PDB Short entry for 5A61 HEADER HYDROLASE 23-JUN-15 5A61 TITLE CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN COMPLEX TITLE 2 WITH TRIPOLYPHOSPHATE AND TWO MANGANESE IONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC TRIPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.1.25; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS HYDROLASE, TRIPOLYPHOSPHATE, TRIPHOSPHATE TUNNEL METALLOENZYME EXPDTA X-RAY DIFFRACTION AUTHOR J.MARTINEZ,V.TRUFFAULT,M.HOTHORN REVDAT 3 07-OCT-15 5A61 1 JRNL REVDAT 2 12-AUG-15 5A61 1 JRNL REVDAT 1 05-AUG-15 5A61 0 JRNL AUTH J.MARTINEZ,V.TRUFFAULT,M.HOTHORN JRNL TITL STRUCTURAL DETERMINANTS FOR SUBSTRATE BINDING AND CATALYSIS JRNL TITL 2 IN TRIPHOSPHATE TUNNEL METALLOENZYMES. JRNL REF J.BIOL.CHEM. V. 290 23348 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26221030 JRNL DOI 10.1074/JBC.M115.674473 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 100.00 REMARK 3 NUMBER OF REFLECTIONS : 86573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.15242 REMARK 3 R VALUE (WORKING SET) : 0.15145 REMARK 3 FREE R VALUE : 0.17087 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 4513 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.500 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.539 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6408 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.256 REMARK 3 BIN FREE R VALUE SET COUNT : 336 REMARK 3 BIN FREE R VALUE : 0.267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.368 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38 REMARK 3 B22 (A**2) : 0.38 REMARK 3 B33 (A**2) : -1.24 REMARK 3 B12 (A**2) : 0.19 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3492 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3329 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4747 ; 1.186 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7628 ; 0.870 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 5.384 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;33.730 ;24.024 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 578 ;11.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.377 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3980 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 818 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1722 ; 2.384 ; 4.585 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1721 ; 2.382 ; 4.584 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2153 ; 3.123 ; 6.887 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1770 ; 3.077 ; 5.079 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6821 ; 0.814 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 82 ;26.526 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6963 ;14.418 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7039 47.4943 75.2908 REMARK 3 T TENSOR REMARK 3 T11: 0.0257 T22: 0.0167 REMARK 3 T33: 0.0439 T12: -0.0031 REMARK 3 T13: -0.0010 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.4059 L22: 0.7109 REMARK 3 L33: 1.2972 L12: -0.0110 REMARK 3 L13: 0.4254 L23: 0.7660 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.0125 S13: 0.0045 REMARK 3 S21: 0.0178 S22: -0.0240 S23: 0.0164 REMARK 3 S31: 0.0139 S32: -0.0413 S33: 0.0286 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4531 57.3210 64.9362 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.0638 REMARK 3 T33: 0.1057 T12: -0.0190 REMARK 3 T13: -0.0093 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.3788 L22: 0.4875 REMARK 3 L33: 0.4192 L12: 0.4133 REMARK 3 L13: 0.3763 L23: 0.4499 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: 0.1254 S13: 0.0067 REMARK 3 S21: -0.0401 S22: 0.1263 S23: -0.0126 REMARK 3 S31: -0.0320 S32: 0.1166 S33: -0.0373 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0166 60.9577 70.5019 REMARK 3 T TENSOR REMARK 3 T11: 0.0116 T22: 0.0252 REMARK 3 T33: 0.1092 T12: 0.0024 REMARK 3 T13: -0.0070 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.2196 L22: 0.1407 REMARK 3 L33: 0.1749 L12: -0.0419 REMARK 3 L13: 0.0290 L23: 0.0322 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.0165 S13: 0.0940 REMARK 3 S21: 0.0069 S22: 0.0424 S23: -0.0982 REMARK 3 S31: -0.0065 S32: 0.0292 S33: -0.0161 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6380 52.8226 72.0894 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0327 REMARK 3 T33: 0.0571 T12: 0.0076 REMARK 3 T13: 0.0005 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2445 L22: 0.0411 REMARK 3 L33: 0.0321 L12: -0.0558 REMARK 3 L13: -0.0709 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0084 S13: 0.0531 REMARK 3 S21: 0.0185 S22: 0.0238 S23: -0.0149 REMARK 3 S31: 0.0132 S32: -0.0014 S33: -0.0248 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1934 32.9854 77.8843 REMARK 3 T TENSOR REMARK 3 T11: 0.0216 T22: 0.0236 REMARK 3 T33: 0.0457 T12: 0.0009 REMARK 3 T13: -0.0010 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0575 L22: 0.0183 REMARK 3 L33: 0.0679 L12: -0.0237 REMARK 3 L13: 0.0212 L23: -0.0306 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.0018 S13: -0.0015 REMARK 3 S21: -0.0007 S22: -0.0002 S23: -0.0002 REMARK 3 S31: 0.0033 S32: -0.0060 S33: -0.0029 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 338 A 428 REMARK 3 ORIGIN FOR THE GROUP (A): 50.6153 16.6656 74.2899 REMARK 3 T TENSOR REMARK 3 T11: 0.0288 T22: 0.0182 REMARK 3 T33: 0.0447 T12: 0.0037 REMARK 3 T13: 0.0010 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0178 L22: 0.1261 REMARK 3 L33: 0.1921 L12: 0.0137 REMARK 3 L13: 0.0232 L23: 0.0557 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.0032 S13: 0.0012 REMARK 3 S21: -0.0084 S22: -0.0013 S23: -0.0046 REMARK 3 S31: 0.0280 S32: 0.0130 S33: -0.0018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES WITH TLS ADDED REMARK 3 THE SECOND DATA SET CONTAINS ANOMALOUS DATA COLLECTED REMARK 3 CLOSE TO THE MN K EDGE, AT 1.7 A. THE DATA SET CAN BE USED REMARK 3 TO CONFIRM THE POSITIONS OF THE TWO METAL COFACTORS. REMARK 4 REMARK 4 5A61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-15 REMARK 100 THE PDBE ID CODE IS EBI-64161 REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999990, 1.700020 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91340 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.50 REMARK 200 RESOLUTION RANGE LOW (A) : 48.77 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 15.48 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.35 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 14.18 REMARK 200 R MERGE FOR SHELL (I) : 1.34 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.03 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3,350, 0.2 M NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.55267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.77633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.66450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.88817 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 104.44083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 429 REMARK 465 SER A 430 REMARK 465 GLY A 431 REMARK 465 LYS A 432 REMARK 465 ARG A 433 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 181 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 134 -124.35 54.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 6 OE2 REMARK 620 2 GLU A 160 OE1 90.7 REMARK 620 3 GLU A 160 OE2 92.4 57.6 REMARK 620 4 3PO A 500 O1B 173.9 93.6 86.3 REMARK 620 5 3PO A 500 O5' 96.9 99.6 155.6 86.7 REMARK 620 6 3PO A 500 O1G 87.1 160.0 102.6 87.3 100.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3PO A 500 O5' REMARK 620 2 GLU A 6 OE1 99.6 REMARK 620 3 HOH A2008 O 89.4 84.8 REMARK 620 4 GLU A 162 OE1 165.6 91.2 82.1 REMARK 620 5 HOH A2003 O 89.5 169.1 89.5 78.9 REMARK 620 6 GLU A 4 OE2 97.0 90.7 172.7 92.3 94.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PO A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A5Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH REMARK 900 TRIPOLYPHOSPHATE AND MAGNESIUM ION (FORM A) REMARK 900 RELATED ID: 5A60 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH E. COLI YGIF IN REMARK 900 COMPLEX WITH TRIPOLYPHOSPHATE AND TWO MAGNESIUM IONS REMARK 900 RELATED ID: 5A64 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN REMARK 900 COMPLEX WITH THIAMINE TRIPHOSPHATE. REMARK 900 RELATED ID: 5A65 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE THIAMINE TRIPHOSPHATASE IN REMARK 900 COMPLEX WITH THIAMINE DIPHOSPHATE, ORTHOPHOSPHATE AND REMARK 900 MAGNESIUM IONS. REMARK 900 RELATED ID: 5A66 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH REMARK 900 TRIPOLYPHOSPHATE AND MANGANESE ION (FORM A) REMARK 900 RELATED ID: 5A67 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ATTTM3 IN COMPLEX WITH REMARK 900 TRIPOLYPHOSPHATE AND MANGANESE ION (FORM B) REMARK 900 RELATED ID: 5A68 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ATTTM3 PRODUCT COMPLEX WITH REMARK 900 TWO ORTHOPHOSPHATES AND MANGANESE IONS (FORM B) DBREF 5A61 A 1 433 UNP V8FJJ2 V8FJJ2_ECOLX 1 433 SEQADV 5A61 GLY A -1 UNP V8FJJ2 EXPRESSION TAG SEQADV 5A61 ALA A 0 UNP V8FJJ2 EXPRESSION TAG SEQRES 1 A 435 GLY ALA MET ALA GLN GLU ILE GLU LEU LYS PHE ILE VAL SEQRES 2 A 435 ASN HIS SER ALA VAL GLU ALA LEU ARG ASP HIS LEU ASN SEQRES 3 A 435 THR LEU GLY GLY GLU HIS HIS ASP PRO VAL GLN LEU LEU SEQRES 4 A 435 ASN ILE TYR TYR GLU THR PRO ASP ASN TRP LEU ARG GLY SEQRES 5 A 435 HIS ASP MET GLY LEU ARG ILE ARG GLY GLU ASN GLY ARG SEQRES 6 A 435 TYR GLU MET THR MET LYS VAL ALA GLY ARG VAL THR GLY SEQRES 7 A 435 GLY LEU HIS GLN ARG PRO GLU TYR ASN VAL ALA LEU SER SEQRES 8 A 435 GLU PRO THR LEU ASP LEU ALA GLN LEU PRO THR GLU VAL SEQRES 9 A 435 TRP PRO ASN GLY GLU LEU PRO ALA ASP LEU ALA SER ARG SEQRES 10 A 435 VAL GLN PRO LEU PHE SER THR ASP PHE TYR ARG GLU LYS SEQRES 11 A 435 TRP LEU VAL ALA VAL ASP ASP SER ARG ILE GLU ILE ALA SEQRES 12 A 435 LEU ASP GLN GLY GLU VAL LYS ALA GLY GLU PHE ALA GLU SEQRES 13 A 435 PRO ILE CYS GLU LEU GLU LEU GLU LEU LEU SER GLY ASP SEQRES 14 A 435 THR ARG ALA VAL LEU LYS LEU ALA ASN GLN LEU VAL SER SEQRES 15 A 435 GLN THR GLY LEU ARG GLN GLY SER LEU SER LYS ALA ALA SEQRES 16 A 435 ARG GLY TYR HIS LEU ALA GLN GLY ASN PRO ALA ARG GLU SEQRES 17 A 435 ILE LYS PRO THR THR ILE LEU HIS VAL ALA ALA LYS ALA SEQRES 18 A 435 ASP VAL GLU GLN GLY LEU GLU ALA ALA PHE GLU LEU ALA SEQRES 19 A 435 LEU ALA GLN TRP GLN TYR HIS GLU GLU LEU TRP VAL ARG SEQRES 20 A 435 GLY ASN ASP ALA ALA LYS GLU GLN VAL LEU ALA ALA ILE SEQRES 21 A 435 GLY LEU VAL ARG HIS ALA LEU MET LEU PHE GLY GLY ILE SEQRES 22 A 435 VAL PRO ARG LYS ALA SER THR HIS LEU ARG ASP LEU LEU SEQRES 23 A 435 THR GLN CYS GLU ALA THR ILE ALA SER ALA VAL SER ALA SEQRES 24 A 435 VAL THR ALA VAL TYR SER THR GLU THR ALA MET ALA LYS SEQRES 25 A 435 LEU ALA LEU THR GLU TRP LEU VAL SER LYS ALA TRP GLN SEQRES 26 A 435 PRO PHE LEU ASP ALA LYS ALA GLN GLY LYS ILE SER ASP SEQRES 27 A 435 SER PHE LYS ARG PHE ALA ASP ILE HIS LEU SER ARG HIS SEQRES 28 A 435 ALA ALA GLU LEU LYS SER VAL PHE CYS GLN PRO LEU GLY SEQRES 29 A 435 ASP ARG TYR HIS ASP GLN LEU PRO ARG LEU THR ARG ASP SEQRES 30 A 435 ILE ASP SER ILE LEU LEU LEU ALA GLY TYR TYR ASP PRO SEQRES 31 A 435 VAL VAL ALA GLN ALA TRP LEU GLU ASN TRP GLN GLY LEU SEQRES 32 A 435 ARG HIS ALA ILE ALA THR GLY GLN ARG ILE GLU ILE GLU SEQRES 33 A 435 HIS PHE ARG ASN GLU ALA ASN ASN GLN GLU PRO PHE TRP SEQRES 34 A 435 LEU HIS SER GLY LYS ARG HET EDO A1000 4 HET EDO A1001 4 HET EDO A1002 4 HET MN A 501 1 HET MN A 502 1 HET 3PO A 500 13 HETNAM EDO 1,2-ETHANEDIOL HETNAM MN MANGANESE (II) ION HETNAM 3PO TRIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 3 MN 2(MN 2+) FORMUL 4 3PO H5 O10 P3 HELIX 1 1 ALA A 15 ASN A 24 1 10 HELIX 2 2 ASN A 46 HIS A 51 1 6 HELIX 3 3 ASP A 94 LEU A 98 5 5 HELIX 4 4 PRO A 99 TRP A 103 5 5 HELIX 5 5 ASP A 111 VAL A 116 1 6 HELIX 6 6 ASP A 167 VAL A 179 1 13 HELIX 7 7 SER A 190 GLN A 200 1 11 HELIX 8 8 ASP A 220 ARG A 245 1 26 HELIX 9 9 ALA A 249 PHE A 268 1 20 HELIX 10 10 PRO A 273 ALA A 276 5 4 HELIX 11 11 SER A 277 ALA A 294 1 18 HELIX 12 12 SER A 296 SER A 303 1 8 HELIX 13 13 SER A 303 SER A 319 1 17 HELIX 14 14 TRP A 322 LEU A 326 5 5 HELIX 15 15 ASP A 327 SER A 335 1 9 HELIX 16 16 SER A 337 CYS A 358 1 22 HELIX 17 17 TYR A 365 ASP A 367 5 3 HELIX 18 18 GLN A 368 ALA A 383 1 16 HELIX 19 19 ASP A 387 GLY A 408 1 22 HELIX 20 20 GLN A 409 GLN A 423 1 15 SHEET 1 AA 2 ARG A 73 THR A 75 0 SHEET 2 AA 2 LEU A 78 LEU A 88 -1 O LEU A 78 N THR A 75 SHEET 1 AB 2 LEU A 184 GLN A 186 0 SHEET 2 AB 2 ALA A 2 VAL A 11 -1 O ILE A 10 N ARG A 185 LINK MN MN A 501 OE2 GLU A 6 1555 1555 2.13 LINK MN MN A 501 OE1 GLU A 160 1555 1555 2.24 LINK MN MN A 501 OE2 GLU A 160 1555 1555 2.28 LINK MN MN A 501 O1B 3PO A 500 1555 1555 2.19 LINK MN MN A 501 O5' 3PO A 500 1555 1555 2.15 LINK MN MN A 501 O1G 3PO A 500 1555 1555 2.09 LINK MN MN A 502 OE1 GLU A 6 1555 1555 2.05 LINK MN MN A 502 O HOH A2008 1555 1555 2.34 LINK MN MN A 502 OE1 GLU A 162 1555 1555 2.31 LINK MN MN A 502 O HOH A2003 1555 1555 2.19 LINK MN MN A 502 OE2 GLU A 4 1555 1555 2.23 LINK MN MN A 502 O5' 3PO A 500 1555 1555 2.26 SITE 1 AC1 5 GLU A 252 ARG A 402 HIS A 403 ALA A 406 SITE 2 AC1 5 HOH A2224 SITE 1 AC2 6 GLU A 17 ARG A 348 HIS A 349 ARG A 371 SITE 2 AC2 6 ARG A 374 HOH A2240 SITE 1 AC3 7 ARG A 20 TYR A 125 GLU A 127 LEU A 142 SITE 2 AC3 7 GLN A 144 ALA A 351 HOH A2019 SITE 1 AC4 4 GLU A 6 GLU A 160 3PO A 500 MN A 502 SITE 1 AC5 7 GLU A 4 GLU A 6 GLU A 162 3PO A 500 SITE 2 AC5 7 MN A 501 HOH A2003 HOH A2008 SITE 1 AC6 17 GLU A 4 GLU A 6 LYS A 8 ARG A 56 SITE 2 AC6 17 ARG A 58 LYS A 69 ARG A 81 PHE A 124 SITE 3 AC6 17 ARG A 126 GLU A 160 SER A 190 LYS A 191 SITE 4 AC6 17 MN A 501 MN A 502 HOH A2004 HOH A2031 SITE 5 AC6 17 HOH A2032 CRYST1 89.676 89.676 125.329 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011151 0.006438 0.000000 0.00000 SCALE2 0.000000 0.012876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007979 0.00000