PDB Short entry for 4ZKA HEADER RNA BINDING PROTEIN 30-APR-15 4ZKA TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF FOX1 RRM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA BINDING PROTEIN FOX-1 HOMOLOG 1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: UNP RESIDUES 109-208; COMPND 5 SYNONYM: ATAXIN-2-BINDING PROTEIN 1,FOX-1 HOMOLOG A, COMPND 6 HEXARIBONUCLEOTIDE-BINDING PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBFOX1, A2BP, A2BP1, FOX1, HRNBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTYB11 KEYWDS RRM RNA BINDING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BLATTER,F.H.-T.ALLAIN REVDAT 3 08-MAY-24 4ZKA 1 REMARK REVDAT 2 28-SEP-16 4ZKA 1 REVDAT 1 29-JUN-16 4ZKA 0 JRNL AUTH M.BLATTER,F.H.-T.ALLAIN JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE OF FOX1 RRM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 50885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4216 - 5.3971 0.94 3456 136 0.2190 0.2257 REMARK 3 2 5.3971 - 4.2849 0.94 3365 149 0.1696 0.1549 REMARK 3 3 4.2849 - 3.7435 0.90 3276 135 0.1703 0.2006 REMARK 3 4 3.7435 - 3.4014 0.92 3382 125 0.1747 0.2003 REMARK 3 5 3.4014 - 3.1577 0.92 3325 136 0.1916 0.2056 REMARK 3 6 3.1577 - 2.9715 0.93 3375 132 0.1906 0.2461 REMARK 3 7 2.9715 - 2.8227 0.92 3358 153 0.1985 0.2353 REMARK 3 8 2.8227 - 2.6999 0.93 3351 121 0.1971 0.2200 REMARK 3 9 2.6999 - 2.5959 0.94 3355 150 0.1923 0.2144 REMARK 3 10 2.5959 - 2.5064 0.94 3463 143 0.1861 0.2618 REMARK 3 11 2.5064 - 2.4280 0.95 3448 140 0.1845 0.2393 REMARK 3 12 2.4280 - 2.3586 0.95 3368 156 0.1822 0.2267 REMARK 3 13 2.3586 - 2.2965 0.96 3540 125 0.1765 0.2154 REMARK 3 14 2.2965 - 2.2405 0.95 3449 148 0.1780 0.2301 REMARK 3 15 2.2405 - 2.1896 0.93 3374 135 0.1940 0.2660 REMARK 3 16 2.1896 - 2.1430 0.94 3474 122 0.1901 0.2544 REMARK 3 17 2.1430 - 2.1001 0.95 3408 185 0.1943 0.2342 REMARK 3 18 2.1001 - 2.0605 0.94 3413 111 0.1991 0.2797 REMARK 3 19 2.0605 - 2.0237 0.95 3494 140 0.2073 0.2356 REMARK 3 20 2.0237 - 1.9894 0.96 3422 137 0.2107 0.2677 REMARK 3 21 1.9894 - 1.9573 0.94 3487 140 0.2227 0.2951 REMARK 3 22 1.9573 - 1.9272 0.96 3367 142 0.2213 0.3121 REMARK 3 23 1.9272 - 1.8988 0.95 3543 146 0.2346 0.2727 REMARK 3 24 1.8988 - 1.8721 0.95 3443 112 0.2495 0.2974 REMARK 3 25 1.8721 - 1.8468 0.94 3354 161 0.2548 0.3279 REMARK 3 26 1.8468 - 1.8228 0.91 3398 117 0.2810 0.3028 REMARK 3 27 1.8228 - 1.8000 0.92 3277 138 0.2821 0.3013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4102 REMARK 3 ANGLE : 1.112 5492 REMARK 3 CHIRALITY : 0.065 553 REMARK 3 PLANARITY : 0.004 731 REMARK 3 DIHEDRAL : 14.348 1581 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 49.3479 7.0787 26.6213 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.0938 REMARK 3 T33: 0.1531 T12: 0.0074 REMARK 3 T13: -0.0292 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.1281 L22: -0.0295 REMARK 3 L33: 0.4711 L12: 0.0075 REMARK 3 L13: 0.2197 L23: 0.0793 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.0176 S13: -0.0016 REMARK 3 S21: 0.0262 S22: 0.0009 S23: -0.0109 REMARK 3 S31: 0.0027 S32: 0.0311 S33: -0.0154 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50898 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 12.5%W/V PEG 1000 12.5%W/V REMARK 280 NPS 6.6% MPD 12.5%W/V MES 0.1M, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.49000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.80850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.49000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.80850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 THR A 2 REMARK 465 ARG A 86 REMARK 465 VAL A 87 REMARK 465 MET A 88 REMARK 465 THR A 89 REMARK 465 ASN A 90 REMARK 465 LYS A 91 REMARK 465 LYS A 92 REMARK 465 THR A 93 REMARK 465 VAL A 94 REMARK 465 ASN A 95 REMARK 465 PRO A 96 REMARK 465 TYR A 97 REMARK 465 THR A 98 REMARK 465 ASN A 99 REMARK 465 GLY A 100 REMARK 465 ASN B 1 REMARK 465 THR B 2 REMARK 465 ARG B 86 REMARK 465 VAL B 87 REMARK 465 MET B 88 REMARK 465 THR B 89 REMARK 465 ASN B 90 REMARK 465 LYS B 91 REMARK 465 LYS B 92 REMARK 465 THR B 93 REMARK 465 VAL B 94 REMARK 465 ASN B 95 REMARK 465 PRO B 96 REMARK 465 TYR B 97 REMARK 465 THR B 98 REMARK 465 ASN B 99 REMARK 465 GLY B 100 REMARK 465 ASN C 1 REMARK 465 THR C 2 REMARK 465 GLU C 3 REMARK 465 ASN C 4 REMARK 465 LYS C 5 REMARK 465 SER C 6 REMARK 465 THR C 84 REMARK 465 ALA C 85 REMARK 465 ARG C 86 REMARK 465 VAL C 87 REMARK 465 MET C 88 REMARK 465 THR C 89 REMARK 465 ASN C 90 REMARK 465 LYS C 91 REMARK 465 LYS C 92 REMARK 465 THR C 93 REMARK 465 VAL C 94 REMARK 465 ASN C 95 REMARK 465 PRO C 96 REMARK 465 TYR C 97 REMARK 465 THR C 98 REMARK 465 ASN C 99 REMARK 465 GLY C 100 REMARK 465 ASN D 1 REMARK 465 THR D 2 REMARK 465 GLU D 3 REMARK 465 ARG D 86 REMARK 465 VAL D 87 REMARK 465 MET D 88 REMARK 465 THR D 89 REMARK 465 ASN D 90 REMARK 465 LYS D 91 REMARK 465 LYS D 92 REMARK 465 THR D 93 REMARK 465 VAL D 94 REMARK 465 ASN D 95 REMARK 465 PRO D 96 REMARK 465 TYR D 97 REMARK 465 THR D 98 REMARK 465 ASN D 99 REMARK 465 GLY D 100 REMARK 465 ASN E 1 REMARK 465 THR E 2 REMARK 465 GLU E 3 REMARK 465 ASN E 4 REMARK 465 ALA E 85 REMARK 465 ARG E 86 REMARK 465 VAL E 87 REMARK 465 MET E 88 REMARK 465 THR E 89 REMARK 465 ASN E 90 REMARK 465 LYS E 91 REMARK 465 LYS E 92 REMARK 465 THR E 93 REMARK 465 VAL E 94 REMARK 465 ASN E 95 REMARK 465 PRO E 96 REMARK 465 TYR E 97 REMARK 465 THR E 98 REMARK 465 ASN E 99 REMARK 465 GLY E 100 REMARK 465 ASN F 1 REMARK 465 THR F 2 REMARK 465 GLU F 3 REMARK 465 ASN F 4 REMARK 465 LYS F 5 REMARK 465 ALA F 85 REMARK 465 ARG F 86 REMARK 465 VAL F 87 REMARK 465 MET F 88 REMARK 465 THR F 89 REMARK 465 ASN F 90 REMARK 465 LYS F 91 REMARK 465 LYS F 92 REMARK 465 THR F 93 REMARK 465 VAL F 94 REMARK 465 ASN F 95 REMARK 465 PRO F 96 REMARK 465 TYR F 97 REMARK 465 THR F 98 REMARK 465 ASN F 99 REMARK 465 GLY F 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 349 O HOH F 352 0.66 REMARK 500 O HOH B 306 O HOH B 355 1.76 REMARK 500 O HOH D 347 O HOH D 349 2.05 REMARK 500 O HOH C 301 O HOH C 340 2.13 REMARK 500 OE2 GLU D 44 O HOH D 301 2.18 REMARK 500 O2S MES C 201 O HOH C 301 2.19 REMARK 500 OE1 GLU E 44 O HOH E 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH F 352 O HOH F 352 2756 1.61 REMARK 500 O HOH D 338 O HOH F 350 3445 1.96 REMARK 500 O HOH A 338 O HOH B 361 2655 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG E 45 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 -165.31 -127.27 REMARK 500 ASN B 43 -169.16 -117.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU C 79 11.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 364 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH C 348 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH D 353 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH E 353 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH F 359 DISTANCE = 6.47 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES E 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES F 202 DBREF 4ZKA A 1 100 UNP Q9NWB1 RFOX1_HUMAN 109 208 DBREF 4ZKA B 1 100 UNP Q9NWB1 RFOX1_HUMAN 109 208 DBREF 4ZKA C 1 100 UNP Q9NWB1 RFOX1_HUMAN 109 208 DBREF 4ZKA D 1 100 UNP Q9NWB1 RFOX1_HUMAN 109 208 DBREF 4ZKA E 1 100 UNP Q9NWB1 RFOX1_HUMAN 109 208 DBREF 4ZKA F 1 100 UNP Q9NWB1 RFOX1_HUMAN 109 208 SEQRES 1 A 100 ASN THR GLU ASN LYS SER GLN PRO LYS ARG LEU HIS VAL SEQRES 2 A 100 SER ASN ILE PRO PHE ARG PHE ARG ASP PRO ASP LEU ARG SEQRES 3 A 100 GLN MET PHE GLY GLN PHE GLY LYS ILE LEU ASP VAL GLU SEQRES 4 A 100 ILE ILE PHE ASN GLU ARG GLY SER LYS GLY PHE GLY PHE SEQRES 5 A 100 VAL THR PHE GLU ASN SER ALA ASP ALA ASP ARG ALA ARG SEQRES 6 A 100 GLU LYS LEU HIS GLY THR VAL VAL GLU GLY ARG LYS ILE SEQRES 7 A 100 GLU VAL ASN ASN ALA THR ALA ARG VAL MET THR ASN LYS SEQRES 8 A 100 LYS THR VAL ASN PRO TYR THR ASN GLY SEQRES 1 B 100 ASN THR GLU ASN LYS SER GLN PRO LYS ARG LEU HIS VAL SEQRES 2 B 100 SER ASN ILE PRO PHE ARG PHE ARG ASP PRO ASP LEU ARG SEQRES 3 B 100 GLN MET PHE GLY GLN PHE GLY LYS ILE LEU ASP VAL GLU SEQRES 4 B 100 ILE ILE PHE ASN GLU ARG GLY SER LYS GLY PHE GLY PHE SEQRES 5 B 100 VAL THR PHE GLU ASN SER ALA ASP ALA ASP ARG ALA ARG SEQRES 6 B 100 GLU LYS LEU HIS GLY THR VAL VAL GLU GLY ARG LYS ILE SEQRES 7 B 100 GLU VAL ASN ASN ALA THR ALA ARG VAL MET THR ASN LYS SEQRES 8 B 100 LYS THR VAL ASN PRO TYR THR ASN GLY SEQRES 1 C 100 ASN THR GLU ASN LYS SER GLN PRO LYS ARG LEU HIS VAL SEQRES 2 C 100 SER ASN ILE PRO PHE ARG PHE ARG ASP PRO ASP LEU ARG SEQRES 3 C 100 GLN MET PHE GLY GLN PHE GLY LYS ILE LEU ASP VAL GLU SEQRES 4 C 100 ILE ILE PHE ASN GLU ARG GLY SER LYS GLY PHE GLY PHE SEQRES 5 C 100 VAL THR PHE GLU ASN SER ALA ASP ALA ASP ARG ALA ARG SEQRES 6 C 100 GLU LYS LEU HIS GLY THR VAL VAL GLU GLY ARG LYS ILE SEQRES 7 C 100 GLU VAL ASN ASN ALA THR ALA ARG VAL MET THR ASN LYS SEQRES 8 C 100 LYS THR VAL ASN PRO TYR THR ASN GLY SEQRES 1 D 100 ASN THR GLU ASN LYS SER GLN PRO LYS ARG LEU HIS VAL SEQRES 2 D 100 SER ASN ILE PRO PHE ARG PHE ARG ASP PRO ASP LEU ARG SEQRES 3 D 100 GLN MET PHE GLY GLN PHE GLY LYS ILE LEU ASP VAL GLU SEQRES 4 D 100 ILE ILE PHE ASN GLU ARG GLY SER LYS GLY PHE GLY PHE SEQRES 5 D 100 VAL THR PHE GLU ASN SER ALA ASP ALA ASP ARG ALA ARG SEQRES 6 D 100 GLU LYS LEU HIS GLY THR VAL VAL GLU GLY ARG LYS ILE SEQRES 7 D 100 GLU VAL ASN ASN ALA THR ALA ARG VAL MET THR ASN LYS SEQRES 8 D 100 LYS THR VAL ASN PRO TYR THR ASN GLY SEQRES 1 E 100 ASN THR GLU ASN LYS SER GLN PRO LYS ARG LEU HIS VAL SEQRES 2 E 100 SER ASN ILE PRO PHE ARG PHE ARG ASP PRO ASP LEU ARG SEQRES 3 E 100 GLN MET PHE GLY GLN PHE GLY LYS ILE LEU ASP VAL GLU SEQRES 4 E 100 ILE ILE PHE ASN GLU ARG GLY SER LYS GLY PHE GLY PHE SEQRES 5 E 100 VAL THR PHE GLU ASN SER ALA ASP ALA ASP ARG ALA ARG SEQRES 6 E 100 GLU LYS LEU HIS GLY THR VAL VAL GLU GLY ARG LYS ILE SEQRES 7 E 100 GLU VAL ASN ASN ALA THR ALA ARG VAL MET THR ASN LYS SEQRES 8 E 100 LYS THR VAL ASN PRO TYR THR ASN GLY SEQRES 1 F 100 ASN THR GLU ASN LYS SER GLN PRO LYS ARG LEU HIS VAL SEQRES 2 F 100 SER ASN ILE PRO PHE ARG PHE ARG ASP PRO ASP LEU ARG SEQRES 3 F 100 GLN MET PHE GLY GLN PHE GLY LYS ILE LEU ASP VAL GLU SEQRES 4 F 100 ILE ILE PHE ASN GLU ARG GLY SER LYS GLY PHE GLY PHE SEQRES 5 F 100 VAL THR PHE GLU ASN SER ALA ASP ALA ASP ARG ALA ARG SEQRES 6 F 100 GLU LYS LEU HIS GLY THR VAL VAL GLU GLY ARG LYS ILE SEQRES 7 F 100 GLU VAL ASN ASN ALA THR ALA ARG VAL MET THR ASN LYS SEQRES 8 F 100 LYS THR VAL ASN PRO TYR THR ASN GLY HET SO4 A 201 5 HET MES A 202 25 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET MES C 201 25 HET SO4 D 201 5 HET PG4 D 202 31 HET SO4 E 201 5 HET MES E 202 25 HET SO4 F 201 5 HET MES F 202 25 HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 7 SO4 7(O4 S 2-) FORMUL 8 MES 4(C6 H13 N O4 S) FORMUL 14 PG4 C8 H18 O5 FORMUL 19 HOH *331(H2 O) HELIX 1 AA1 ARG A 21 GLN A 31 1 11 HELIX 2 AA2 ASN A 57 HIS A 69 1 13 HELIX 3 AA3 GLU B 3 GLN B 7 5 5 HELIX 4 AA4 ARG B 21 GLN B 31 1 11 HELIX 5 AA5 ASN B 57 HIS B 69 1 13 HELIX 6 AA6 ARG C 21 GLN C 31 1 11 HELIX 7 AA7 ASN C 57 HIS C 69 1 13 HELIX 8 AA8 ARG D 21 GLY D 30 1 10 HELIX 9 AA9 GLN D 31 GLY D 33 5 3 HELIX 10 AB1 ASN D 57 HIS D 69 1 13 HELIX 11 AB2 ARG E 21 GLY E 30 1 10 HELIX 12 AB3 GLN E 31 GLY E 33 5 3 HELIX 13 AB4 ASN E 57 HIS E 69 1 13 HELIX 14 AB5 ARG F 21 GLN F 31 1 11 HELIX 15 AB6 ASN F 57 HIS F 69 1 13 SHEET 1 AA1 4 ILE A 35 ASN A 43 0 SHEET 2 AA1 4 GLY A 46 PHE A 55 -1 O PHE A 52 N GLU A 39 SHEET 3 AA1 4 LYS A 9 SER A 14 -1 N LEU A 11 O VAL A 53 SHEET 4 AA1 4 GLU A 79 ASN A 82 -1 O ASN A 81 N HIS A 12 SHEET 1 AA2 2 VAL A 72 VAL A 73 0 SHEET 2 AA2 2 ARG A 76 LYS A 77 -1 O ARG A 76 N VAL A 73 SHEET 1 AA3 4 ILE B 35 ASN B 43 0 SHEET 2 AA3 4 GLY B 46 PHE B 55 -1 O LYS B 48 N ILE B 41 SHEET 3 AA3 4 LYS B 9 SER B 14 -1 N LEU B 11 O VAL B 53 SHEET 4 AA3 4 GLU B 79 ASN B 82 -1 O ASN B 81 N HIS B 12 SHEET 1 AA4 2 VAL B 72 VAL B 73 0 SHEET 2 AA4 2 ARG B 76 LYS B 77 -1 O ARG B 76 N VAL B 73 SHEET 1 AA5 4 ILE C 35 ASN C 43 0 SHEET 2 AA5 4 GLY C 46 PHE C 55 -1 O LYS C 48 N ILE C 41 SHEET 3 AA5 4 LYS C 9 SER C 14 -1 N LYS C 9 O PHE C 55 SHEET 4 AA5 4 GLU C 79 ASN C 82 -1 O GLU C 79 N SER C 14 SHEET 1 AA6 2 VAL C 72 VAL C 73 0 SHEET 2 AA6 2 ARG C 76 LYS C 77 -1 O ARG C 76 N VAL C 73 SHEET 1 AA7 4 ILE D 35 ASN D 43 0 SHEET 2 AA7 4 GLY D 46 PHE D 55 -1 O LYS D 48 N ILE D 41 SHEET 3 AA7 4 LYS D 9 SER D 14 -1 N LEU D 11 O VAL D 53 SHEET 4 AA7 4 GLU D 79 ASN D 82 -1 O ASN D 81 N HIS D 12 SHEET 1 AA8 2 VAL D 72 VAL D 73 0 SHEET 2 AA8 2 ARG D 76 LYS D 77 -1 O ARG D 76 N VAL D 73 SHEET 1 AA9 4 ILE E 35 ASN E 43 0 SHEET 2 AA9 4 GLY E 46 PHE E 55 -1 O LYS E 48 N ILE E 41 SHEET 3 AA9 4 LYS E 9 SER E 14 -1 N LEU E 11 O VAL E 53 SHEET 4 AA9 4 GLU E 79 ASN E 82 -1 O ASN E 81 N HIS E 12 SHEET 1 AB1 2 VAL E 72 VAL E 73 0 SHEET 2 AB1 2 ARG E 76 LYS E 77 -1 O ARG E 76 N VAL E 73 SHEET 1 AB2 4 ILE F 35 ASN F 43 0 SHEET 2 AB2 4 GLY F 46 PHE F 55 -1 O LYS F 48 N ILE F 41 SHEET 3 AB2 4 LYS F 9 SER F 14 -1 N LYS F 9 O PHE F 55 SHEET 4 AB2 4 GLU F 79 ASN F 82 -1 O ASN F 81 N HIS F 12 SHEET 1 AB3 2 VAL F 72 VAL F 73 0 SHEET 2 AB3 2 ARG F 76 LYS F 77 -1 O ARG F 76 N VAL F 73 SITE 1 AC1 8 PHE A 18 ARG A 21 GLY A 46 SER A 47 SITE 2 AC1 8 HOH A 303 ARG B 63 GLU B 66 LYS B 67 SITE 1 AC2 9 GLU A 74 GLY A 75 ARG A 76 GLY B 30 SITE 2 AC2 9 GLN B 31 PHE B 32 ASP B 60 SO4 B 201 SITE 3 AC2 9 HOH B 361 SITE 1 AC3 9 PRO A 17 PHE A 18 ARG A 19 ARG A 76 SITE 2 AC3 9 MES A 202 HOH A 322 ARG B 63 HOH B 325 SITE 3 AC3 9 HOH B 334 SITE 1 AC4 9 PHE B 18 ARG B 19 ARG B 21 GLY B 46 SITE 2 AC4 9 SER B 47 HOH B 301 HOH B 311 GLU C 74 SITE 3 AC4 9 GLY C 75 SITE 1 AC5 4 ARG B 45 HOH B 303 LYS D 34 GLU D 56 SITE 1 AC6 5 LYS B 5 LYS C 9 ASP C 62 ASN C 82 SITE 2 AC6 5 HOH C 301 SITE 1 AC7 8 PHE D 18 ARG D 21 GLY D 46 SER D 47 SITE 2 AC7 8 HOH D 306 ARG E 63 GLU E 66 LYS E 67 SITE 1 AC8 8 ASN D 15 GLY D 75 ARG D 76 GLN E 31 SITE 2 AC8 8 PHE E 32 ASP E 60 SO4 E 201 HOH E 347 SITE 1 AC9 10 PRO D 17 PHE D 18 ARG D 19 ARG D 76 SITE 2 AC9 10 PG4 D 202 HOH D 305 HOH D 319 ARG E 63 SITE 3 AC9 10 HOH E 324 HOH E 333 SITE 1 AD1 4 PRO E 17 PHE E 18 ARG E 19 ARG E 76 SITE 1 AD2 6 PRO F 17 PHE F 18 ARG F 76 HOH F 306 SITE 2 AD2 6 HOH F 308 HOH F 319 SITE 1 AD3 8 HOH E 353 PHE F 18 ARG F 45 HOH F 301 SITE 2 AD3 8 HOH F 310 HOH F 311 HOH F 314 HOH F 341 CRYST1 68.980 77.617 106.386 90.00 93.99 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014497 0.000000 0.001011 0.00000 SCALE2 0.000000 0.012884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009423 0.00000