PDB Short entry for 4ZKC HEADER VIRAL PROTEIN/CYTOKINE 30-APR-15 4ZKC TITLE THE CHEMOKINE BINDING PROTEIN OF ORF VIRUS COMPLEXED WITH CCL7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEMOKINE BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-286; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: C-C MOTIF CHEMOKINE 7; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 24-99; COMPND 10 SYNONYM: MONOCYTE CHEMOATTRACTANT PROTEIN 3,MONOCYTE CHEMOTACTIC COMPND 11 PROTEIN 3,MCP-3,NC28,SMALL-INDUCIBLE CYTOKINE A7; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORF VIRUS (STRAIN NZ2); SOURCE 3 ORGANISM_COMMON: ORFV; SOURCE 4 ORGANISM_TAXID: 10259; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293-6E; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTT5; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CCL7, MCP3, SCYA6, SCYA7; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: HEK 293-6E; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PTT5 KEYWDS COMPLEX, ORF VIRUS CHEMOKINE BINDING PROTEIN, CCL7, VIRAL PROTEIN- KEYWDS 2 CYTOKINE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.KNAPP,Y.NAKATANI,K.L.KRAUSE REVDAT 5 27-SEP-23 4ZKC 1 HETSYN REVDAT 4 29-JUL-20 4ZKC 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUN-18 4ZKC 1 TITLE SOURCE KEYWDS JRNL REVDAT 3 2 1 REMARK REVDAT 2 15-JUL-15 4ZKC 1 JRNL REVDAT 1 08-JUL-15 4ZKC 0 JRNL AUTH R.M.COUNAGO,K.M.KNAPP,Y.NAKATANI,S.B.FLEMING,M.CORBETT, JRNL AUTH 2 L.M.WISE,A.A.MERCER,K.L.KRAUSE JRNL TITL STRUCTURES OF ORF VIRUS CHEMOKINE BINDING PROTEIN IN COMPLEX JRNL TITL 2 WITH HOST CHEMOKINES REVEAL CLUES TO BROAD BINDING JRNL TITL 3 SPECIFICITY. JRNL REF STRUCTURE V. 23 1199 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26095031 JRNL DOI 10.1016/J.STR.2015.04.023 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 9362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.327 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 526 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 584 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1811 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 102.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.07000 REMARK 3 B22 (A**2) : 4.07000 REMARK 3 B33 (A**2) : -8.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.849 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.475 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.420 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 50.881 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.896 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.845 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1921 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1535 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2652 ; 1.467 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3457 ; 0.832 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 8.091 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;35.138 ;24.464 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 180 ;20.169 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;12.469 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 330 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2284 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 405 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1105 ; 2.359 ; 5.504 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1104 ; 2.357 ; 5.503 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1376 ; 3.853 ; 8.251 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1377 ; 3.852 ; 8.252 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 816 ; 3.152 ; 5.985 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 817 ; 3.150 ; 5.986 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1276 ; 4.769 ; 8.885 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2201 ; 6.488 ;47.144 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2202 ; 6.487 ;47.153 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3411 13.7755 375.4457 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: 0.2887 REMARK 3 T33: 0.3774 T12: 0.0606 REMARK 3 T13: 0.0692 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 2.6244 L22: 3.6334 REMARK 3 L33: 8.9856 L12: 0.7137 REMARK 3 L13: 0.7827 L23: 1.9104 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: -0.7429 S13: 0.0578 REMARK 3 S21: -0.1987 S22: -0.2970 S23: -0.6364 REMARK 3 S31: 0.3238 S32: 0.4988 S33: 0.3447 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7271 -4.2425 384.4755 REMARK 3 T TENSOR REMARK 3 T11: 0.8969 T22: 0.7161 REMARK 3 T33: 0.6759 T12: -0.0320 REMARK 3 T13: 0.0203 T23: 0.1513 REMARK 3 L TENSOR REMARK 3 L11: 8.6418 L22: 8.3200 REMARK 3 L33: 10.8392 L12: 1.0772 REMARK 3 L13: -2.8459 L23: -2.3568 REMARK 3 S TENSOR REMARK 3 S11: 0.3449 S12: -0.5512 S13: -0.9949 REMARK 3 S21: 0.8252 S22: -0.5309 S23: -0.1384 REMARK 3 S31: 1.1611 S32: 0.2565 S33: 0.1861 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 93.2 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9921 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 71.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4P5I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE PH5.6, 2.0M REMARK 280 AMMONIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.78000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.71500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.17000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.71500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.39000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.71500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.71500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.17000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.71500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.71500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.39000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 ASN A 10 REMARK 465 GLU A 158 REMARK 465 PRO A 159 REMARK 465 THR A 160 REMARK 465 THR A 161 REMARK 465 THR A 162 REMARK 465 PRO A 163 REMARK 465 PRO A 164 REMARK 465 SER A 165 REMARK 465 PRO A 166 REMARK 465 VAL A 167 REMARK 465 THR A 168 REMARK 465 THR A 169 REMARK 465 THR A 170 REMARK 465 LEU A 171 REMARK 465 SER A 172 REMARK 465 SER A 173 REMARK 465 THR A 174 REMARK 465 THR A 175 REMARK 465 PRO A 176 REMARK 465 ASP A 177 REMARK 465 LEU A 178 REMARK 465 ASN A 179 REMARK 465 GLU A 180 REMARK 465 GLU A 181 REMARK 465 ASN A 182 REMARK 465 THR A 183 REMARK 465 GLU A 184 REMARK 465 ASN A 185 REMARK 465 THR A 186 REMARK 465 PRO A 187 REMARK 465 THR A 188 REMARK 465 THR A 189 REMARK 465 THR A 190 REMARK 465 GLY A 191 REMARK 465 ALA A 192 REMARK 465 SER A 193 REMARK 465 VAL A 194 REMARK 465 ASP A 195 REMARK 465 ARG A 196 REMARK 465 LYS A 197 REMARK 465 ARG A 198 REMARK 465 ASN A 199 REMARK 465 ASN A 270 REMARK 465 GLU A 271 REMARK 465 ASN A 272 REMARK 465 LEU A 273 REMARK 465 TYR A 274 REMARK 465 PHE A 275 REMARK 465 GLN A 276 REMARK 465 GLN B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 465 GLY B 4 REMARK 465 ILE B 5 REMARK 465 ASN B 6 REMARK 465 THR B 7 REMARK 465 SER B 8 REMARK 465 LYS B 69 REMARK 465 LYS B 70 REMARK 465 THR B 71 REMARK 465 GLN B 72 REMARK 465 THR B 73 REMARK 465 PRO B 74 REMARK 465 LYS B 75 REMARK 465 LEU B 76 REMARK 465 HIS B 77 REMARK 465 HIS B 78 REMARK 465 HIS B 79 REMARK 465 HIS B 80 REMARK 465 HIS B 81 REMARK 465 HIS B 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 ASN A 16 CG OD1 ND2 REMARK 470 SER A 19 OG REMARK 470 THR A 20 OG1 CG2 REMARK 470 ASN A 22 CG OD1 ND2 REMARK 470 ASP A 23 CG OD1 OD2 REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 42 CG CD1 CD2 REMARK 470 MET A 50 CG SD CE REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 ILE A 60 CG1 CG2 CD1 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 SER A 63 OG REMARK 470 THR A 64 OG1 CG2 REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 SER A 115 OG REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 121 CG1 CG2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 LEU A 127 CG CD1 CD2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 LEU A 139 CG CD1 CD2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LEU A 143 CG CD1 CD2 REMARK 470 ASP A 151 CG OD1 OD2 REMARK 470 ASN A 152 CG OD1 ND2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 ASP A 202 CG OD1 OD2 REMARK 470 LEU A 207 CG CD1 CD2 REMARK 470 LEU A 208 CG CD1 CD2 REMARK 470 ILE A 228 CG1 CG2 CD1 REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 LEU A 236 CG CD1 CD2 REMARK 470 SER A 237 OG REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ASP A 244 CG OD1 OD2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 ILE A 252 CG1 CG2 CD1 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 THR B 9 OG1 CG2 REMARK 470 THR B 10 OG1 CG2 REMARK 470 TYR B 13 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 17 CG OD1 ND2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 ILE B 20 CG1 CG2 CD1 REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 GLN B 23 CG CD OE1 NE2 REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 25 CG CD1 CD2 REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 SER B 27 OG REMARK 470 TYR B 28 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 30 CG CD NE CZ NH1 NH2 REMARK 470 THR B 32 OG1 CG2 REMARK 470 SER B 33 OG REMARK 470 SER B 34 OG REMARK 470 HIS B 35 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 VAL B 41 CG1 CG2 REMARK 470 ILE B 42 CG1 CG2 CD1 REMARK 470 PHE B 43 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LEU B 47 CG CD1 CD2 REMARK 470 ASP B 48 CG OD1 OD2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 ILE B 51 CG1 CG2 CD1 REMARK 470 ASP B 54 CG OD1 OD2 REMARK 470 THR B 56 OG1 CG2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 TRP B 59 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 59 CZ3 CH2 REMARK 470 VAL B 60 CG1 CG2 REMARK 470 GLN B 61 CG CD OE1 NE2 REMARK 470 ASP B 62 CG OD1 OD2 REMARK 470 PHE B 63 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET B 64 CG SD CE REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 HIS B 66 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 67 CG CD1 CD2 REMARK 470 ASP B 68 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 -71.76 -59.15 REMARK 500 ASP A 23 30.39 -95.99 REMARK 500 ASN A 130 71.50 56.82 REMARK 500 GLU A 142 122.68 -30.30 REMARK 500 ASP A 151 -132.96 59.07 REMARK 500 ASP A 202 104.97 -41.22 REMARK 500 SER A 237 75.79 -153.07 REMARK 500 TYR A 242 113.08 -161.00 REMARK 500 ASP A 244 86.41 -53.27 REMARK 500 ASP A 254 73.33 -158.52 REMARK 500 ASN A 267 127.66 -33.05 REMARK 500 GLU B 26 -86.56 -155.50 REMARK 500 HIS B 35 -76.88 -68.69 REMARK 500 GLU B 50 79.59 -103.22 REMARK 500 THR B 56 -32.11 92.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZK9 RELATED DB: PDB REMARK 900 RELATED ID: 4ZKB RELATED DB: PDB DBREF 4ZKC A 1 270 UNP Q2F862 Q2F862_ORFV 17 286 DBREF 4ZKC B 1 76 UNP P80098 CCL7_HUMAN 24 99 SEQADV 4ZKC GLU A 271 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKC ASN A 272 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKC LEU A 273 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKC TYR A 274 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKC PHE A 275 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKC GLN A 276 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKC HIS B 77 UNP P80098 EXPRESSION TAG SEQADV 4ZKC HIS B 78 UNP P80098 EXPRESSION TAG SEQADV 4ZKC HIS B 79 UNP P80098 EXPRESSION TAG SEQADV 4ZKC HIS B 80 UNP P80098 EXPRESSION TAG SEQADV 4ZKC HIS B 81 UNP P80098 EXPRESSION TAG SEQADV 4ZKC HIS B 82 UNP P80098 EXPRESSION TAG SEQRES 1 A 276 ALA PRO LEU LEU GLU SER GLN ARG SER ASN SER GLU GLU SEQRES 2 A 276 LYS ALA ASN PHE CYS SER THR HIS ASN ASP GLU VAL TYR SEQRES 3 A 276 ALA ARG PHE ARG LEU GLN MET ARG VAL GLY VAL ARG HIS SEQRES 4 A 276 SER PRO LEU TYR THR PRO SER ASN MET CYS MET LEU ASP SEQRES 5 A 276 ILE GLU ASP SER VAL GLU ASP ILE GLU GLU SER THR GLU SEQRES 6 A 276 LYS GLU TYR ALA SER THR ALA THR GLY GLU ALA ALA GLY SEQRES 7 A 276 VAL ASN VAL SER VAL ALA LEU VAL GLY GLU GLY VAL SER SEQRES 8 A 276 ILE PRO PHE SER TYR ILE GLY LEU GLY PHE ASN PRO SER SEQRES 9 A 276 LEU GLU ASP SER TYR LEU TYR VAL ASN VAL SER SER ARG SEQRES 10 A 276 ALA PRO TRP VAL LYS GLN THR SER ASP LEU SER ALA ASN SEQRES 11 A 276 GLY GLY TRP GLY ILE LYS GLN VAL LEU GLU LYS GLU LEU SEQRES 12 A 276 LEU ALA ILE GLN ILE GLY CYS ASP ASN GLN LYS PHE PRO SEQRES 13 A 276 GLU GLU PRO THR THR THR PRO PRO SER PRO VAL THR THR SEQRES 14 A 276 THR LEU SER SER THR THR PRO ASP LEU ASN GLU GLU ASN SEQRES 15 A 276 THR GLU ASN THR PRO THR THR THR GLY ALA SER VAL ASP SEQRES 16 A 276 ARG LYS ARG ASN PRO ALA ASP ILE ASP PHE SER LEU LEU SEQRES 17 A 276 VAL ASP PRO ARG CYS VAL THR SER VAL ASP LEU HIS VAL SEQRES 18 A 276 GLU LEU ARG ASP ALA CYS ILE ASP TYR LYS GLN GLU SER SEQRES 19 A 276 PRO LEU SER LEU LYS GLY LYS TYR GLY ASP GLY GLU LEU SEQRES 20 A 276 VAL LYS LYS GLU ILE LYS ASP VAL GLY LYS ASN HIS ASN SEQRES 21 A 276 MET CYS SER LEU ASN LEU ASN PRO GLY ASN GLU ASN LEU SEQRES 22 A 276 TYR PHE GLN SEQRES 1 B 82 GLN PRO VAL GLY ILE ASN THR SER THR THR CYS CYS TYR SEQRES 2 B 82 ARG PHE ILE ASN LYS LYS ILE PRO LYS GLN ARG LEU GLU SEQRES 3 B 82 SER TYR ARG ARG THR THR SER SER HIS CYS PRO ARG GLU SEQRES 4 B 82 ALA VAL ILE PHE LYS THR LYS LEU ASP LYS GLU ILE CYS SEQRES 5 B 82 ALA ASP PRO THR GLN LYS TRP VAL GLN ASP PHE MET LYS SEQRES 6 B 82 HIS LEU ASP LYS LYS THR GLN THR PRO LYS LEU HIS HIS SEQRES 7 B 82 HIS HIS HIS HIS MODRES 4ZKC NAG C 1 NAG -D MODRES 4ZKC NAG C 2 NAG -D MODRES 4ZKC NAG D 1 NAG -D MODRES 4ZKC NAG D 2 NAG -D HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 HELIX 1 AA1 GLU A 12 HIS A 21 1 10 HELIX 2 AA2 SER A 128 LYS A 141 1 14 HELIX 3 AA3 CYS A 227 LYS A 231 5 5 HELIX 4 AA4 ASP A 244 LYS A 253 1 10 HELIX 5 AA5 GLN B 57 ASP B 68 1 12 SHEET 1 AA1 6 SER A 237 TYR A 242 0 SHEET 2 AA1 6 VAL A 214 ASP A 225 -1 N LEU A 223 O LEU A 238 SHEET 3 AA1 6 ALA A 27 VAL A 37 -1 N ARG A 30 O GLU A 222 SHEET 4 AA1 6 SER A 108 SER A 116 -1 O SER A 108 N VAL A 37 SHEET 5 AA1 6 PHE A 94 PHE A 101 -1 N GLY A 98 O ASN A 113 SHEET 6 AA1 6 ASN A 260 ASN A 265 -1 O ASN A 260 N PHE A 101 SHEET 1 AA2 6 CYS A 49 SER A 56 0 SHEET 2 AA2 6 GLU A 67 ALA A 76 -1 O THR A 71 N GLU A 54 SHEET 3 AA2 6 VAL A 79 GLU A 88 -1 O VAL A 83 N ALA A 72 SHEET 4 AA2 6 LEU A 143 GLY A 149 -1 O LEU A 143 N VAL A 86 SHEET 5 AA2 6 PHE A 205 VAL A 209 1 O SER A 206 N ILE A 146 SHEET 6 AA2 6 CYS B 11 CYS B 12 -1 O CYS B 11 N VAL A 209 SHEET 1 AA3 3 LEU B 25 ARG B 30 0 SHEET 2 AA3 3 VAL B 41 THR B 45 -1 O ILE B 42 N ARG B 29 SHEET 3 AA3 3 ILE B 51 ALA B 53 -1 O ILE B 51 N PHE B 43 SSBOND 1 CYS A 18 CYS A 227 1555 1555 2.08 SSBOND 2 CYS A 49 CYS A 262 1555 1555 2.04 SSBOND 3 CYS A 150 CYS A 213 1555 1555 2.03 SSBOND 4 CYS B 11 CYS B 36 1555 1555 2.04 SSBOND 5 CYS B 12 CYS B 52 1555 1555 2.04 LINK ND2 ASN A 80 C1 NAG C 1 1555 1555 1.47 LINK ND2 ASN A 113 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 CRYST1 77.430 77.430 181.560 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005508 0.00000