PDB Short entry for 4ZQ0 HEADER SIGNALING PROTEIN 08-MAY-15 4ZQ0 TITLE CRYSTAL STRUCTURE OF GIARDIA 14-3-3 IN COMPLEX WITH THE PHOSPHOPEPTIDE TITLE 2 A8AP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN; COMPND 3 CHAIN: A, C, B, D; COMPND 4 SYNONYM: PUTATIVE 14-3-3 DOMAIN PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: A8AP PHOSPHOPEPTIDE; COMPND 8 CHAIN: E, F, G, H; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIARDIA LAMBLIA P15; SOURCE 3 ORGANISM_TAXID: 658858; SOURCE 4 GENE: DHA2_6430, GSB_6430; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PHOSPHOPEPTIDE BINDING PROTEIN-PROTEIN INTERACTION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.FIORILLO,A.ILARI REVDAT 2 10-JAN-24 4ZQ0 1 REMARK REVDAT 1 30-MAR-16 4ZQ0 0 JRNL AUTH Y.CAU,A.FIORILLO,M.MORI,A.ILARI,M.BOTTA,M.LALLE JRNL TITL MOLECULAR DYNAMICS SIMULATIONS AND STRUCTURAL ANALYSIS OF JRNL TITL 2 GIARDIA DUODENALIS 14-3-3 PROTEIN-PROTEIN INTERACTIONS. JRNL REF J.CHEM.INF.MODEL. V. 55 2611 2015 JRNL REFN ESSN 1549-960X JRNL PMID 26551337 JRNL DOI 10.1021/ACS.JCIM.5B00452 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.FIORILLO,D.DI MARINO,L.BERTUCCINI,A.VIA,E.POZIO, REMARK 1 AUTH 2 S.CAMERINI,A.ILARI,M.LALLE REMARK 1 TITL THE CRYSTAL STRUCTURE OF GIARDIA DUODENALIS 14-3-3 IN THE REMARK 1 TITL 2 APO FORM: WHEN PROTEIN POST-TRANSLATIONAL MODIFICATIONS MAKE REMARK 1 TITL 3 THE DIFFERENCE. REMARK 1 REF PLOS ONE V. 9 92902 2014 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 24658679 REMARK 1 DOI 10.1371/JOURNAL.PONE.0092902 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1093 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1546 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7699 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.35000 REMARK 3 B22 (A**2) : 2.90000 REMARK 3 B33 (A**2) : -1.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.77000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.514 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7836 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7494 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10564 ; 1.187 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17242 ; 3.597 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 939 ; 5.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 399 ;35.550 ;24.160 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1455 ;16.146 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;13.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1139 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8828 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1788 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3780 ; 3.002 ; 7.818 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3779 ; 3.002 ; 7.818 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4711 ; 4.845 ;11.735 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 72 4 REMARK 3 1 C 10 C 72 4 REMARK 3 1 B 10 B 72 4 REMARK 3 1 D 10 D 72 4 REMARK 3 2 A 85 A 139 4 REMARK 3 2 C 85 C 139 4 REMARK 3 2 B 85 B 139 4 REMARK 3 2 D 85 D 139 4 REMARK 3 3 A 149 A 208 4 REMARK 3 3 C 149 C 208 4 REMARK 3 3 B 149 B 208 4 REMARK 3 3 D 149 D 208 4 REMARK 3 4 A 220 A 234 4 REMARK 3 4 C 220 C 234 4 REMARK 3 4 B 220 B 234 4 REMARK 3 4 D 220 D 234 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3097 ; 0.540 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 3097 ; 0.520 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 3097 ; 0.520 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 3097 ; 0.530 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3097 ; 9.990 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 3097 ; 6.350 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 3097 ; 7.430 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 3097 ;13.870 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ZQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.8, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21585 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.91300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4F7R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 5000 MME 25% W/V, LITHIUM ACETATE REMARK 280 0.2 M, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.70400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE C 5 REMARK 465 PHE B 5 REMARK 465 PHE D 5 REMARK 465 THR D 237 REMARK 465 ASP D 238 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 ALA E 3 REMARK 465 ALA E 8 REMARK 465 ALA F 1 REMARK 465 ARG F 2 REMARK 465 ALA F 3 REMARK 465 ALA F 8 REMARK 465 ALA G 1 REMARK 465 ARG G 2 REMARK 465 ALA G 3 REMARK 465 ALA G 8 REMARK 465 ALA H 1 REMARK 465 ARG H 2 REMARK 465 ALA H 3 REMARK 465 ALA H 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 238 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB PRO A 192 OD2 ASP A 238 2.04 REMARK 500 O TYR B 218 OG1 THR B 222 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU C 210 OH TYR B 218 1554 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 214 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 VAL D 236 CG1 - CB - CG2 ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 213 -148.34 -119.30 REMARK 500 ARG C 22 78.00 -106.58 REMARK 500 LYS C 212 46.34 -84.34 REMARK 500 THR B 118 -52.94 -127.58 REMARK 500 GLU B 215 -70.15 -136.25 REMARK 500 ARG D 22 75.28 -105.57 REMARK 500 ASP D 211 -67.16 -140.37 REMARK 500 LYS D 212 93.89 -67.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALA E 4 and SEP E 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SEP E 5 and ALA E 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALA F 4 and SEP F 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SEP F 5 and ALA F 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALA G 4 and SEP G 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SEP G 5 and ALA G 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALA H 4 and SEP H 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SEP H 5 and ALA H 6 DBREF 4ZQ0 A 5 238 UNP Q2QBT8 Q2QBT8_GIAIN 5 238 DBREF 4ZQ0 C 5 238 UNP Q2QBT8 Q2QBT8_GIAIN 5 238 DBREF 4ZQ0 B 5 238 UNP Q2QBT8 Q2QBT8_GIAIN 5 238 DBREF 4ZQ0 D 5 238 UNP Q2QBT8 Q2QBT8_GIAIN 5 238 DBREF 4ZQ0 E 1 8 PDB 4ZQ0 4ZQ0 1 8 DBREF 4ZQ0 F 1 8 PDB 4ZQ0 4ZQ0 1 8 DBREF 4ZQ0 G 1 8 PDB 4ZQ0 4ZQ0 1 8 DBREF 4ZQ0 H 1 8 PDB 4ZQ0 4ZQ0 1 8 SEQRES 1 A 234 PHE THR ARG GLU ASP TYR VAL PHE MET ALA GLN LEU ASN SEQRES 2 A 234 GLU ASN ALA GLU ARG TYR ASP GLU MET VAL GLU THR MET SEQRES 3 A 234 ARG LYS ILE SER GLY MET GLU GLY GLU LEU SER ASP LYS SEQRES 4 A 234 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL ILE SEQRES 5 A 234 GLY PRO ARG ARG ALA ALA TRP ARG ILE VAL SER SER ILE SEQRES 6 A 234 GLU ALA LYS GLU LYS GLY ARG GLN LYS PRO ASN ALA LYS SEQRES 7 A 234 ARG ILE GLU GLN ILE ARG VAL TYR ARG GLN LYS ILE GLU SEQRES 8 A 234 LYS GLU LEU SER ASP ILE CYS ASN ASP ILE LEU LYS LEU SEQRES 9 A 234 LEU GLN GLU GLN PHE VAL PRO ARG SER THR ASN ALA ASP SEQRES 10 A 234 ALA LYS VAL PHE TYR TYR LYS MET GLN GLY ASP TYR TYR SEQRES 11 A 234 ARG TYR LEU ALA GLU TYR SER SER GLY GLU ASP LYS GLU SEQRES 12 A 234 LYS ILE ALA GLY SER ALA LEU ASN ALA TYR ASN SER ALA SEQRES 13 A 234 PHE GLU ILE SER GLN GLN LEU PRO PRO THR HIS PRO ILE SEQRES 14 A 234 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 A 234 GLU ILE LEU ALA SER PRO ASP ARG ALA CYS GLU LEU ALA SEQRES 16 A 234 ARG LYS ALA PHE ASP ALA ALA ILE THR ASP LEU ASP LYS SEQRES 17 A 234 LEU THR GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 A 234 GLN LEU LEU ARG ASP ASN LEU ASN LEU TRP VAL THR ASP SEQRES 1 C 234 PHE THR ARG GLU ASP TYR VAL PHE MET ALA GLN LEU ASN SEQRES 2 C 234 GLU ASN ALA GLU ARG TYR ASP GLU MET VAL GLU THR MET SEQRES 3 C 234 ARG LYS ILE SER GLY MET GLU GLY GLU LEU SER ASP LYS SEQRES 4 C 234 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL ILE SEQRES 5 C 234 GLY PRO ARG ARG ALA ALA TRP ARG ILE VAL SER SER ILE SEQRES 6 C 234 GLU ALA LYS GLU LYS GLY ARG GLN LYS PRO ASN ALA LYS SEQRES 7 C 234 ARG ILE GLU GLN ILE ARG VAL TYR ARG GLN LYS ILE GLU SEQRES 8 C 234 LYS GLU LEU SER ASP ILE CYS ASN ASP ILE LEU LYS LEU SEQRES 9 C 234 LEU GLN GLU GLN PHE VAL PRO ARG SER THR ASN ALA ASP SEQRES 10 C 234 ALA LYS VAL PHE TYR TYR LYS MET GLN GLY ASP TYR TYR SEQRES 11 C 234 ARG TYR LEU ALA GLU TYR SER SER GLY GLU ASP LYS GLU SEQRES 12 C 234 LYS ILE ALA GLY SER ALA LEU ASN ALA TYR ASN SER ALA SEQRES 13 C 234 PHE GLU ILE SER GLN GLN LEU PRO PRO THR HIS PRO ILE SEQRES 14 C 234 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 C 234 GLU ILE LEU ALA SER PRO ASP ARG ALA CYS GLU LEU ALA SEQRES 16 C 234 ARG LYS ALA PHE ASP ALA ALA ILE THR ASP LEU ASP LYS SEQRES 17 C 234 LEU THR GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 C 234 GLN LEU LEU ARG ASP ASN LEU ASN LEU TRP VAL THR ASP SEQRES 1 B 234 PHE THR ARG GLU ASP TYR VAL PHE MET ALA GLN LEU ASN SEQRES 2 B 234 GLU ASN ALA GLU ARG TYR ASP GLU MET VAL GLU THR MET SEQRES 3 B 234 ARG LYS ILE SER GLY MET GLU GLY GLU LEU SER ASP LYS SEQRES 4 B 234 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL ILE SEQRES 5 B 234 GLY PRO ARG ARG ALA ALA TRP ARG ILE VAL SER SER ILE SEQRES 6 B 234 GLU ALA LYS GLU LYS GLY ARG GLN LYS PRO ASN ALA LYS SEQRES 7 B 234 ARG ILE GLU GLN ILE ARG VAL TYR ARG GLN LYS ILE GLU SEQRES 8 B 234 LYS GLU LEU SER ASP ILE CYS ASN ASP ILE LEU LYS LEU SEQRES 9 B 234 LEU GLN GLU GLN PHE VAL PRO ARG SER THR ASN ALA ASP SEQRES 10 B 234 ALA LYS VAL PHE TYR TYR LYS MET GLN GLY ASP TYR TYR SEQRES 11 B 234 ARG TYR LEU ALA GLU TYR SER SER GLY GLU ASP LYS GLU SEQRES 12 B 234 LYS ILE ALA GLY SER ALA LEU ASN ALA TYR ASN SER ALA SEQRES 13 B 234 PHE GLU ILE SER GLN GLN LEU PRO PRO THR HIS PRO ILE SEQRES 14 B 234 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 B 234 GLU ILE LEU ALA SER PRO ASP ARG ALA CYS GLU LEU ALA SEQRES 16 B 234 ARG LYS ALA PHE ASP ALA ALA ILE THR ASP LEU ASP LYS SEQRES 17 B 234 LEU THR GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 B 234 GLN LEU LEU ARG ASP ASN LEU ASN LEU TRP VAL THR ASP SEQRES 1 D 234 PHE THR ARG GLU ASP TYR VAL PHE MET ALA GLN LEU ASN SEQRES 2 D 234 GLU ASN ALA GLU ARG TYR ASP GLU MET VAL GLU THR MET SEQRES 3 D 234 ARG LYS ILE SER GLY MET GLU GLY GLU LEU SER ASP LYS SEQRES 4 D 234 GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL ILE SEQRES 5 D 234 GLY PRO ARG ARG ALA ALA TRP ARG ILE VAL SER SER ILE SEQRES 6 D 234 GLU ALA LYS GLU LYS GLY ARG GLN LYS PRO ASN ALA LYS SEQRES 7 D 234 ARG ILE GLU GLN ILE ARG VAL TYR ARG GLN LYS ILE GLU SEQRES 8 D 234 LYS GLU LEU SER ASP ILE CYS ASN ASP ILE LEU LYS LEU SEQRES 9 D 234 LEU GLN GLU GLN PHE VAL PRO ARG SER THR ASN ALA ASP SEQRES 10 D 234 ALA LYS VAL PHE TYR TYR LYS MET GLN GLY ASP TYR TYR SEQRES 11 D 234 ARG TYR LEU ALA GLU TYR SER SER GLY GLU ASP LYS GLU SEQRES 12 D 234 LYS ILE ALA GLY SER ALA LEU ASN ALA TYR ASN SER ALA SEQRES 13 D 234 PHE GLU ILE SER GLN GLN LEU PRO PRO THR HIS PRO ILE SEQRES 14 D 234 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 D 234 GLU ILE LEU ALA SER PRO ASP ARG ALA CYS GLU LEU ALA SEQRES 16 D 234 ARG LYS ALA PHE ASP ALA ALA ILE THR ASP LEU ASP LYS SEQRES 17 D 234 LEU THR GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 D 234 GLN LEU LEU ARG ASP ASN LEU ASN LEU TRP VAL THR ASP SEQRES 1 E 8 ALA ARG ALA ALA SEP ALA PRO ALA SEQRES 1 F 8 ALA ARG ALA ALA SEP ALA PRO ALA SEQRES 1 G 8 ALA ARG ALA ALA SEP ALA PRO ALA SEQRES 1 H 8 ALA ARG ALA ALA SEP ALA PRO ALA HET SEP E 5 10 HET SEP F 5 10 HET SEP G 5 10 HET SEP H 5 10 HET PO4 A 301 5 HETNAM SEP PHOSPHOSERINE HETNAM PO4 PHOSPHATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 5 SEP 4(C3 H8 N O6 P) FORMUL 9 PO4 O4 P 3- HELIX 1 AA1 THR A 6 ALA A 20 1 15 HELIX 2 AA2 ARG A 22 GLY A 35 1 14 HELIX 3 AA3 SER A 41 ARG A 76 1 36 HELIX 4 AA4 ASN A 80 GLN A 112 1 33 HELIX 5 AA5 GLN A 112 SER A 117 1 6 HELIX 6 AA6 ASN A 119 GLU A 139 1 21 HELIX 7 AA7 SER A 142 GLN A 165 1 24 HELIX 8 AA8 HIS A 171 ILE A 188 1 18 HELIX 9 AA9 SER A 191 LEU A 210 1 20 HELIX 10 AB1 SER A 217 VAL A 236 1 20 HELIX 11 AB2 ARG C 7 GLU C 21 1 15 HELIX 12 AB3 ARG C 22 MET C 36 1 15 HELIX 13 AB4 SER C 41 GLY C 75 1 35 HELIX 14 AB5 ASN C 80 GLN C 112 1 33 HELIX 15 AB6 GLN C 112 SER C 117 1 6 HELIX 16 AB7 ASN C 119 GLU C 139 1 21 HELIX 17 AB8 GLU C 144 GLN C 165 1 22 HELIX 18 AB9 HIS C 171 ILE C 188 1 18 HELIX 19 AC1 SER C 191 ASP C 209 1 19 HELIX 20 AC2 THR C 214 THR C 237 1 24 HELIX 21 AC3 ARG B 7 GLU B 21 1 15 HELIX 22 AC4 ARG B 22 GLY B 35 1 14 HELIX 23 AC5 SER B 41 GLY B 75 1 35 HELIX 24 AC6 ASN B 80 GLN B 112 1 33 HELIX 25 AC7 GLN B 112 SER B 117 1 6 HELIX 26 AC8 ASN B 119 SER B 141 1 23 HELIX 27 AC9 GLY B 143 GLN B 165 1 23 HELIX 28 AD1 HIS B 171 ILE B 188 1 18 HELIX 29 AD2 SER B 191 ASP B 209 1 19 HELIX 30 AD3 SER B 217 THR B 237 1 21 HELIX 31 AD4 ARG D 7 ALA D 20 1 14 HELIX 32 AD5 ARG D 22 MET D 36 1 15 HELIX 33 AD6 SER D 41 GLY D 75 1 35 HELIX 34 AD7 ASN D 80 GLN D 112 1 33 HELIX 35 AD8 GLN D 112 SER D 117 1 6 HELIX 36 AD9 ASN D 119 GLU D 139 1 21 HELIX 37 AE1 ASP D 145 GLN D 165 1 21 HELIX 38 AE2 HIS D 171 ILE D 188 1 18 HELIX 39 AE3 SER D 191 LEU D 210 1 20 HELIX 40 AE4 THR D 214 TRP D 235 1 22 LINK C ALA E 4 N SEP E 5 1555 1555 1.33 LINK C SEP E 5 N ALA E 6 1555 1555 1.33 LINK C ALA F 4 N SEP F 5 1555 1555 1.33 LINK C SEP F 5 N ALA F 6 1555 1555 1.33 LINK C ALA G 4 N SEP G 5 1555 1555 1.33 LINK C SEP G 5 N ALA G 6 1555 1555 1.33 LINK C ALA H 4 N SEP H 5 1555 1555 1.33 LINK C SEP H 5 N ALA H 6 1555 1555 1.33 SITE 1 AC1 4 ALA A 61 ARG A 64 TYR D 218 THR D 222 SITE 1 AC2 9 LYS A 53 ARG A 60 ARG A 135 TYR A 136 SITE 2 AC2 9 LEU A 179 ASN A 180 LEU A 227 ASN A 231 SITE 3 AC2 9 ALA E 6 SITE 1 AC3 9 LYS A 53 ARG A 60 ARG A 135 TYR A 136 SITE 2 AC3 9 LEU A 179 ASN A 180 LEU A 227 ALA E 4 SITE 3 AC3 9 PRO E 7 SITE 1 AC4 9 LYS B 53 ARG B 60 ARG B 135 TYR B 136 SITE 2 AC4 9 LEU B 179 ASN B 180 VAL B 183 ASN B 231 SITE 3 AC4 9 ALA F 6 SITE 1 AC5 8 LYS B 53 ARG B 60 ARG B 135 TYR B 136 SITE 2 AC5 8 LEU B 179 ASN B 180 ALA F 4 PRO F 7 SITE 1 AC6 9 LYS C 53 ARG C 60 ARG C 135 TYR C 136 SITE 2 AC6 9 LEU C 179 ASN C 180 VAL C 183 ASN C 231 SITE 3 AC6 9 ALA G 6 SITE 1 AC7 8 LYS C 53 ARG C 60 ARG C 135 TYR C 136 SITE 2 AC7 8 LEU C 179 ASN C 180 ALA G 4 PRO G 7 SITE 1 AC8 10 LYS D 53 ARG D 60 ARG D 135 TYR D 136 SITE 2 AC8 10 LEU D 179 ASN D 180 LEU D 227 ASN D 231 SITE 3 AC8 10 ALA H 6 PRO H 7 SITE 1 AC9 9 LYS D 53 ARG D 60 ARG D 135 TYR D 136 SITE 2 AC9 9 LEU D 179 ASN D 180 LEU D 227 ALA H 4 SITE 3 AC9 9 PRO H 7 CRYST1 69.958 109.408 78.568 90.00 92.64 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014294 0.000000 0.000660 0.00000 SCALE2 0.000000 0.009140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012741 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.887526 0.202928 -0.413664 74.55180 1 MTRIX2 2 0.008910 -0.890064 -0.455748 -5.26268 1 MTRIX3 2 -0.460671 -0.408174 0.788147 45.91032 1 MTRIX1 3 0.711351 0.498669 0.495287 1.51842 1 MTRIX2 3 0.494298 -0.855928 0.151842 -13.65746 1 MTRIX3 3 0.499649 0.136806 -0.855357 8.44367 1 MTRIX1 4 -0.849976 -0.524428 -0.050154 75.15653 1 MTRIX2 4 -0.509761 0.794686 0.329573 34.25270 1 MTRIX3 4 -0.132981 0.305695 -0.942797 11.32848 1