PDB Short entry for 4ZIN HEADER FLUORESCENT PROTEIN 28-APR-15 4ZIN TITLE GENETICALLY ENCODED PHENYL AZIDE PHOTOCHEMISTRY DRIVE POSITIVE AND TITLE 2 NEGATIVE FUNCTIONAL MODULATION OF A RED FLUORESCENT PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MCHERRY FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANAPLASMA MARGINALE; SOURCE 3 ORGANISM_TAXID: 770; SOURCE 4 GENE: MCHERRY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MCHERRY, PHOTOACTIVATION, PHOTODEACTIVATION, COLORATION, KEYWDS 2 FLUORESCENCE, MICROSCOPY, PHENYL AZIDE, NON-CANONICAL AMINO ACIDS, KEYWDS 3 OPTOGENETICS, SYNCHROTRON, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.C.REDDINGTON,S.DRIEZIS,A.M.HARTLEY,P.D.WATSON,P.J.RIZKALLAH, AUTHOR 2 D.D.JONES REVDAT 4 10-JAN-24 4ZIN 1 REMARK REVDAT 3 23-OCT-19 4ZIN 1 JRNL REMARK SEQADV REVDAT 2 07-FEB-18 4ZIN 1 JRNL REVDAT 1 16-SEP-15 4ZIN 0 JRNL AUTH S.C.REDDINGTON,S.DRIEZIS,A.M.HARTLEY,P.D.WATSON, JRNL AUTH 2 P.J.RIZKALLAH,D.D.JONES JRNL TITL GENETICALLY ENCODED PHENYL AZIDE PHOTOCHEMISTRY DRIVES JRNL TITL 2 POSITIVE AND NEGATIVE FUNCTIONAL MODULATION OF A RED JRNL TITL 3 FLUORESCENT PROTEIN JRNL REF RSC ADV V. 5 77734 2015 JRNL REFN ESSN 2046-2069 JRNL DOI 10.1039/C5RA13552D REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 75603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3874 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5508 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 257 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.38000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 2.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.909 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5394 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5027 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7241 ; 2.120 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11660 ; 0.925 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 642 ; 7.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;29.869 ;24.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 945 ;14.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.358 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5994 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1203 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2586 ; 1.839 ; 1.930 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2585 ; 1.829 ; 1.929 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3222 ; 2.471 ; 2.887 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 300 REMARK 3 RESIDUE RANGE : B 1 B 300 REMARK 3 RESIDUE RANGE : C 1 C 300 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0184 -6.6180 -33.0201 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.0429 REMARK 3 T33: 0.0072 T12: 0.0230 REMARK 3 T13: 0.0202 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.1733 L22: 0.3625 REMARK 3 L33: 0.0836 L12: 0.0747 REMARK 3 L13: 0.0516 L23: -0.1267 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: 0.0699 S13: 0.0131 REMARK 3 S21: -0.0284 S22: 0.0015 S23: 0.0283 REMARK 3 S31: 0.0050 S32: 0.0316 S33: -0.0081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4ZIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9-8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79561 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 51.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.81400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6, PHASER REMARK 200 STARTING MODEL: 2H5O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP, PH 8.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.64000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.36000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.36000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.64000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH CH6 C 66 O HOH C 401 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ILE B 161 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 LEU B 199 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG B 216 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 55 32.34 -93.95 REMARK 500 TYR A 72 42.56 -104.31 REMARK 500 PRO B 55 35.91 -99.20 REMARK 500 TYR B 72 49.80 -106.14 REMARK 500 MET B 141 52.39 -145.34 REMARK 500 PRO C 55 47.03 -90.61 REMARK 500 TYR C 72 49.72 -107.03 REMARK 500 MET C 141 47.58 -147.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE B 65 and CH6 B REMARK 800 66 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CH6 B 66 and SER B REMARK 800 69 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLY B 142 and 4OO B REMARK 800 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 4OO B 143 and GLU B REMARK 800 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE C 65 and CH6 C REMARK 800 66 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CH6 C 66 and SER C REMARK 800 69 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLY C 142 and 4OO C REMARK 800 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 4OO C 143 and GLU C REMARK 800 144 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZIO RELATED DB: PDB DBREF 4ZIN A 6 224 UNP X5DSL3 X5DSL3_ANAMA 11 229 DBREF 4ZIN B 6 224 UNP X5DSL3 X5DSL3_ANAMA 11 229 DBREF 4ZIN C 6 224 UNP X5DSL3 X5DSL3_ANAMA 11 229 SEQADV 4ZIN CH6 A 66 UNP X5DSL3 MET 71 CHROMOPHORE SEQADV 4ZIN CH6 A 66 UNP X5DSL3 TYR 72 CHROMOPHORE SEQADV 4ZIN CH6 A 66 UNP X5DSL3 GLY 73 CHROMOPHORE SEQADV 4ZIN 4OO A 143 UNP X5DSL3 TRP 148 CONFLICT SEQADV 4ZIN CH6 B 66 UNP X5DSL3 MET 71 CHROMOPHORE SEQADV 4ZIN CH6 B 66 UNP X5DSL3 TYR 72 CHROMOPHORE SEQADV 4ZIN CH6 B 66 UNP X5DSL3 GLY 73 CHROMOPHORE SEQADV 4ZIN 4OO B 143 UNP X5DSL3 TRP 148 CONFLICT SEQADV 4ZIN CH6 C 66 UNP X5DSL3 MET 71 CHROMOPHORE SEQADV 4ZIN CH6 C 66 UNP X5DSL3 TYR 72 CHROMOPHORE SEQADV 4ZIN CH6 C 66 UNP X5DSL3 GLY 73 CHROMOPHORE SEQADV 4ZIN 4OO C 143 UNP X5DSL3 TRP 148 CONFLICT SEQRES 1 A 217 ALA ILE ILE LYS GLU PHE MET ARG PHE LYS VAL HIS MET SEQRES 2 A 217 GLU GLY SER VAL ASN GLY HIS GLU PHE GLU ILE GLU GLY SEQRES 3 A 217 GLU GLY GLU GLY ARG PRO TYR GLU GLY THR GLN THR ALA SEQRES 4 A 217 LYS LEU LYS VAL THR LYS GLY GLY PRO LEU PRO PHE ALA SEQRES 5 A 217 TRP ASP ILE LEU SER PRO GLN PHE CH6 SER LYS ALA TYR SEQRES 6 A 217 VAL LYS HIS PRO ALA ASP ILE PRO ASP TYR LEU LYS LEU SEQRES 7 A 217 SER PHE PRO GLU GLY PHE LYS TRP GLU ARG VAL MET ASN SEQRES 8 A 217 PHE GLU ASP GLY GLY VAL VAL THR VAL THR GLN ASP SER SEQRES 9 A 217 SER LEU GLN ASP GLY GLU PHE ILE TYR LYS VAL LYS LEU SEQRES 10 A 217 ARG GLY THR ASN PHE PRO SER ASP GLY PRO VAL MET GLN SEQRES 11 A 217 LYS LYS THR MET GLY 4OO GLU ALA SER SER GLU ARG MET SEQRES 12 A 217 TYR PRO GLU ASP GLY ALA LEU LYS GLY GLU ILE LYS GLN SEQRES 13 A 217 ARG LEU LYS LEU LYS ASP GLY GLY HIS TYR ASP ALA GLU SEQRES 14 A 217 VAL LYS THR THR TYR LYS ALA LYS LYS PRO VAL GLN LEU SEQRES 15 A 217 PRO GLY ALA TYR ASN VAL ASN ILE LYS LEU ASP ILE THR SEQRES 16 A 217 SER HIS ASN GLU ASP TYR THR ILE VAL GLU GLN TYR GLU SEQRES 17 A 217 ARG ALA GLU GLY ARG HIS SER THR GLY SEQRES 1 B 217 ALA ILE ILE LYS GLU PHE MET ARG PHE LYS VAL HIS MET SEQRES 2 B 217 GLU GLY SER VAL ASN GLY HIS GLU PHE GLU ILE GLU GLY SEQRES 3 B 217 GLU GLY GLU GLY ARG PRO TYR GLU GLY THR GLN THR ALA SEQRES 4 B 217 LYS LEU LYS VAL THR LYS GLY GLY PRO LEU PRO PHE ALA SEQRES 5 B 217 TRP ASP ILE LEU SER PRO GLN PHE CH6 SER LYS ALA TYR SEQRES 6 B 217 VAL LYS HIS PRO ALA ASP ILE PRO ASP TYR LEU LYS LEU SEQRES 7 B 217 SER PHE PRO GLU GLY PHE LYS TRP GLU ARG VAL MET ASN SEQRES 8 B 217 PHE GLU ASP GLY GLY VAL VAL THR VAL THR GLN ASP SER SEQRES 9 B 217 SER LEU GLN ASP GLY GLU PHE ILE TYR LYS VAL LYS LEU SEQRES 10 B 217 ARG GLY THR ASN PHE PRO SER ASP GLY PRO VAL MET GLN SEQRES 11 B 217 LYS LYS THR MET GLY 4OO GLU ALA SER SER GLU ARG MET SEQRES 12 B 217 TYR PRO GLU ASP GLY ALA LEU LYS GLY GLU ILE LYS GLN SEQRES 13 B 217 ARG LEU LYS LEU LYS ASP GLY GLY HIS TYR ASP ALA GLU SEQRES 14 B 217 VAL LYS THR THR TYR LYS ALA LYS LYS PRO VAL GLN LEU SEQRES 15 B 217 PRO GLY ALA TYR ASN VAL ASN ILE LYS LEU ASP ILE THR SEQRES 16 B 217 SER HIS ASN GLU ASP TYR THR ILE VAL GLU GLN TYR GLU SEQRES 17 B 217 ARG ALA GLU GLY ARG HIS SER THR GLY SEQRES 1 C 217 ALA ILE ILE LYS GLU PHE MET ARG PHE LYS VAL HIS MET SEQRES 2 C 217 GLU GLY SER VAL ASN GLY HIS GLU PHE GLU ILE GLU GLY SEQRES 3 C 217 GLU GLY GLU GLY ARG PRO TYR GLU GLY THR GLN THR ALA SEQRES 4 C 217 LYS LEU LYS VAL THR LYS GLY GLY PRO LEU PRO PHE ALA SEQRES 5 C 217 TRP ASP ILE LEU SER PRO GLN PHE CH6 SER LYS ALA TYR SEQRES 6 C 217 VAL LYS HIS PRO ALA ASP ILE PRO ASP TYR LEU LYS LEU SEQRES 7 C 217 SER PHE PRO GLU GLY PHE LYS TRP GLU ARG VAL MET ASN SEQRES 8 C 217 PHE GLU ASP GLY GLY VAL VAL THR VAL THR GLN ASP SER SEQRES 9 C 217 SER LEU GLN ASP GLY GLU PHE ILE TYR LYS VAL LYS LEU SEQRES 10 C 217 ARG GLY THR ASN PHE PRO SER ASP GLY PRO VAL MET GLN SEQRES 11 C 217 LYS LYS THR MET GLY 4OO GLU ALA SER SER GLU ARG MET SEQRES 12 C 217 TYR PRO GLU ASP GLY ALA LEU LYS GLY GLU ILE LYS GLN SEQRES 13 C 217 ARG LEU LYS LEU LYS ASP GLY GLY HIS TYR ASP ALA GLU SEQRES 14 C 217 VAL LYS THR THR TYR LYS ALA LYS LYS PRO VAL GLN LEU SEQRES 15 C 217 PRO GLY ALA TYR ASN VAL ASN ILE LYS LEU ASP ILE THR SEQRES 16 C 217 SER HIS ASN GLU ASP TYR THR ILE VAL GLU GLN TYR GLU SEQRES 17 C 217 ARG ALA GLU GLY ARG HIS SER THR GLY HET CH6 A 66 23 HET 4OO A 143 14 HET CH6 B 66 23 HET 4OO B 143 14 HET CH6 C 66 23 HET 4OO C 143 14 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 C 301 5 HET SO4 C 302 5 HET EDO C 303 4 HETNAM CH6 {(4Z)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-4-[(4- HETNAM 2 CH6 HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H- HETNAM 3 CH6 IMIDAZOL-1-YL}ACETIC ACID HETNAM 4OO 4-TRIAZA-1,2-DIEN-2-IUM-1-YL-L-PHENYLALANINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CH6 CHROMOPHORE (MET-TYR-GLY) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CH6 3(C16 H19 N3 O4 S) FORMUL 1 4OO 3(C9 H11 N4 O2 1+) FORMUL 4 SO4 6(O4 S 2-) FORMUL 10 EDO C2 H6 O2 FORMUL 11 HOH *400(H2 O) HELIX 1 AA1 ALA A 57 PHE A 65 5 9 HELIX 2 AA2 ASP A 81 SER A 86 1 6 HELIX 3 AA3 ALA B 57 PHE B 65 5 9 HELIX 4 AA4 SER B 69 VAL B 73 5 5 HELIX 5 AA5 ASP B 81 SER B 86 1 6 HELIX 6 AA6 ALA C 57 PHE C 65 5 9 HELIX 7 AA7 SER C 69 VAL C 73 5 5 HELIX 8 AA8 ASP C 81 SER C 86 1 6 SHEET 1 AA113 THR A 140 4OO A 143 0 SHEET 2 AA113 ALA A 156 LEU A 167 -1 O LYS A 166 N MET A 141 SHEET 3 AA113 HIS A 172 ALA A 183 -1 O TYR A 181 N LEU A 157 SHEET 4 AA113 PHE A 91 PHE A 99 -1 N ASN A 98 O GLU A 176 SHEET 5 AA113 VAL A 104 GLN A 114 -1 O VAL A 107 N ARG A 95 SHEET 6 AA113 GLU A 117 THR A 127 -1 O THR A 127 N VAL A 104 SHEET 7 AA113 MET A 12 VAL A 22 1 N SER A 21 O GLY A 126 SHEET 8 AA113 HIS A 25 ARG A 36 -1 O GLY A 33 N PHE A 14 SHEET 9 AA113 THR A 41 LYS A 50 -1 O LYS A 47 N GLU A 30 SHEET 10 AA113 ILE A 210 HIS A 221 -1 O VAL A 211 N LEU A 46 SHEET 11 AA113 TYR A 193 HIS A 204 -1 N ASN A 194 O ARG A 220 SHEET 12 AA113 SER A 146 GLU A 153 -1 N MET A 150 O TYR A 193 SHEET 13 AA113 ALA A 156 LEU A 167 -1 O LYS A 158 N TYR A 151 SHEET 1 AA213 THR B 140 4OO B 143 0 SHEET 2 AA213 ALA B 156 LEU B 167 -1 O LYS B 166 N GLY B 142 SHEET 3 AA213 HIS B 172 ALA B 183 -1 O TYR B 181 N LEU B 157 SHEET 4 AA213 PHE B 91 PHE B 99 -1 N LYS B 92 O LYS B 182 SHEET 5 AA213 VAL B 104 GLN B 114 -1 O SER B 111 N PHE B 91 SHEET 6 AA213 GLU B 117 THR B 127 -1 O ARG B 125 N THR B 106 SHEET 7 AA213 MET B 12 VAL B 22 1 N HIS B 17 O VAL B 122 SHEET 8 AA213 HIS B 25 ARG B 36 -1 O ILE B 29 N MET B 18 SHEET 9 AA213 THR B 41 LYS B 50 -1 O LYS B 45 N GLU B 32 SHEET 10 AA213 ILE B 210 HIS B 221 -1 O VAL B 211 N LEU B 46 SHEET 11 AA213 TYR B 193 HIS B 204 -1 N ASN B 194 O ARG B 220 SHEET 12 AA213 SER B 146 GLU B 153 -1 N MET B 150 O TYR B 193 SHEET 13 AA213 ALA B 156 LEU B 167 -1 O LYS B 158 N TYR B 151 SHEET 1 AA313 THR C 140 4OO C 143 0 SHEET 2 AA313 ALA C 156 LEU C 167 -1 O LYS C 166 N GLY C 142 SHEET 3 AA313 HIS C 172 ALA C 183 -1 O VAL C 177 N ILE C 161 SHEET 4 AA313 PHE C 91 PHE C 99 -1 N GLU C 94 O THR C 180 SHEET 5 AA313 VAL C 104 GLN C 114 -1 O VAL C 105 N MET C 97 SHEET 6 AA313 GLU C 117 THR C 127 -1 O ILE C 119 N SER C 112 SHEET 7 AA313 MET C 12 VAL C 22 1 N LYS C 15 O TYR C 120 SHEET 8 AA313 HIS C 25 ARG C 36 -1 O GLY C 31 N VAL C 16 SHEET 9 AA313 THR C 41 LYS C 50 -1 O THR C 43 N GLU C 34 SHEET 10 AA313 ILE C 210 HIS C 221 -1 O VAL C 211 N LEU C 46 SHEET 11 AA313 TYR C 193 HIS C 204 -1 N SER C 203 O GLU C 212 SHEET 12 AA313 SER C 146 GLU C 153 -1 N MET C 150 O TYR C 193 SHEET 13 AA313 ALA C 156 LEU C 167 -1 O LYS C 158 N TYR C 151 LINK C PHE A 65 N1 CH6 A 66 1555 1555 1.30 LINK C3 CH6 A 66 N SER A 69 1555 1555 1.23 LINK C GLY A 142 N 4OO A 143 1555 1555 1.31 LINK C 4OO A 143 N GLU A 144 1555 1555 1.31 LINK C PHE B 65 N1 CH6 B 66 1555 1555 1.28 LINK C3 CH6 B 66 N SER B 69 1555 1555 1.25 LINK C GLY B 142 N 4OO B 143 1555 1555 1.32 LINK C 4OO B 143 N GLU B 144 1555 1555 1.32 LINK C PHE C 65 N1 CH6 C 66 1555 1555 1.28 LINK C3 CH6 C 66 N SER C 69 1555 1555 1.26 LINK C GLY C 142 N 4OO C 143 1555 1555 1.32 LINK C 4OO C 143 N GLU C 144 1555 1555 1.31 CISPEP 1 GLY A 52 PRO A 53 0 -7.82 CISPEP 2 PHE A 87 PRO A 88 0 17.81 CISPEP 3 GLY B 52 PRO B 53 0 1.08 CISPEP 4 PHE B 87 PRO B 88 0 16.02 CISPEP 5 GLY C 52 PRO C 53 0 -5.39 CISPEP 6 PHE C 87 PRO C 88 0 19.18 SITE 1 AC1 5 THR A 106 THR A 108 LYS A 123 LEU A 124 SITE 2 AC1 5 ARG A 125 SITE 1 AC2 9 ASP A 78 ILE A 79 PRO A 80 PRO A 190 SITE 2 AC2 9 GLY A 191 ALA A 192 TYR A 193 HOH A 430 SITE 3 AC2 9 HOH A 540 SITE 1 AC3 5 THR B 106 THR B 108 LYS B 123 LEU B 124 SITE 2 AC3 5 ARG B 125 SITE 1 AC4 5 ASN B 196 LYS B 198 ARG B 216 ALA B 217 SITE 2 AC4 5 GLU B 218 SITE 1 AC5 6 ILE C 79 PRO C 190 GLY C 191 ALA C 192 SITE 2 AC5 6 HOH C 438 HOH C 459 SITE 1 AC6 3 THR C 106 THR C 108 LYS C 123 SITE 1 AC7 7 GLU B 153 ASP B 154 ASN C 23 GLY C 24 SITE 2 AC7 7 THR C 127 ASN C 128 HOH C 409 SITE 1 AC8 20 MET B 18 LEU B 61 SER B 62 PRO B 63 SITE 2 AC8 20 GLN B 64 SER B 69 LYS B 70 ARG B 95 SITE 3 AC8 20 GLN B 109 4OO B 143 GLU B 144 ILE B 161 SITE 4 AC8 20 GLN B 163 ILE B 197 LEU B 199 GLN B 213 SITE 5 AC8 20 GLU B 215 HOH B 405 HOH B 425 HOH B 461 SITE 1 AC9 21 GLN B 42 SER B 62 PRO B 63 GLN B 64 SITE 2 AC9 21 PHE B 65 LYS B 70 ALA B 71 TYR B 72 SITE 3 AC9 21 ARG B 95 GLN B 109 4OO B 143 GLU B 144 SITE 4 AC9 21 ILE B 161 GLN B 163 ILE B 197 LEU B 199 SITE 5 AC9 21 GLN B 213 GLU B 215 HOH B 405 HOH B 425 SITE 6 AC9 21 HOH B 461 SITE 1 AD1 14 ASP B 59 SER B 62 PRO B 63 CH6 B 66 SITE 2 AD1 14 MET B 97 MET B 141 GLU B 144 GLN B 163 SITE 3 AD1 14 ARG B 164 LEU B 165 LYS B 166 LEU B 199 SITE 4 AD1 14 HOH B 430 HOH B 443 SITE 1 AD2 17 ASP B 59 SER B 62 PRO B 63 CH6 B 66 SITE 2 AD2 17 MET B 97 GLY B 142 ALA B 145 SER B 146 SITE 3 AD2 17 GLN B 163 ARG B 164 LEU B 165 LYS B 166 SITE 4 AD2 17 HIS B 172 LEU B 199 HOH B 421 HOH B 430 SITE 5 AD2 17 HOH B 443 SITE 1 AD3 19 MET C 18 ALA C 44 LEU C 61 SER C 62 SITE 2 AD3 19 PRO C 63 GLN C 64 SER C 69 LYS C 70 SITE 3 AD3 19 TRP C 93 ARG C 95 SER C 146 GLN C 163 SITE 4 AD3 19 ILE C 197 LEU C 199 GLN C 213 GLU C 215 SITE 5 AD3 19 HOH C 401 HOH C 421 HOH C 433 SITE 1 AD4 21 GLN C 42 ALA C 44 SER C 62 PRO C 63 SITE 2 AD4 21 GLN C 64 PHE C 65 LYS C 70 ALA C 71 SITE 3 AD4 21 TYR C 72 TRP C 93 ARG C 95 TYR C 120 SITE 4 AD4 21 SER C 146 GLN C 163 ILE C 197 LEU C 199 SITE 5 AD4 21 GLN C 213 GLU C 215 HOH C 401 HOH C 421 SITE 6 AD4 21 HOH C 433 SITE 1 AD5 11 ASP C 59 SER C 62 PRO C 63 MET C 97 SITE 2 AD5 11 PHE C 99 MET C 141 GLU C 144 ARG C 164 SITE 3 AD5 11 LEU C 165 LYS C 166 HOH C 437 SITE 1 AD6 15 ASP C 59 SER C 62 PRO C 63 MET C 97 SITE 2 AD6 15 PHE C 99 GLY C 142 ALA C 145 SER C 146 SITE 3 AD6 15 ARG C 164 LEU C 165 LYS C 166 HOH C 401 SITE 4 AD6 15 HOH C 423 HOH C 437 HOH C 483 CRYST1 43.280 103.430 150.720 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006635 0.00000