PDB Short entry for 5A10 HEADER IMMUNE SYSTEM 27-APR-15 5A10 TITLE THE CRYSTAL STRUCTURE OF TA-TFP, A THIOCYANATE-FORMING PROTEIN TITLE 2 INVOLVED IN GLUCOSINOLATE BREAKDOWN (SPACE GROUP C2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOCYANATE FORMING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THLASPI ARVENSE; SOURCE 3 ORGANISM_TAXID: 13288; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1 KEYWDS IMMUNE SYSTEM, SPECIFIER PROTEIN, KELCH PROTEIN, THLASPI ARVENSE, KEYWDS 2 FIELD- PENNY CRESS, FE(II) DEPENDENT EXPDTA X-RAY DIFFRACTION AUTHOR J.KRAUSZE,F.GUMZ,U.WITTSTOCK REVDAT 4 10-JAN-24 5A10 1 REMARK LINK REVDAT 3 30-SEP-15 5A10 1 JRNL REVDAT 2 02-SEP-15 5A10 1 REMARK REVDAT 1 26-AUG-15 5A10 0 JRNL AUTH F.GUMZ,J.KRAUSZE,D.EISENSCHMIDT,A.BACKENKOHLER,L.BARLEBEN, JRNL AUTH 2 W.BRANDT,U.WITTSTOCK JRNL TITL THE CRYSTAL STRUCTURE OF THE THIOCYANATE-FORMING PROTEIN JRNL TITL 2 FROM THLASPI ARVENSE, A KELCH PROTEIN INVOLVED IN JRNL TITL 3 GLUCOSINOLATE BREAKDOWN. JRNL REF PLANT MOL.BIOL. V. 89 67 2015 JRNL REFN ISSN 0167-4412 JRNL PMID 26260516 JRNL DOI 10.1007/S11103-015-0351-9 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 68089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8768 - 4.0932 1.00 2862 151 0.1216 0.1563 REMARK 3 2 4.0932 - 3.2535 1.00 2787 147 0.1364 0.1357 REMARK 3 3 3.2535 - 2.8436 1.00 2793 147 0.1538 0.1585 REMARK 3 4 2.8436 - 2.5842 1.00 2765 145 0.1540 0.1708 REMARK 3 5 2.5842 - 2.3993 0.99 2775 146 0.1567 0.1605 REMARK 3 6 2.3993 - 2.2580 1.00 2764 146 0.1541 0.1737 REMARK 3 7 2.2580 - 2.1451 0.99 2716 143 0.1571 0.1722 REMARK 3 8 2.1451 - 2.0518 0.99 2732 144 0.1610 0.1904 REMARK 3 9 2.0518 - 1.9729 0.99 2735 144 0.1608 0.1854 REMARK 3 10 1.9729 - 1.9049 0.99 2709 142 0.1578 0.1862 REMARK 3 11 1.9049 - 1.8454 0.98 2720 143 0.1686 0.1746 REMARK 3 12 1.8454 - 1.7926 0.98 2675 141 0.1725 0.1971 REMARK 3 13 1.7926 - 1.7455 0.99 2720 143 0.1710 0.2064 REMARK 3 14 1.7455 - 1.7029 0.98 2690 142 0.1742 0.1704 REMARK 3 15 1.7029 - 1.6642 0.98 2714 143 0.1748 0.2297 REMARK 3 16 1.6642 - 1.6288 0.98 2682 141 0.1773 0.2119 REMARK 3 17 1.6288 - 1.5963 0.97 2700 142 0.1876 0.2008 REMARK 3 18 1.5963 - 1.5661 0.98 2666 140 0.1823 0.2249 REMARK 3 19 1.5661 - 1.5382 0.97 2697 142 0.1978 0.2223 REMARK 3 20 1.5382 - 1.5121 0.97 2665 140 0.2111 0.2439 REMARK 3 21 1.5121 - 1.4877 0.97 2646 140 0.2157 0.2494 REMARK 3 22 1.4877 - 1.4649 0.97 2660 140 0.2338 0.2672 REMARK 3 23 1.4649 - 1.4433 0.94 2568 135 0.2487 0.2282 REMARK 3 24 1.4433 - 1.4230 0.82 2243 118 0.2580 0.2779 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2875 REMARK 3 ANGLE : 1.218 3908 REMARK 3 CHIRALITY : 0.076 404 REMARK 3 PLANARITY : 0.006 515 REMARK 3 DIHEDRAL : 13.093 1036 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.7919 30.0598 -18.9561 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.3440 REMARK 3 T33: 0.1303 T12: 0.0856 REMARK 3 T13: 0.0448 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.6969 L22: 0.6362 REMARK 3 L33: 0.6666 L12: 0.4353 REMARK 3 L13: 0.4930 L23: 0.4889 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: 0.3672 S13: 0.1344 REMARK 3 S21: -0.1173 S22: 0.0734 S23: -0.1494 REMARK 3 S31: 0.1210 S32: 0.4989 S33: 0.0192 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0226 37.8517 -18.5091 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.1382 REMARK 3 T33: 0.1989 T12: 0.0025 REMARK 3 T13: 0.0242 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.7427 L22: 1.0132 REMARK 3 L33: 0.9859 L12: 0.0351 REMARK 3 L13: 1.3551 L23: -0.1415 REMARK 3 S TENSOR REMARK 3 S11: -0.1343 S12: 0.0668 S13: 0.3892 REMARK 3 S21: -0.0563 S22: -0.0864 S23: 0.1044 REMARK 3 S31: -0.0178 S32: 0.0525 S33: 0.1862 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9450 29.2044 -15.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.1224 T22: 0.1636 REMARK 3 T33: 0.1608 T12: -0.0163 REMARK 3 T13: 0.0368 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.9139 L22: 1.4507 REMARK 3 L33: 1.5559 L12: 0.3003 REMARK 3 L13: 0.6260 L23: -0.1234 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: -0.1685 S13: 0.1747 REMARK 3 S21: 0.0266 S22: -0.0840 S23: 0.1900 REMARK 3 S31: 0.1339 S32: -0.2365 S33: 0.0142 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2600 16.7823 -11.4076 REMARK 3 T TENSOR REMARK 3 T11: 0.2710 T22: 0.1505 REMARK 3 T33: 0.1978 T12: -0.0797 REMARK 3 T13: -0.0658 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 2.0129 L22: 0.6441 REMARK 3 L33: 0.7817 L12: 0.2628 REMARK 3 L13: 0.9137 L23: -0.2238 REMARK 3 S TENSOR REMARK 3 S11: 0.4652 S12: -0.2230 S13: -0.4371 REMARK 3 S21: 0.1842 S22: -0.1052 S23: 0.0125 REMARK 3 S31: 0.4312 S32: -0.2180 S33: -0.1115 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.0466 18.7822 -6.9089 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.0663 REMARK 3 T33: 0.1723 T12: 0.0135 REMARK 3 T13: -0.0731 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 2.7556 L22: 0.7566 REMARK 3 L33: 2.2348 L12: 0.1256 REMARK 3 L13: 1.8497 L23: -0.1193 REMARK 3 S TENSOR REMARK 3 S11: 0.5391 S12: 0.0258 S13: -0.4700 REMARK 3 S21: 0.0025 S22: -0.1005 S23: -0.0023 REMARK 3 S31: 0.5798 S32: 0.0460 S33: -0.1164 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.0993 30.6343 -18.0879 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.2248 REMARK 3 T33: 0.1278 T12: 0.0608 REMARK 3 T13: 0.0262 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.8647 L22: 1.2405 REMARK 3 L33: 1.3582 L12: -0.2359 REMARK 3 L13: 0.4779 L23: -0.2606 REMARK 3 S TENSOR REMARK 3 S11: 0.1279 S12: 0.4621 S13: 0.0291 REMARK 3 S21: -0.2310 S22: -0.1497 S23: 0.0049 REMARK 3 S31: 0.0734 S32: 0.3256 S33: -0.0163 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) AND SI(113) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68089 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VPJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.6, 20% (W/V) REMARK 280 PEG 4000, 0.1 M AMMONIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.69500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.48000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.69500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.48000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 119.39000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2139 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 170 CD CE NZ REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 LYS A 209 CD CE NZ REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2035 O HOH A 2106 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 126.12 172.27 REMARK 500 PRO A 43 -176.92 -64.45 REMARK 500 ILE A 48 -60.44 -123.63 REMARK 500 ASP A 102 -167.09 -79.24 REMARK 500 ASP A 136 -158.59 -137.80 REMARK 500 TYR A 200 -154.69 59.58 REMARK 500 ASN A 206 50.23 -118.90 REMARK 500 ASP A 207 108.08 -165.54 REMARK 500 CYS A 250 57.12 39.87 REMARK 500 ALA A 273 -106.40 63.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1350 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 33 OD2 REMARK 620 2 HOH A2063 O 110.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1349 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1350 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A11 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF TA-TFP, A THIOCYANATE-FORMING PROTEIN REMARK 900 INVOLVED IN GLUCOSINOLATE BREAKDOWN (SPACE GROUP P21) DBREF 5A10 A 1 348 UNP G1FNI6 G1FNI6_THLAR 1 348 SEQADV 5A10 GLY A -7 UNP G1FNI6 EXPRESSION TAG SEQADV 5A10 PRO A -6 UNP G1FNI6 EXPRESSION TAG SEQADV 5A10 LEU A -5 UNP G1FNI6 EXPRESSION TAG SEQADV 5A10 GLY A -4 UNP G1FNI6 EXPRESSION TAG SEQADV 5A10 SER A -3 UNP G1FNI6 EXPRESSION TAG SEQADV 5A10 PRO A -2 UNP G1FNI6 EXPRESSION TAG SEQADV 5A10 GLU A -1 UNP G1FNI6 EXPRESSION TAG SEQADV 5A10 PHE A 0 UNP G1FNI6 EXPRESSION TAG SEQRES 1 A 356 GLY PRO LEU GLY SER PRO GLU PHE MET ALA ARG THR LEU SEQRES 2 A 356 GLN GLY GLU TRP MET LYS VAL GLU GLN LYS GLY GLY GLN SEQRES 3 A 356 VAL PRO ALA PRO ARG SER SER HIS GLY ILE ALA VAL ILE SEQRES 4 A 356 GLY ASP LYS LEU TYR CYS PHE GLY GLY GLU ASP PRO PRO SEQRES 5 A 356 TYR GLU SER ILE ASP ASN ASP LEU TYR VAL PHE ASP PHE SEQRES 6 A 356 ASN THR HIS THR TRP SER ILE ALA PRO ALA ASN GLY ASP SEQRES 7 A 356 VAL PRO LYS THR ARG VAL LEU GLY THR ARG MET VAL ALA SEQRES 8 A 356 VAL GLY THR LYS LEU TYR VAL PHE GLY GLY ARG ASN LYS SEQRES 9 A 356 GLN LEU GLU PHE GLU ASP PHE TYR SER TYR ASP THR VAL SEQRES 10 A 356 LYS GLU GLU TRP LYS PHE LEU THR LYS LEU ASP GLU LYS SEQRES 11 A 356 GLY GLY PRO GLU ALA ARG THR PHE HIS SER MET THR SER SEQRES 12 A 356 ASP GLU ASN HIS VAL TYR VAL PHE GLY GLY VAL SER LYS SEQRES 13 A 356 GLY GLY LEU ASN ALA THR PRO PHE ARG PHE ARG THR ILE SEQRES 14 A 356 GLU ALA TYR ASN ILE ALA GLU GLY LYS TRP ALA GLN LEU SEQRES 15 A 356 PRO ASP PRO GLY GLU ASP PHE GLU LYS ARG GLY MET ALA SEQRES 16 A 356 GLY PHE LEU VAL VAL GLN GLY LYS LEU TRP VAL PHE TYR SEQRES 17 A 356 GLY PHE ALA THR ALA ASN ASP PRO LYS ILE PRO THR LEU SEQRES 18 A 356 TYR GLY SER GLN ASP TYR GLU SER ASN ARG VAL HIS CYS SEQRES 19 A 356 TYR ASP PRO ALA THR GLN LYS TRP THR GLU VAL GLU THR SEQRES 20 A 356 THR GLY PHE GLU LYS PRO SER ARG ARG SER CYS PHE ALA SEQRES 21 A 356 HIS ALA ALA VAL GLY LYS TYR ILE ILE ILE PHE GLY GLY SEQRES 22 A 356 GLU ILE GLU ARG ASP PRO GLU ALA HIS GLN GLY PRO GLY SEQRES 23 A 356 THR LEU SER ARG GLU GLY PHE ALA LEU ASP THR GLU THR SEQRES 24 A 356 LEU VAL TRP GLU ARG TYR GLU GLY GLY PRO ILE LYS PRO SEQRES 25 A 356 SER ASN ARG GLY TRP VAL ALA SER THR THR THR THR ILE SEQRES 26 A 356 ASN GLY LYS LYS GLY LEU LEU VAL HIS GLY GLY LYS LEU SEQRES 27 A 356 MET THR ASN GLU ARG THR ASP GLU MET TYR PHE PHE ALA SEQRES 28 A 356 VAL ASN SER SER THR HET ACT A1349 4 HET NA A1350 1 HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 NA NA 1+ FORMUL 4 HOH *361(H2 O) SHEET 1 AA 4 GLY A 7 LYS A 11 0 SHEET 2 AA 4 MET A 339 VAL A 344 -1 O PHE A 341 N MET A 10 SHEET 3 AA 4 LYS A 320 HIS A 326 -1 O LYS A 321 N VAL A 344 SHEET 4 AA 4 ALA A 311 ILE A 317 -1 O ALA A 311 N HIS A 326 SHEET 1 AB 5 GLY A 16 GLY A 17 0 SHEET 2 AB 5 THR A 61 ILE A 64 1 N TRP A 62 O GLY A 16 SHEET 3 AB 5 TYR A 53 ASP A 56 -1 O VAL A 54 N SER A 63 SHEET 4 AB 5 LYS A 34 PHE A 38 -1 O LEU A 35 N PHE A 55 SHEET 5 AB 5 GLY A 27 ILE A 31 -1 O GLY A 27 N PHE A 38 SHEET 1 AC 4 ARG A 80 VAL A 84 0 SHEET 2 AC 4 LYS A 87 PHE A 91 -1 O LYS A 87 N VAL A 84 SHEET 3 AC 4 PHE A 103 ASP A 107 -1 O TYR A 104 N VAL A 90 SHEET 4 AC 4 GLU A 112 THR A 117 -1 O GLU A 112 N ASP A 107 SHEET 1 AD 2 ARG A 128 THR A 129 0 SHEET 2 AD 2 VAL A 146 SER A 147 -1 O VAL A 146 N THR A 129 SHEET 1 AE 4 SER A 132 SER A 135 0 SHEET 2 AE 4 HIS A 139 PHE A 143 -1 O TYR A 141 N THR A 134 SHEET 3 AE 4 ILE A 161 ASN A 165 -1 O GLU A 162 N VAL A 142 SHEET 4 AE 4 LYS A 170 GLN A 173 -1 O LYS A 170 N ASN A 165 SHEET 1 AF 2 ARG A 184 GLY A 185 0 SHEET 2 AF 2 LYS A 195 ALA A 203 1 O PHE A 202 N GLY A 185 SHEET 1 AG 2 GLY A 188 VAL A 192 0 SHEET 2 AG 2 LYS A 195 ALA A 203 -1 O LYS A 195 N VAL A 192 SHEET 1 AH 4 TRP A 234 GLU A 236 0 SHEET 2 AH 4 TYR A 219 TYR A 227 -1 O CYS A 226 N THR A 235 SHEET 3 AH 4 LYS A 195 ALA A 203 -1 O LEU A 196 N TYR A 227 SHEET 4 AH 4 GLY A 188 VAL A 192 -1 O GLY A 188 N PHE A 199 SHEET 1 AI 4 TRP A 234 GLU A 236 0 SHEET 2 AI 4 TYR A 219 TYR A 227 -1 O CYS A 226 N THR A 235 SHEET 3 AI 4 LYS A 195 ALA A 203 -1 O LEU A 196 N TYR A 227 SHEET 4 AI 4 ARG A 184 GLY A 185 1 O GLY A 185 N PHE A 202 SHEET 1 AJ 4 ALA A 252 VAL A 256 0 SHEET 2 AJ 4 TYR A 259 PHE A 263 -1 O TYR A 259 N VAL A 256 SHEET 3 AJ 4 GLY A 284 ASP A 288 -1 O PHE A 285 N ILE A 262 SHEET 4 AJ 4 TRP A 294 TYR A 297 -1 O GLU A 295 N ALA A 286 SHEET 1 AK 2 GLU A 266 GLU A 268 0 SHEET 2 AK 2 THR A 279 LEU A 280 -1 O THR A 279 N ILE A 267 SHEET 1 AL 2 ARG A 307 GLY A 308 0 SHEET 2 AL 2 LYS A 329 LEU A 330 -1 O LYS A 329 N GLY A 308 LINK OD2 ASP A 33 NA NA A1350 1555 1555 2.42 LINK NA NA A1350 O HOH A2063 1555 1555 2.93 CISPEP 1 ASP A 42 PRO A 43 0 -8.45 SITE 1 AC1 5 ARG A 157 GLY A 185 PHE A 202 HOH A2318 SITE 2 AC1 5 HOH A2320 SITE 1 AC2 2 ASP A 33 HOH A2063 CRYST1 119.390 48.960 68.270 90.00 109.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008376 0.000000 0.003001 0.00000 SCALE2 0.000000 0.020425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015559 0.00000