PDB Short entry for 4ZNC HEADER PROTEIN BINDING 04-MAY-15 4ZNC TITLE FC FRAGMENT OF HUMAN IGG IN COMPLEX WITH THE C DOMAIN OF TITLE 2 STAPHYLOCOCCAL PROTEIN A MUTANT - Q9W COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN A; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 270-327; COMPND 5 SYNONYM: IGG-BINDING PROTEIN A,STAPHYLOCOCCAL PROTEIN A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: IG GAMMA-3 CHAIN C REGION; COMPND 10 CHAIN: D, E, F; COMPND 11 FRAGMENT: UNP RESIDUES 168-377; COMPND 12 SYNONYM: HDC,HEAVY CHAIN DISEASE PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: IGHG3; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: ROSETTAGAMI 2 KEYWDS STAPHYLOCOCCAL PROTEIN A, SPA, THREE-HELIX-BUNDLE, ANTIBODY, IGG, KEYWDS 2 PROTEIN-BINDING DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.N.DEIS,T.G.OAS REVDAT 3 29-JUL-15 4ZNC 1 JRNL REVDAT 2 22-JUL-15 4ZNC 1 REMARK REVDAT 1 15-JUL-15 4ZNC 0 JRNL AUTH L.N.DEIS,Q.WU,Y.WANG,Y.QI,K.G.DANIELS,P.ZHOU,T.G.OAS JRNL TITL SUPPRESSION OF CONFORMATIONAL HETEROGENEITY AT A JRNL TITL 2 PROTEIN-PROTEIN INTERFACE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 9028 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26157136 JRNL DOI 10.1073/PNAS.1424724112 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1664 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 52860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.620 REMARK 3 FREE R VALUE TEST SET COUNT : 1914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8235 - 5.4885 1.00 3918 157 0.1607 0.1967 REMARK 3 2 5.4885 - 4.3591 1.00 3883 145 0.1411 0.1863 REMARK 3 3 4.3591 - 3.8088 1.00 3864 146 0.1707 0.1967 REMARK 3 4 3.8088 - 3.4609 1.00 3847 145 0.2033 0.2661 REMARK 3 5 3.4609 - 3.2131 1.00 3838 138 0.2322 0.2398 REMARK 3 6 3.2131 - 3.0237 0.99 3783 148 0.2441 0.3103 REMARK 3 7 3.0237 - 2.8724 0.98 3786 144 0.2584 0.3729 REMARK 3 8 2.8724 - 2.7474 0.97 3748 129 0.2516 0.3148 REMARK 3 9 2.7474 - 2.6417 0.96 3627 147 0.2531 0.2877 REMARK 3 10 2.6417 - 2.5505 0.94 3582 139 0.2549 0.3053 REMARK 3 11 2.5505 - 2.4708 0.92 3549 127 0.2507 0.3293 REMARK 3 12 2.4708 - 2.4002 0.90 3464 128 0.2415 0.3164 REMARK 3 13 2.4002 - 2.3370 0.88 3366 125 0.2633 0.3069 REMARK 3 14 2.3370 - 2.2800 0.70 2691 96 0.2850 0.3803 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 6363 REMARK 3 ANGLE : 1.506 8642 REMARK 3 CHIRALITY : 0.063 946 REMARK 3 PLANARITY : 0.008 1119 REMARK 3 DIHEDRAL : 15.422 2392 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZNC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000209533. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZMD, 4WWI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 5000 MME, AMMONIUM SULFATE, SODIUM REMARK 280 ACETATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.97550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.97550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 58 REMARK 465 ALA B 1 REMARK 465 ASP B 2 REMARK 465 ASN B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 58 REMARK 465 ALA C 1 REMARK 465 ASP C 2 REMARK 465 ASN C 3 REMARK 465 LYS C 4 REMARK 465 LYS C 58 REMARK 465 PRO D 445 REMARK 465 GLY D 446 REMARK 465 LYS D 447 REMARK 465 GLY D 448 REMARK 465 SER D 449 REMARK 465 LEU D 450 REMARK 465 GLU D 451 REMARK 465 HIS D 452 REMARK 465 HIS D 453 REMARK 465 HIS D 454 REMARK 465 HIS D 455 REMARK 465 HIS D 456 REMARK 465 HIS D 457 REMARK 465 PRO E 445 REMARK 465 GLY E 446 REMARK 465 LYS E 447 REMARK 465 GLY E 448 REMARK 465 SER E 449 REMARK 465 LEU E 450 REMARK 465 GLU E 451 REMARK 465 HIS E 452 REMARK 465 HIS E 453 REMARK 465 HIS E 454 REMARK 465 HIS E 455 REMARK 465 HIS E 456 REMARK 465 HIS E 457 REMARK 465 PRO F 238 REMARK 465 SER F 239 REMARK 465 ARG F 292 REMARK 465 GLU F 293 REMARK 465 GLU F 294 REMARK 465 GLN F 295 REMARK 465 PHE F 296 REMARK 465 ASN F 297 REMARK 465 SER F 298 REMARK 465 THR F 299 REMARK 465 PHE F 300 REMARK 465 ARG F 301 REMARK 465 PRO F 445 REMARK 465 GLY F 446 REMARK 465 LYS F 447 REMARK 465 GLY F 448 REMARK 465 SER F 449 REMARK 465 LEU F 450 REMARK 465 GLU F 451 REMARK 465 HIS F 452 REMARK 465 HIS F 453 REMARK 465 HIS F 454 REMARK 465 HIS F 455 REMARK 465 HIS F 456 REMARK 465 HIS F 457 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 37 HG SER B 39 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS F 326 HE3 LYS F 326 2659 0.97 REMARK 500 HG3 LYS F 326 HE2 LYS F 326 2659 1.22 REMARK 500 C LYS F 326 HE3 LYS F 326 2659 1.59 REMARK 500 O LYS F 326 CE LYS F 326 2659 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 27 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 CYS D 261 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 CYS D 321 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG D 344 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 MET E 252 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 CYS E 321 CA - CB - SG ANGL. DEV. = 9.3 DEGREES REMARK 500 PRO F 271 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 CYS F 321 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 54 -9.18 -55.44 REMARK 500 VAL C 40 44.32 -105.22 REMARK 500 HIS D 285 11.48 -140.74 REMARK 500 ASP D 376 108.77 -47.46 REMARK 500 PRO E 329 -71.38 -49.97 REMARK 500 PRO E 374 -167.37 -72.24 REMARK 500 VAL F 266 95.06 -65.36 REMARK 500 GLU F 269 -82.98 -45.84 REMARK 500 ASP F 280 39.96 37.94 REMARK 500 LEU F 328 117.91 78.46 REMARK 500 PRO F 374 -170.31 -68.81 REMARK 500 ASP F 376 108.41 -51.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WWI RELATED DB: PDB REMARK 900 4WWI CONTAINS THE WILD-TYPE C DOMAIN IN COMPLEX WITH FC FRAGMENT REMARK 900 FROM IGG. REMARK 900 RELATED ID: 4ZMD RELATED DB: PDB REMARK 900 4ZMD CONTAINS THE APO VERSION OF THE C DOMAIN OF STAPHYLOCOCCAL REMARK 900 PROTEIN A MUTANT - Q9W. DBREF 4ZNC A 1 58 UNP P38507 SPA_STAAU 270 327 DBREF 4ZNC B 1 58 UNP P38507 SPA_STAAU 270 327 DBREF 4ZNC C 1 58 UNP P38507 SPA_STAAU 270 327 DBREF 4ZNC D 238 447 UNP P01860 IGHG3_HUMAN 168 377 DBREF 4ZNC E 238 447 UNP P01860 IGHG3_HUMAN 168 377 DBREF 4ZNC F 238 447 UNP P01860 IGHG3_HUMAN 168 377 SEQADV 4ZNC TRP A 9 UNP P38507 GLN 278 ENGINEERED MUTATION SEQADV 4ZNC TRP B 9 UNP P38507 GLN 278 ENGINEERED MUTATION SEQADV 4ZNC TRP C 9 UNP P38507 GLN 278 ENGINEERED MUTATION SEQADV 4ZNC PHE D 296 UNP P01860 TYR 226 CONFLICT SEQADV 4ZNC HIS D 435 UNP P01860 ARG 365 CONFLICT SEQADV 4ZNC TYR D 436 UNP P01860 PHE 366 CONFLICT SEQADV 4ZNC GLY D 448 UNP P01860 EXPRESSION TAG SEQADV 4ZNC SER D 449 UNP P01860 EXPRESSION TAG SEQADV 4ZNC LEU D 450 UNP P01860 EXPRESSION TAG SEQADV 4ZNC GLU D 451 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS D 452 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS D 453 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS D 454 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS D 455 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS D 456 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS D 457 UNP P01860 EXPRESSION TAG SEQADV 4ZNC PHE E 296 UNP P01860 TYR 226 CONFLICT SEQADV 4ZNC HIS E 435 UNP P01860 ARG 365 CONFLICT SEQADV 4ZNC TYR E 436 UNP P01860 PHE 366 CONFLICT SEQADV 4ZNC GLY E 448 UNP P01860 EXPRESSION TAG SEQADV 4ZNC SER E 449 UNP P01860 EXPRESSION TAG SEQADV 4ZNC LEU E 450 UNP P01860 EXPRESSION TAG SEQADV 4ZNC GLU E 451 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS E 452 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS E 453 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS E 454 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS E 455 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS E 456 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS E 457 UNP P01860 EXPRESSION TAG SEQADV 4ZNC PHE F 296 UNP P01860 TYR 226 CONFLICT SEQADV 4ZNC HIS F 435 UNP P01860 ARG 365 CONFLICT SEQADV 4ZNC TYR F 436 UNP P01860 PHE 366 CONFLICT SEQADV 4ZNC GLY F 448 UNP P01860 EXPRESSION TAG SEQADV 4ZNC SER F 449 UNP P01860 EXPRESSION TAG SEQADV 4ZNC LEU F 450 UNP P01860 EXPRESSION TAG SEQADV 4ZNC GLU F 451 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS F 452 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS F 453 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS F 454 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS F 455 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS F 456 UNP P01860 EXPRESSION TAG SEQADV 4ZNC HIS F 457 UNP P01860 EXPRESSION TAG SEQRES 1 A 58 ALA ASP ASN LYS PHE ASN LYS GLU TRP GLN ASN ALA PHE SEQRES 2 A 58 TYR GLU ILE LEU HIS LEU PRO ASN LEU THR GLU GLU GLN SEQRES 3 A 58 ARG ASN GLY PHE ILE GLN SER LEU LYS ASP ASP PRO SER SEQRES 4 A 58 VAL SER LYS GLU ILE LEU ALA GLU ALA LYS LYS LEU ASN SEQRES 5 A 58 ASP ALA GLN ALA PRO LYS SEQRES 1 B 58 ALA ASP ASN LYS PHE ASN LYS GLU TRP GLN ASN ALA PHE SEQRES 2 B 58 TYR GLU ILE LEU HIS LEU PRO ASN LEU THR GLU GLU GLN SEQRES 3 B 58 ARG ASN GLY PHE ILE GLN SER LEU LYS ASP ASP PRO SER SEQRES 4 B 58 VAL SER LYS GLU ILE LEU ALA GLU ALA LYS LYS LEU ASN SEQRES 5 B 58 ASP ALA GLN ALA PRO LYS SEQRES 1 C 58 ALA ASP ASN LYS PHE ASN LYS GLU TRP GLN ASN ALA PHE SEQRES 2 C 58 TYR GLU ILE LEU HIS LEU PRO ASN LEU THR GLU GLU GLN SEQRES 3 C 58 ARG ASN GLY PHE ILE GLN SER LEU LYS ASP ASP PRO SER SEQRES 4 C 58 VAL SER LYS GLU ILE LEU ALA GLU ALA LYS LYS LEU ASN SEQRES 5 C 58 ASP ALA GLN ALA PRO LYS SEQRES 1 D 220 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 2 D 220 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 3 D 220 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL GLN PHE LYS SEQRES 4 D 220 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 5 D 220 LYS PRO ARG GLU GLU GLN PHE ASN SER THR PHE ARG VAL SEQRES 6 D 220 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 7 D 220 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 8 D 220 PRO ALA PRO ILE GLU LYS THR ILE SER LYS THR LYS GLY SEQRES 9 D 220 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 10 D 220 ARG GLU GLU MET THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 11 D 220 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 12 D 220 TRP GLU SER SER GLY GLN PRO GLU ASN ASN TYR ASN THR SEQRES 13 D 220 THR PRO PRO MET LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 14 D 220 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 15 D 220 GLY ASN ILE PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 16 D 220 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER PRO SEQRES 17 D 220 GLY LYS GLY SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 220 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 2 E 220 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 3 E 220 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL GLN PHE LYS SEQRES 4 E 220 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 5 E 220 LYS PRO ARG GLU GLU GLN PHE ASN SER THR PHE ARG VAL SEQRES 6 E 220 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 7 E 220 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 8 E 220 PRO ALA PRO ILE GLU LYS THR ILE SER LYS THR LYS GLY SEQRES 9 E 220 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 10 E 220 ARG GLU GLU MET THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 11 E 220 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 12 E 220 TRP GLU SER SER GLY GLN PRO GLU ASN ASN TYR ASN THR SEQRES 13 E 220 THR PRO PRO MET LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 14 E 220 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 15 E 220 GLY ASN ILE PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 16 E 220 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER PRO SEQRES 17 E 220 GLY LYS GLY SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 F 220 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 2 F 220 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 3 F 220 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL GLN PHE LYS SEQRES 4 F 220 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 5 F 220 LYS PRO ARG GLU GLU GLN PHE ASN SER THR PHE ARG VAL SEQRES 6 F 220 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 7 F 220 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 8 F 220 PRO ALA PRO ILE GLU LYS THR ILE SER LYS THR LYS GLY SEQRES 9 F 220 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 10 F 220 ARG GLU GLU MET THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 11 F 220 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 12 F 220 TRP GLU SER SER GLY GLN PRO GLU ASN ASN TYR ASN THR SEQRES 13 F 220 THR PRO PRO MET LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 14 F 220 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 15 F 220 GLY ASN ILE PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 16 F 220 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER PRO SEQRES 17 F 220 GLY LYS GLY SER LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 7 HOH *126(H2 O) HELIX 1 AA1 ASN A 6 HIS A 18 1 13 HELIX 2 AA2 THR A 23 ASP A 37 1 15 HELIX 3 AA3 VAL A 40 ALA A 54 1 15 HELIX 4 AA4 ASN B 6 LEU B 19 1 14 HELIX 5 AA5 THR B 23 ASP B 37 1 15 HELIX 6 AA6 VAL B 40 GLN B 55 1 16 HELIX 7 AA7 ASN C 6 LEU C 19 1 14 HELIX 8 AA8 THR C 23 ASP C 37 1 15 HELIX 9 AA9 VAL C 40 GLN C 55 1 16 HELIX 10 AB1 LYS D 246 MET D 252 1 7 HELIX 11 AB2 LEU D 309 ASN D 315 1 7 HELIX 12 AB3 SER D 354 LYS D 360 5 7 HELIX 13 AB4 LYS D 414 GLN D 419 1 6 HELIX 14 AB5 LEU D 432 ASN D 434 5 3 HELIX 15 AB6 LYS E 246 MET E 252 1 7 HELIX 16 AB7 LEU E 309 ASN E 315 1 7 HELIX 17 AB8 SER E 354 LYS E 360 5 7 HELIX 18 AB9 LYS E 414 GLN E 419 1 6 HELIX 19 AC1 LEU E 432 ASN E 434 5 3 HELIX 20 AC2 LYS F 246 MET F 252 1 7 HELIX 21 AC3 LEU F 309 ASN F 315 1 7 HELIX 22 AC4 SER F 354 LYS F 360 5 7 HELIX 23 AC5 LYS F 414 GLN F 419 1 6 HELIX 24 AC6 LEU F 432 ASN F 434 5 3 SHEET 1 AA1 4 SER D 239 PHE D 243 0 SHEET 2 AA1 4 GLU D 258 VAL D 266 -1 O VAL D 262 N PHE D 241 SHEET 3 AA1 4 PHE D 300 THR D 307 -1 O SER D 304 N CYS D 261 SHEET 4 AA1 4 LYS D 288 THR D 289 -1 N LYS D 288 O VAL D 305 SHEET 1 AA2 4 SER D 239 PHE D 243 0 SHEET 2 AA2 4 GLU D 258 VAL D 266 -1 O VAL D 262 N PHE D 241 SHEET 3 AA2 4 PHE D 300 THR D 307 -1 O SER D 304 N CYS D 261 SHEET 4 AA2 4 GLU D 293 GLU D 294 -1 N GLU D 293 O ARG D 301 SHEET 1 AA3 4 VAL D 282 VAL D 284 0 SHEET 2 AA3 4 GLN D 274 VAL D 279 -1 N VAL D 279 O VAL D 282 SHEET 3 AA3 4 TYR D 319 SER D 324 -1 O LYS D 322 N LYS D 276 SHEET 4 AA3 4 ILE D 332 ILE D 336 -1 O ILE D 332 N VAL D 323 SHEET 1 AA4 4 GLN D 347 LEU D 351 0 SHEET 2 AA4 4 GLN D 362 PHE D 372 -1 O LYS D 370 N GLN D 347 SHEET 3 AA4 4 PHE D 404 ASP D 413 -1 O VAL D 412 N VAL D 363 SHEET 4 AA4 4 TYR D 391 THR D 393 -1 N ASN D 392 O LYS D 409 SHEET 1 AA5 4 GLN D 347 LEU D 351 0 SHEET 2 AA5 4 GLN D 362 PHE D 372 -1 O LYS D 370 N GLN D 347 SHEET 3 AA5 4 PHE D 404 ASP D 413 -1 O VAL D 412 N VAL D 363 SHEET 4 AA5 4 MET D 397 LEU D 398 -1 N MET D 397 O PHE D 405 SHEET 1 AA6 4 GLN D 386 PRO D 387 0 SHEET 2 AA6 4 ALA D 378 SER D 383 -1 N SER D 383 O GLN D 386 SHEET 3 AA6 4 PHE D 423 MET D 428 -1 O MET D 428 N ALA D 378 SHEET 4 AA6 4 TYR D 436 LEU D 441 -1 O LEU D 441 N PHE D 423 SHEET 1 AA7 4 SER E 239 PHE E 243 0 SHEET 2 AA7 4 GLU E 258 VAL E 266 -1 O VAL E 262 N PHE E 241 SHEET 3 AA7 4 PHE E 300 THR E 307 -1 O SER E 304 N CYS E 261 SHEET 4 AA7 4 LYS E 288 THR E 289 -1 N LYS E 288 O VAL E 305 SHEET 1 AA8 4 SER E 239 PHE E 243 0 SHEET 2 AA8 4 GLU E 258 VAL E 266 -1 O VAL E 262 N PHE E 241 SHEET 3 AA8 4 PHE E 300 THR E 307 -1 O SER E 304 N CYS E 261 SHEET 4 AA8 4 GLU E 293 GLU E 294 -1 N GLU E 293 O ARG E 301 SHEET 1 AA9 4 VAL E 282 VAL E 284 0 SHEET 2 AA9 4 GLN E 274 VAL E 279 -1 N VAL E 279 O VAL E 282 SHEET 3 AA9 4 TYR E 319 SER E 324 -1 O LYS E 322 N LYS E 276 SHEET 4 AA9 4 ILE E 332 ILE E 336 -1 O ILE E 336 N TYR E 319 SHEET 1 AB1 4 GLN E 347 LEU E 351 0 SHEET 2 AB1 4 GLN E 362 PHE E 372 -1 O LYS E 370 N GLN E 347 SHEET 3 AB1 4 PHE E 404 ASP E 413 -1 O VAL E 412 N VAL E 363 SHEET 4 AB1 4 TYR E 391 THR E 393 -1 N ASN E 392 O LYS E 409 SHEET 1 AB2 4 GLN E 347 LEU E 351 0 SHEET 2 AB2 4 GLN E 362 PHE E 372 -1 O LYS E 370 N GLN E 347 SHEET 3 AB2 4 PHE E 404 ASP E 413 -1 O VAL E 412 N VAL E 363 SHEET 4 AB2 4 MET E 397 LEU E 398 -1 N MET E 397 O PHE E 405 SHEET 1 AB3 4 GLN E 386 PRO E 387 0 SHEET 2 AB3 4 ALA E 378 SER E 383 -1 N SER E 383 O GLN E 386 SHEET 3 AB3 4 PHE E 423 MET E 428 -1 O SER E 424 N GLU E 382 SHEET 4 AB3 4 TYR E 436 LEU E 441 -1 O LYS E 439 N CYS E 425 SHEET 1 AB4 4 PHE F 241 PHE F 243 0 SHEET 2 AB4 4 GLU F 258 VAL F 262 -1 O VAL F 262 N PHE F 241 SHEET 3 AB4 4 VAL F 303 THR F 307 -1 O SER F 304 N CYS F 261 SHEET 4 AB4 4 ALA F 287 LYS F 290 -1 N LYS F 288 O VAL F 305 SHEET 1 AB5 4 VAL F 282 VAL F 284 0 SHEET 2 AB5 4 VAL F 273 VAL F 279 -1 N VAL F 279 O VAL F 282 SHEET 3 AB5 4 TYR F 319 ASN F 325 -1 O LYS F 322 N LYS F 276 SHEET 4 AB5 4 ILE F 332 ILE F 336 -1 O ILE F 336 N TYR F 319 SHEET 1 AB6 4 GLN F 347 LEU F 351 0 SHEET 2 AB6 4 GLN F 362 PHE F 372 -1 O THR F 366 N LEU F 351 SHEET 3 AB6 4 PHE F 404 ASP F 413 -1 O LEU F 410 N LEU F 365 SHEET 4 AB6 4 TYR F 391 THR F 393 -1 N ASN F 392 O LYS F 409 SHEET 1 AB7 4 GLN F 347 LEU F 351 0 SHEET 2 AB7 4 GLN F 362 PHE F 372 -1 O THR F 366 N LEU F 351 SHEET 3 AB7 4 PHE F 404 ASP F 413 -1 O LEU F 410 N LEU F 365 SHEET 4 AB7 4 MET F 397 LEU F 398 -1 N MET F 397 O PHE F 405 SHEET 1 AB8 3 ALA F 378 GLU F 382 0 SHEET 2 AB8 3 ILE F 422 MET F 428 -1 O SER F 426 N GLU F 380 SHEET 3 AB8 3 TYR F 436 SER F 442 -1 O LYS F 439 N CYS F 425 SSBOND 1 CYS D 261 CYS D 321 1555 1555 2.16 SSBOND 2 CYS E 261 CYS E 321 1555 1555 2.16 SSBOND 3 CYS F 261 CYS F 321 1555 1555 2.11 CISPEP 1 TYR D 373 PRO D 374 0 -5.28 CISPEP 2 TYR E 373 PRO E 374 0 -4.85 CISPEP 3 TYR F 373 PRO F 374 0 -7.26 CRYST1 137.951 87.210 103.248 90.00 91.06 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007249 0.000000 0.000135 0.00000 SCALE2 0.000000 0.011467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009687 0.00000