK 3 S11: 0.4841 S12: -0.6782 S13: -0.2730 REMARK 3 S21: 0.7227 S22: -0.3765 S23: -0.0800 REMARK 3 S31: 0.1975 S32: -0.1986 S33: -0.1076 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 8 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4237 4.1671 26.7682 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.3154 REMARK 3 T33: 0.3479 T12: 0.0862 REMARK 3 T13: 0.1028 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 5.6458 L22: 12.4488 REMARK 3 L33: 1.7314 L12: 6.5121 REMARK 3 L13: -0.3287 L23: -0.2624 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: -0.3255 S13: 0.9499 REMARK 3 S21: -0.7248 S22: -0.0101 S23: 1.0043 REMARK 3 S31: -0.3735 S32: -0.6475 S33: -0.0519 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 9 D 14 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4736 12.7405 23.0958 REMARK 3 T TENSOR REMARK 3 T11: 0.4502 T22: 0.4003 REMARK 3 T33: 0.5549 T12: 0.0606 REMARK 3 T13: 0.1684 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 6.9059 L22: 5.4368 REMARK 3 L33: 2.9897 L12: 4.6598 REMARK 3 L13: 3.7581 L23: 3.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.4136 S12: -0.3519 S13: 1.0890 REMARK 3 S21: -0.2393 S22: 0.0331 S23: 1.0739 REMARK 3 S31: -0.5750 S32: -0.5383 S33: 0.3805 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 15 D 21 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6488 -8.6254 24.2833 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.2271 REMARK 3 T33: 0.1312 T12: -0.0939 REMARK 3 T13: 0.0463 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.7124 L22: 2.7432 REMARK 3 L33: 5.3487 L12: -1.2237 REMARK 3 L13: -0.9933 L23: -0.9531 REMARK 3 S TENSOR REMARK 3 S11: -0.1118 S12: 0.0556 S13: 0.1640 REMARK 3 S21: 0.0938 S22: -0.1012 S23: 0.2743 REMARK 3 S31: 0.1667 S32: 0.0506 S33: 0.2130 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 22 D 28 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4789 7.5754 27.1038 REMARK 3 T TENSOR REMARK 3 T11: 0.2532 T22: 0.2716 REMARK 3 T33: 0.1869 T12: -0.1039 REMARK 3 T13: 0.1684 T23: -0.1687 REMARK 3 L TENSOR REMARK 3 L11: 0.3390 L22: 8.2110 REMARK 3 L33: 2.7699 L12: 1.1932 REMARK 3 L13: 0.4372 L23: -0.2427 REMARK 3 S TENSOR REMARK 3 S11: 0.1993 S12: -0.1650 S13: 0.1155 REMARK 3 S21: 0.4493 S22: -0.1391 S23: 0.0343 REMARK 3 S31: 0.0551 S32: -0.1200 S33: -0.0602 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 5 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6224 -19.2776 -1.2879 REMARK 3 T TENSOR REMARK 3 T11: 0.3749 T22: 0.6143 REMARK 3 T33: 0.4594 T12: 0.1698 REMARK 3 T13: -0.0764 T23: -0.1513 REMARK 3 L TENSOR REMARK 3 L11: 0.7476 L22: 9.1883 REMARK 3 L33: 10.8488 L12: 2.4336 REMARK 3 L13: 1.5621 L23: 7.3431 REMARK 3 S TENSOR REMARK 3 S11: 0.0575 S12: 0.1399 S13: -0.4105 REMARK 3 S21: 0.3378 S22: 0.9831 S23: -1.1213 REMARK 3 S31: 1.0062 S32: 1.1078 S33: -1.0405 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 6 E 9 REMARK 3 ORIGIN FOR THE GROUP (A): 47.6228 -9.4456 15.5038 REMARK 3 T TENSOR REMARK 3 T11: 0.3631 T22: 0.7942 REMARK 3 T33: 0.6751 T12: 0.1894 REMARK 3 T13: -0.1404 T23: 0.1656 REMARK 3 L TENSOR REMARK 3 L11: 3.5329 L22: 11.6694 REMARK 3 L33: 11.4339 L12: 0.2941 REMARK 3 L13: -0.7592 L23: 11.3834 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.2792 S13: -0.1924 REMARK 3 S21: 0.9166 S22: 0.7289 S23: -0.9065 REMARK 3 S31: 0.9475 S32: 0.8733 S33: -0.7625 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 12 E 19 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9599 -17.1041 3.9401 REMARK 3 T TENSOR REMARK 3 T11: 0.3101 T22: 0.2437 REMARK 3 T33: 0.1636 T12: 0.1111 REMARK 3 T13: 0.0013 T23: -0.1324 REMARK 3 L TENSOR REMARK 3 L11: 7.5268 L22: 4.2535 REMARK 3 L33: 2.0593 L12: 4.1471 REMARK 3 L13: 3.3751 L23: 1.8044 REMARK 3 S TENSOR REMARK 3 S11: 0.2590 S12: 0.1907 S13: -0.5362 REMARK 3 S21: 0.1541 S22: 0.1072 S23: -0.1037 REMARK 3 S31: 0.3300 S32: 0.2065 S33: -0.3662 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 20 E 28 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7473 -5.2407 10.5422 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.4286 REMARK 3 T33: 0.2951 T12: 0.0728 REMARK 3 T13: 0.0633 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 2.3261 L22: 1.3352 REMARK 3 L33: 5.0482 L12: 0.8848 REMARK 3 L13: 3.0407 L23: 0.8799 REMARK 3 S TENSOR REMARK 3 S11: -0.3187 S12: 0.2868 S13: -0.0882 REMARK 3 S21: -0.3072 S22: 0.1877 S23: -0.5073 REMARK 3 S31: -0.0733 S32: 0.6000 S33: 0.1310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4ZBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15532 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.447 REMARK 200 RESOLUTION RANGE LOW (A) : 68.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16 % PEG 8000, 100 MM HEPES PH 6.0, REMARK 280 100 MM MAGNESIUM ACETATE AND 20% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.60050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.35400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.60050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.35400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 PRO A 5 REMARK 465 ILE A 6 REMARK 465 PHE A 7 REMARK 465 HIS A 8 REMARK 465 ARG A 9 REMARK 465 GLY A 10 REMARK 465 ASN A 45 REMARK 465 ASN A 46 REMARK 465 PRO A 61 REMARK 465 ASN A 62 REMARK 465 PRO A 63 REMARK 465 VAL A 64 REMARK 465 ASP A 65 REMARK 465 LYS A 115 REMARK 465 ALA A 116 REMARK 465 VAL A 117 REMARK 465 ARG A 118 REMARK 465 ARG A 119 REMARK 465 ALA A 120 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 ILE B 44 REMARK 465 ASN B 45 REMARK 465 ASN B 46 REMARK 465 PRO B 61 REMARK 465 ASN B 62 REMARK 465 PRO B 63 REMARK 465 VAL B 64 REMARK 465 ASP B 65 REMARK 465 ASP B 93 REMARK 465 GLY B 94 REMARK 465 LYS B 95 REMARK 465 GLN B 96 REMARK 465 LYS B 115 REMARK 465 ALA B 116 REMARK 465 VAL B 117 REMARK 465 ARG B 118 REMARK 465 ARG B 119 REMARK 465 ALA B 120 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 GLN A 96 CG CD OE1 NE2 REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 MET B 37 CG SD CE REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DUZ D 3 O3' DG D 4 P -0.098 REMARK 500 DC D 9 P DC D 9 O5' -0.064 REMARK 500 DUZ D 11 O3' DG D 12 P -0.117 REMARK 500 DUZ D 17 O3' DUZ D 18 P -0.098 REMARK 500 DUZ D 18 O3' DA D 19 P -0.094 REMARK 500 DUZ D 27 O3' DG D 28 P -0.088 REMARK 500 DUZ E 3 O3' DG E 4 P -0.074 REMARK 500 DUZ E 11 O3' DG E 12 P -0.117 REMARK 500 DUZ E 17 O3' DUZ E 18 P -0.090 REMARK 500 DUZ E 18 O3' DA E 19 P -0.086 REMARK 500 DUZ E 27 O3' DG E 28 P -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DUZ D 3 O3' - P - OP1 ANGL. DEV. = 12.7 DEGREES REMARK 500 DG D 4 O3' - P - O5' ANGL. DEV. = -15.5 DEGREES REMARK 500 DG D 4 O3' - P - OP2 ANGL. DEV. = 14.6 DEGREES REMARK 500 DUZ D 10 C3' - O3' - P ANGL. DEV. = 14.4 DEGREES REMARK 500 DG D 12 O3' - P - O5' ANGL. DEV. = -15.2 DEGREES REMARK 500 DUZ D 17 O3' - P - O5' ANGL. DEV. = -12.5 DEGREES REMARK 500 DUZ D 17 O3' - P - OP1 ANGL. DEV. = 14.0 DEGREES REMARK 500 DUZ D 17 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 DA D 19 O3' - P - OP1 ANGL. DEV. = 7.2 DEGREES REMARK 500 DUZ D 24 O3' - P - OP1 ANGL. DEV. = 9.9 DEGREES REMARK 500 DUZ D 25 O3' - P - OP2 ANGL. DEV. = 12.9 DEGREES REMARK 500 DUZ D 25 C3' - O3' - P ANGL. DEV. = 29.9 DEGREES REMARK 500 DUZ D 27 C3' - O3' - P ANGL. DEV. = 24.0 DEGREES REMARK 500 DUZ E 3 C3' - O3' - P ANGL. DEV. = 22.1 DEGREES REMARK 500 DG E 4 O3' - P - OP2 ANGL. DEV. = 8.3 DEGREES REMARK 500 DUZ E 10 O3' - P - OP2 ANGL. DEV. = 36.0 DEGREES REMARK 500 DUZ E 10 O3' - P - OP1 ANGL. DEV. = -21.9 DEGREES REMARK 500 DUZ E 11 O3' - P - OP1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DUZ E 11 C3' - O3' - P ANGL. DEV. = -11.4 DEGREES REMARK 500 DG E 12 O3' - P - OP1 ANGL. DEV. = -14.6 DEGREES REMARK 500 DUZ E 16 O3' - P - O5' ANGL. DEV. = 18.3 DEGREES REMARK 500 DUZ E 17 O3' - P - OP1 ANGL. DEV. = 11.6 DEGREES REMARK 500 DUZ E 17 C3' - O3' - P ANGL. DEV. = 12.8 DEGREES REMARK 500 DUZ E 18 C3' - O3' - P ANGL. DEV. = 19.1 DEGREES REMARK 500 DA E 19 O3' - P - OP2 ANGL. DEV. = 22.3 DEGREES REMARK 500 DA E 19 O5' - P - OP2 ANGL. DEV. = -8.6 DEGREES REMARK 500 DUZ E 24 C3' - O3' - P ANGL. DEV. = -8.5 DEGREES REMARK 500 DUZ E 25 O3' - P - OP2 ANGL. DEV. = 7.2 DEGREES REMARK 500 DUZ E 25 C3' - O3' - P ANGL. DEV. = 19.6 DEGREES REMARK 500 DUZ E 27 C3' - O3' - P ANGL. DEV. = 32.9 DEGREES REMARK 500 DG E 28 O3' - P - OP2 ANGL. DEV. = -18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 8 -9.15 -55.79 REMARK 500 ASP B 72 89.19 -64.49 REMARK 500 SER B 113 -152.37 -154.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 59 ASP B 60 -149.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues DUZ D 10 and DUZ D 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues DUZ D 16 and DUZ D 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues DUZ D 17 and DUZ D 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues DUZ D 24 and DUZ D 25 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues DUZ E 10 and DUZ E 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues DUZ E 16 and DUZ E 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues DUZ E 17 and DUZ E 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues DUZ E 24 and DUZ E 25 DBREF 4ZBN D 1 28 PDB 4ZBN 4ZBN 1 28 DBREF 4ZBN E 1 28 PDB 4ZBN 4ZBN 1 28 DBREF 4ZBN A 1 120 UNP P01138 NGF_HUMAN 122 241 DBREF 4ZBN B 1 120 UNP P01138 NGF_HUMAN 122 241 SEQRES 1 D 28 DC DA DUZ DG DA DG DG DA DC DUZ DUZ DG DG SEQRES 2 D 28 DG DG DUZ DUZ DUZ DA DG DC DC DG DUZ DUZ DG SEQRES 3 D 28 DUZ DG SEQRES 1 E 28 DC DA DUZ DG DA DG DG DA DC DUZ DUZ DG DG SEQRES 2 E 28 DG DG DUZ DUZ DUZ DA DG DC DC DG DUZ DUZ DG SEQRES 3 E 28 DUZ DG SEQRES 1 A 120 SER SER SER HIS PRO ILE PHE HIS ARG GLY GLU PHE SER SEQRES 2 A 120 VAL CYS ASP SER VAL SER VAL TRP VAL GLY ASP LYS THR SEQRES 3 A 120 THR ALA THR ASP ILE LYS GLY LYS GLU VAL MET VAL LEU SEQRES 4 A 120 GLY GLU VAL ASN ILE ASN ASN SER VAL PHE LYS GLN TYR SEQRES 5 A 120 PHE PHE GLU THR LYS CYS ARG ASP PRO ASN PRO VAL ASP SEQRES 6 A 120 SER GLY CYS ARG GLY ILE ASP SER LYS HIS TRP ASN SER SEQRES 7 A 120 TYR CYS THR THR THR HIS THR PHE VAL LYS ALA LEU THR SEQRES 8 A 120 MET ASP GLY LYS GLN ALA ALA TRP ARG PHE ILE ARG ILE SEQRES 9 A 120 ASP THR ALA CYS VAL CYS VAL LEU SER ARG LYS ALA VAL SEQRES 10 A 120 ARG ARG ALA SEQRES 1 B 120 SER SER SER HIS PRO ILE PHE HIS ARG GLY GLU PHE SER SEQRES 2 B 120 VAL CYS ASP SER VAL SER VAL TRP VAL GLY ASP LYS THR SEQRES 3 B 120 THR ALA THR ASP ILE LYS GLY LYS GLU VAL MET VAL LEU SEQRES 4 B 120 GLY GLU VAL ASN ILE ASN ASN SER VAL PHE LYS GLN TYR SEQRES 5 B 120 PHE PHE GLU THR LYS CYS ARG ASP PRO ASN PRO VAL ASP SEQRES 6 B 120 SER GLY CYS ARG GLY ILE ASP SER LYS HIS TRP ASN SER SEQRES 7 B 120 TYR CYS THR THR THR HIS THR PHE VAL LYS ALA LEU THR SEQRES 8 B 120 MET ASP GLY LYS GLN ALA ALA TRP ARG PHE ILE ARG ILE SEQRES 9 B 120 ASP THR ALA CYS VAL CYS VAL LEU SER ARG LYS ALA VAL SEQRES 10 B 120 ARG ARG ALA HET DUZ D 3 29 HET DUZ D 10 29 HET DUZ D 11 29 HET DUZ D 16 29 HET DUZ D 17 29 HET DUZ D 18 29 HET DUZ D 24 29 HET DUZ D 25 29 HET DUZ D 27 29 HET DUZ E 3 29 HET DUZ E 10 29 HET DUZ E 11 29 HET DUZ E 16 29 HET DUZ E 17 29 HET DUZ E 18 29 HET DUZ E 24 29 HET DUZ E 25 29 HET DUZ E 27 29 HET EPE D 101 15 HETNAM DUZ 5-(BENZYLCARBAMOYL)-2'-DEOXYURIDINE 5'-(DIHYDROGEN HETNAM 2 DUZ PHOSPHATE) HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 1 DUZ 18(C17 H20 N3 O9 P) FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 HOH *21(H2 O) HELIX 1 AA1 ILE B 6 GLY B 10 5 5 SHEET 1 AA1 5 PHE A 12 SER A 13 0 SHEET 2 AA1 5 ALA B 98 SER B 113 -1 O LEU B 112 N PHE A 12 SHEET 3 AA1 5 ASN B 77 MET B 92 -1 N THR B 91 O ALA B 98 SHEET 4 AA1 5 GLU B 35 VAL B 38 -1 N MET B 37 O MET B 92 SHEET 5 AA1 5 THR B 27 THR B 29 -1 N ALA B 28 O VAL B 36 SHEET 1 AA2 2 SER A 17 VAL A 22 0 SHEET 2 AA2 2 PHE A 53 CYS A 58 -1 O GLU A 55 N VAL A 20 SHEET 1 AA3 5 THR A 27 THR A 29 0 SHEET 2 AA3 5 GLU A 35 VAL A 38 -1 O VAL A 36 N ALA A 28 SHEET 3 AA3 5 ASN A 77 ASP A 93 -1 O MET A 92 N MET A 37 SHEET 4 AA3 5 GLN A 96 SER A 113 -1 O VAL A 111 N TYR A 79 SHEET 5 AA3 5 PHE B 12 SER B 13 -1 O PHE B 12 N LEU A 112 SHEET 1 AA4 2 GLU A 41 VAL A 42 0 SHEET 2 AA4 2 PHE A 49 LYS A 50 -1 O PHE A 49 N VAL A 42 SHEET 1 AA5 2 SER B 17 VAL B 22 0 SHEET 2 AA5 2 PHE B 53 CYS B 58 -1 O PHE B 53 N VAL B 22 SHEET 1 AA6 2 GLU B 41 VAL B 42 0 SHEET 2 AA6 2 PHE B 49 LYS B 50 -1 O PHE B 49 N VAL B 42 SSBOND 1 CYS A 15 CYS A 80 1555 1555 2.08 SSBOND 2 CYS A 58 CYS A 108 1555 1555 2.03 SSBOND 3 CYS A 68 CYS A 110 1555 1555 2.03 SSBOND 4 CYS B 15 CYS B 80 1555 1555 2.08 SSBOND 5 CYS B 58 CYS B 108 1555 1555 2.05 SSBOND 6 CYS B 68 CYS B 110 1555 1555 2.03 LINK O3' DA D 2 P DUZ D 3 1555 1555 1.61 LINK O3' DUZ D 3 P DG D 4 1555 1555 1.51 LINK O3' DC D 9 P DUZ D 10 1555 1555 1.58 LINK O3' DUZ D 10 P DUZ D 11 1555 1555 1.54 LINK O3' DUZ D 11 P DG D 12 1555 1555 1.49 LINK O3' DG D 15 P DUZ D 16 1555 1555 1.57 LINK O3' DUZ D 16 P DUZ D 17 1555 1555 1.61 LINK O3' DUZ D 17 P DUZ D 18 1555 1555 1.51 LINK O3' DUZ D 18 P DA D 19 1555 1555 1.51 LINK O3' DG D 23 P DUZ D 24 1555 1555 1.63 LINK O3' DUZ D 24 P DUZ D 25 1555 1555 1.64 LINK O3' DUZ D 25 P DG D 26 1555 1555 1.66 LINK O3' DG D 26 P DUZ D 27 1555 1555 1.60 LINK O3' DUZ D 27 P DG D 28 1555 1555 1.52 LINK O3' DA E 2 P DUZ E 3 1555 1555 1.63 LINK O3' DUZ E 3 P DG E 4 1555 1555 1.53 LINK O3' DC E 9 P DUZ E 10 1555 1555 1.58 LINK O3' DUZ E 10 P DUZ E 11 1555 1555 1.60 LINK O3' DUZ E 11 P DG E 12 1555 1555 1.49 LINK O3' DG E 15 P DUZ E 16 1555 1555 1.59 LINK O3' DUZ E 16 P DUZ E 17 1555 1555 1.66 LINK O3' DUZ E 17 P DUZ E 18 1555 1555 1.52 LINK O3' DUZ E 18 P DA E 19 1555 1555 1.52 LINK O3' DG E 23 P DUZ E 24 1555 1555 1.57 LINK O3' DUZ E 24 P DUZ E 25 1555 1555 1.58 LINK O3' DUZ E 25 P DG E 26 1555 1555 1.67 LINK O3' DG E 26 P DUZ E 27 1555 1555 1.59 LINK O3' DUZ E 27 P DG E 28 1555 1555 1.50 CISPEP 1 HIS B 4 PRO B 5 0 -13.09 CISPEP 2 HIS B 4 PRO B 5 0 -12.84 SITE 1 AC1 4 HIS A 75 DC D 1 DA D 19 DG D 20 SITE 1 AC2 9 ARG A 59 ARG A 69 DA D 8 DC D 9 SITE 2 AC2 9 DG D 12 DUZ D 25 DG D 26 DUZ D 27 SITE 3 AC2 9 DG D 28 SITE 1 AC3 13 TRP A 21 TYR A 52 ILE B 31 LYS B 32 SITE 2 AC3 13 PHE B 101 DUZ D 3 DG D 4 DG D 14 SITE 3 AC3 13 DG D 15 DUZ D 18 DA D 19 DC D 21 SITE 4 AC3 13 DC D 22 SITE 1 AC4 15 TRP A 21 TYR A 52 ILE B 31 LYS B 32 SITE 2 AC4 15 PHE B 101 DC D 1 DA D 2 DUZ D 3 SITE 3 AC4 15 DG D 14 DG D 15 DUZ D 16 DA D 19 SITE 4 AC4 15 DG D 20 DC D 21 DC D 22 SITE 1 AC5 12 SER A 17 VAL A 18 SER A 19 ARG A 59 SITE 2 AC5 12 HOH A 201 DG D 7 DA D 8 DUZ D 11 SITE 3 AC5 12 DG D 12 DG D 13 DG D 23 DG D 26 SITE 1 AC6 9 ARG B 59 ARG B 69 DA E 8 DC E 9 SITE 2 AC6 9 DG E 12 DUZ E 25 DG E 26 DUZ E 27 SITE 3 AC6 9 DG E 28 SITE 1 AC7 9 PHE A 101 TRP B 21 TYR B 52 DUZ E 3 SITE 2 AC7 9 DG E 4 DG E 15 DUZ E 18 DA E 19 SITE 3 AC7 9 DC E 21 SITE 1 AC8 12 LYS A 32 PHE A 101 HIS B 4 TRP B 21 SITE 2 AC8 12 TYR B 52 DC E 1 DA E 2 DUZ E 3 SITE 3 AC8 12 DG E 15 DUZ E 16 DA E 19 DC E 21 SITE 1 AC9 12 PHE B 7 SER B 17 VAL B 18 SER B 19 SITE 2 AC9 12 ARG B 59 DG E 7 DA E 8 DUZ E 11 SITE 3 AC9 12 DG E 12 DG E 13 DG E 23 DG E 26 CRYST1 109.201 60.708 68.589 90.00 95.57 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009157 0.000000 0.000892 0.00000 SCALE2 0.000000 0.016472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014649 0.00000