PDB Short entry for 5A7R HEADER HYDROLASE 09-JUL-15 5A7R TITLE HUMAN POLY(ADP-RIBOSE) GLYCOHYDROLASE IN COMPLEX WITH SYNTHETIC TITLE 2 DIMERIC ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ADP-RIBOSE) GLYCOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.143; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE, PARG, ADP-RIBOSE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.LAMBRECHT,M.BRICHACEK,E.BARKAUSKAITE,A.ARIZA,I.AHEL, AUTHOR 2 P.J.HERGENROTHER REVDAT 2 10-JAN-24 5A7R 1 REMARK HETSYN LINK REVDAT 1 22-JUL-15 5A7R 0 JRNL AUTH M.J.LAMBRECHT,M.BRICHACEK,E.BARKAUSKAITE,A.ARIZA,I.AHEL, JRNL AUTH 2 P.J.HERGENROTHER JRNL TITL SYNTHESIS OF DIMERIC ADP-RIBOSE AND ITS STRUCTURE WITH HUMAN JRNL TITL 2 POLY(ADP-RIBOSE) GLYCOHYDROLASE. JRNL REF J.AM.CHEM.SOC. V. 137 3558 2015 JRNL REFN ISSN 0002-7863 JRNL PMID 25706250 JRNL DOI 10.1021/JA512528P REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4097 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 197 REMARK 3 SOLVENT ATOMS : 422 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.49000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 1.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.749 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4508 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4236 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6123 ; 1.547 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9765 ; 1.053 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 541 ; 6.674 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;36.762 ;23.019 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 762 ;13.914 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.860 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4951 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1063 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2062 ; 2.001 ; 1.885 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2061 ; 1.991 ; 1.884 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2585 ; 2.944 ; 2.812 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2446 ; 3.355 ; 2.354 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3521 ; 5.029 ; 3.365 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WERE REFINED INDIVIDUALLY REMARK 4 REMARK 4 5A7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : SINGLE BOUNCE MONOCHROMATOR REMARK 200 OPTICS : TORROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44881 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 55.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4A0D REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M AMMONIUM SULFATE, REMARK 280 0.1 M PCTP PH 7.5, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.72850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.06150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.63850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.06150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.72850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.63850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 446 REMARK 465 SER A 447 REMARK 465 SER A 448 REMARK 465 PRO A 449 REMARK 465 GLU A 524 REMARK 465 ASP A 525 REMARK 465 GLU A 526 REMARK 465 ASN A 527 REMARK 465 GLY A 528 REMARK 465 GLU A 529 REMARK 465 ARG A 530 REMARK 465 THR A 531 REMARK 465 ALA A 964 REMARK 465 GLU A 965 REMARK 465 THR A 966 REMARK 465 ALA A 967 REMARK 465 ASP A 968 REMARK 465 HIS A 969 REMARK 465 SER A 970 REMARK 465 GLY A 971 REMARK 465 GLN A 972 REMARK 465 ARG A 973 REMARK 465 THR A 974 REMARK 465 GLY A 975 REMARK 465 THR A 976 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 450 N CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 SO4 A 1972 O HOH A 2127 1.52 REMARK 500 O HOH A 2127 O HOH A 2186 1.57 REMARK 500 NH2 ARG A 462 O HOH A 2019 1.82 REMARK 500 OE2 GLU A 652 O1 GOL A 1980 1.97 REMARK 500 OD1 ASN A 508 O HOH A 2078 2.09 REMARK 500 O HOH A 2278 O HOH A 2343 2.12 REMARK 500 S SO4 A 1972 O HOH A 2127 2.13 REMARK 500 O HOH A 2032 O HOH A 2173 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 653 C - N - CA ANGL. DEV. = 24.1 DEGREES REMARK 500 ARG A 684 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 684 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 592 -61.64 -122.34 REMARK 500 SER A 592 -56.59 -125.10 REMARK 500 GLU A 652 -70.44 -33.53 REMARK 500 THR A 716 -167.08 -101.27 REMARK 500 SER A 749 -116.65 -136.45 REMARK 500 LEU A 752 40.85 -160.05 REMARK 500 VAL A 753 -154.75 -108.71 REMARK 500 ASN A 762 74.43 -116.49 REMARK 500 TYR A 795 142.94 -170.88 REMARK 500 ALA A 796 -119.09 48.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2161 DISTANCE = 5.94 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AR6 A 1965 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 1966 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1967 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1968 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1969 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1970 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1971 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1972 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1973 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1974 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1975 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1976 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1977 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1978 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1979 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1980 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1981 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1982 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1983 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1984 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPI A 1985 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPI A 1986 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPI A 1987 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPI A 1988 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPI A 1989 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPI A 1990 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for residues AR6 A1964 and AR6 REMARK 800 A1965 DBREF 5A7R A 448 976 UNP Q86W56 PARG_HUMAN 448 976 SEQADV 5A7R GLY A 446 UNP Q86W56 EXPRESSION TAG SEQADV 5A7R SER A 447 UNP Q86W56 EXPRESSION TAG SEQADV 5A7R ALA A 616 UNP Q86W56 LYS 616 ENGINEERED MUTATION SEQADV 5A7R ALA A 617 UNP Q86W56 GLN 617 ENGINEERED MUTATION SEQADV 5A7R ALA A 618 UNP Q86W56 LYS 618 ENGINEERED MUTATION SEQADV 5A7R ALA A 688 UNP Q86W56 GLU 688 ENGINEERED MUTATION SEQADV 5A7R ALA A 689 UNP Q86W56 LYS 689 ENGINEERED MUTATION SEQADV 5A7R ALA A 690 UNP Q86W56 LYS 690 ENGINEERED MUTATION SEQADV 5A7R ASN A 756 UNP Q86W56 GLU 756 ENGINEERED MUTATION SEQRES 1 A 531 GLY SER SER PRO ASP LYS LYS TRP LEU GLY THR PRO ILE SEQRES 2 A 531 GLU GLU MET ARG ARG MET PRO ARG CYS GLY ILE ARG LEU SEQRES 3 A 531 PRO LEU LEU ARG PRO SER ALA ASN HIS THR VAL THR ILE SEQRES 4 A 531 ARG VAL ASP LEU LEU ARG ALA GLY GLU VAL PRO LYS PRO SEQRES 5 A 531 PHE PRO THR HIS TYR LYS ASP LEU TRP ASP ASN LYS HIS SEQRES 6 A 531 VAL LYS MET PRO CYS SER GLU GLN ASN LEU TYR PRO VAL SEQRES 7 A 531 GLU ASP GLU ASN GLY GLU ARG THR ALA GLY SER ARG TRP SEQRES 8 A 531 GLU LEU ILE GLN THR ALA LEU LEU ASN LYS PHE THR ARG SEQRES 9 A 531 PRO GLN ASN LEU LYS ASP ALA ILE LEU LYS TYR ASN VAL SEQRES 10 A 531 ALA TYR SER LYS LYS TRP ASP PHE THR ALA LEU ILE ASP SEQRES 11 A 531 PHE TRP ASP LYS VAL LEU GLU GLU ALA GLU ALA GLN HIS SEQRES 12 A 531 LEU TYR GLN SER ILE LEU PRO ASP MET VAL LYS ILE ALA SEQRES 13 A 531 LEU CYS LEU PRO ASN ILE CYS THR GLN PRO ILE PRO LEU SEQRES 14 A 531 LEU ALA ALA ALA MET ASN HIS SER ILE THR MET SER GLN SEQRES 15 A 531 GLU GLN ILE ALA SER LEU LEU ALA ASN ALA PHE PHE CYS SEQRES 16 A 531 THR PHE PRO ARG ARG ASN ALA LYS MET LYS SER GLU TYR SEQRES 17 A 531 SER SER TYR PRO ASP ILE ASN PHE ASN ARG LEU PHE GLU SEQRES 18 A 531 GLY ARG SER SER ARG LYS PRO GLU LYS LEU LYS THR LEU SEQRES 19 A 531 PHE CYS TYR PHE ARG ARG VAL THR ALA ALA ALA PRO THR SEQRES 20 A 531 GLY LEU VAL THR PHE THR ARG GLN SER LEU GLU ASP PHE SEQRES 21 A 531 PRO GLU TRP GLU ARG CYS GLU LYS PRO LEU THR ARG LEU SEQRES 22 A 531 HIS VAL THR TYR GLU GLY THR ILE GLU GLU ASN GLY GLN SEQRES 23 A 531 GLY MET LEU GLN VAL ASP PHE ALA ASN ARG PHE VAL GLY SEQRES 24 A 531 GLY GLY VAL THR SER ALA GLY LEU VAL GLN GLU ASN ILE SEQRES 25 A 531 ARG PHE LEU ILE ASN PRO GLU LEU ILE ILE SER ARG LEU SEQRES 26 A 531 PHE THR GLU VAL LEU ASP HIS ASN GLU CYS LEU ILE ILE SEQRES 27 A 531 THR GLY THR GLU GLN TYR SER GLU TYR THR GLY TYR ALA SEQRES 28 A 531 GLU THR TYR ARG TRP SER ARG SER HIS GLU ASP GLY SER SEQRES 29 A 531 GLU ARG ASP ASP TRP GLN ARG ARG CYS THR GLU ILE VAL SEQRES 30 A 531 ALA ILE ASP ALA LEU HIS PHE ARG ARG TYR LEU ASP GLN SEQRES 31 A 531 PHE VAL PRO GLU LYS MET ARG ARG GLU LEU ASN LYS ALA SEQRES 32 A 531 TYR CYS GLY PHE LEU ARG PRO GLY VAL SER SER GLU ASN SEQRES 33 A 531 LEU SER ALA VAL ALA THR GLY ASN TRP GLY CYS GLY ALA SEQRES 34 A 531 PHE GLY GLY ASP ALA ARG LEU LYS ALA LEU ILE GLN ILE SEQRES 35 A 531 LEU ALA ALA ALA ALA ALA GLU ARG ASP VAL VAL TYR PHE SEQRES 36 A 531 THR PHE GLY ASP SER GLU LEU MET ARG ASP ILE TYR SER SEQRES 37 A 531 MET HIS ILE PHE LEU THR GLU ARG LYS LEU THR VAL GLY SEQRES 38 A 531 ASP VAL TYR LYS LEU LEU LEU ARG TYR TYR ASN GLU GLU SEQRES 39 A 531 CYS ARG ASN CYS SER THR PRO GLY PRO ASP ILE LYS LEU SEQRES 40 A 531 TYR PRO PHE ILE TYR HIS ALA VAL GLU SER CYS ALA GLU SEQRES 41 A 531 THR ALA ASP HIS SER GLY GLN ARG THR GLY THR HET AR6 A1964 35 HET AR6 A1965 36 HET BME A1966 4 HET SO4 A1967 5 HET SO4 A1968 5 HET SO4 A1969 5 HET SO4 A1970 5 HET SO4 A1971 5 HET SO4 A1972 5 HET SO4 A1973 5 HET GOL A1974 6 HET GOL A1975 6 HET GOL A1976 6 HET GOL A1977 6 HET GOL A1978 6 HET GOL A1979 6 HET GOL A1980 6 HET GOL A1981 6 HET GOL A1982 6 HET GOL A1983 6 HET GOL A1984 6 HET PPI A1985 5 HET PPI A1986 5 HET PPI A1987 5 HET PPI A1988 5 HET PPI A1989 5 HET PPI A1990 5 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM BME BETA-MERCAPTOETHANOL HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM PPI PROPANOIC ACID HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 AR6 2(C15 H23 N5 O14 P2) FORMUL 4 BME C2 H6 O S FORMUL 5 SO4 7(O4 S 2-) FORMUL 12 GOL 11(C3 H8 O3) FORMUL 23 PPI 6(C3 H6 O2) FORMUL 29 HOH *422(H2 O) HELIX 1 1 PRO A 457 MET A 461 5 5 HELIX 2 2 ARG A 485 LEU A 489 5 5 HELIX 3 3 ARG A 535 LEU A 544 1 10 HELIX 4 4 ARG A 549 TYR A 560 1 12 HELIX 5 5 ASN A 561 SER A 565 5 5 HELIX 6 6 PHE A 570 VAL A 580 1 11 HELIX 7 7 GLU A 582 SER A 592 1 11 HELIX 8 8 SER A 592 CYS A 603 1 12 HELIX 9 9 CYS A 603 CYS A 608 1 6 HELIX 10 10 GLN A 627 PHE A 639 1 13 HELIX 11 11 PHE A 661 GLU A 666 5 6 HELIX 12 12 ARG A 671 ALA A 689 1 19 HELIX 13 13 GLU A 707 CYS A 711 5 5 HELIX 14 14 THR A 725 GLY A 730 1 6 HELIX 15 15 GLY A 744 SER A 749 5 6 HELIX 16 16 VAL A 753 ASN A 762 1 10 HELIX 17 17 PRO A 763 ILE A 766 5 4 HELIX 18 18 ILE A 767 THR A 772 1 6 HELIX 19 19 TYR A 795 TYR A 799 5 5 HELIX 20 20 ARG A 831 PHE A 836 5 6 HELIX 21 21 VAL A 837 LEU A 853 1 17 HELIX 22 22 SER A 858 LEU A 862 5 5 HELIX 23 23 ASP A 878 ALA A 893 1 16 HELIX 24 24 ASP A 904 ARG A 921 1 18 HELIX 25 25 THR A 924 CYS A 940 1 17 HELIX 26 26 LYS A 951 SER A 962 1 12 SHEET 1 AA10 TRP A 453 GLY A 455 0 SHEET 2 AA10 LEU A 718 THR A 721 -1 O VAL A 720 N LEU A 454 SHEET 3 AA10 VAL A 897 PHE A 900 1 O VAL A 897 N HIS A 719 SHEET 4 AA10 VAL A 865 GLY A 868 1 O VAL A 865 N VAL A 898 SHEET 5 AA10 LEU A 734 ALA A 739 1 O LEU A 734 N ALA A 866 SHEET 6 AA10 GLU A 820 ASP A 825 1 O GLU A 820 N GLN A 735 SHEET 7 AA10 GLU A 779 THR A 784 -1 O LEU A 781 N ALA A 823 SHEET 8 AA10 LEU A 694 SER A 701 -1 O THR A 696 N THR A 784 SHEET 9 AA10 HIS A 621 SER A 626 -1 O HIS A 621 N ARG A 699 SHEET 10 AA10 HIS A 480 VAL A 482 1 O THR A 481 N THR A 624 SHEET 1 AB 2 LEU A 520 TYR A 521 0 SHEET 2 AB 2 GLY A 533 SER A 534 -1 O GLY A 533 N TYR A 521 SHEET 1 AC 2 SER A 790 THR A 793 0 SHEET 2 AC 2 ARG A 800 SER A 804 -1 O ARG A 800 N THR A 793 LINK SG ACYS A 603 S2 BME A1966 1555 1555 1.94 LINK C1D AR6 A1964 O2' AR6 A1965 1555 1555 1.55 CISPEP 1 MET A 464 PRO A 465 0 -2.71 CISPEP 2 PHE A 498 PRO A 499 0 -0.83 SITE 1 AC1 4 ASP A 575 CYS A 603 PRO A 673 HOH A2212 SITE 1 AC2 6 ILE A 484 ARG A 485 VAL A 486 ASP A 487 SITE 2 AC2 6 PHE A 498 HOH A2041 SITE 1 AC3 5 LYS A 567 PRO A 838 ARG A 842 HOH A2356 SITE 2 AC3 5 HOH A2417 SITE 1 AC4 2 ALA A 750 AR6 A1965 SITE 1 AC5 4 GLU A 459 MET A 461 ARG A 462 ARG A 466 SITE 1 AC6 3 GLU A 839 LYS A 840 ARG A 843 SITE 1 AC7 6 TYR A 564 ARG A 644 ASN A 646 ARG A 941 SITE 2 AC7 6 HOH A2127 HOH A2186 SITE 1 AC8 2 TRP A 506 ARG A 644 SITE 1 AC9 10 GLU A 727 GLN A 735 ARG A 758 ASN A 762 SITE 2 AC9 10 GLN A 788 SER A 809 HOH A2268 HOH A2275 SITE 3 AC9 10 HOH A2314 HOH A2331 SITE 1 BC1 7 GLU A 709 CYS A 711 GLU A 712 THR A 924 SITE 2 BC1 7 ASP A 927 LYS A 930 HOH A2418 SITE 1 BC2 5 ASN A 869 CYS A 872 ASP A 904 AR6 A1964 SITE 2 BC2 5 HOH A2378 SITE 1 BC3 4 ALA A 796 GLU A 797 AR6 A1965 HOH A2325 SITE 1 BC4 7 HIS A 828 PHE A 829 ARG A 830 ARG A 831 SITE 2 BC4 7 ASP A 834 LYS A 840 HOH A2419 SITE 1 BC5 3 ARG A 685 ALA A 689 GLU A 787 SITE 1 BC6 6 ASN A 508 LEU A 614 GLU A 652 HOH A2075 SITE 2 BC6 6 HOH A2200 HOH A2420 SITE 1 BC7 6 ASN A 740 HIS A 828 PHE A 875 AR6 A1965 SITE 2 BC7 6 HOH A2286 HOH A2421 SITE 1 BC8 3 GLU A 585 LEU A 589 HOH A2220 SITE 1 BC9 6 HIS A 501 TYR A 502 PRO A 605 ASN A 606 SITE 2 BC9 6 PPI A1987 HOH A2062 SITE 1 CC1 5 GLY A 492 GLN A 551 LYS A 554 ALA A 690 SITE 2 CC1 5 HOH A2113 SITE 1 CC2 7 TYR A 521 ARG A 535 TYR A 560 ASN A 561 SITE 2 CC2 7 VAL A 562 HOH A2125 HOH A2195 SITE 1 CC3 4 LEU A 471 ARG A 816 HOH A2235 HOH A2313 SITE 1 CC4 4 CYS A 515 GLU A 517 GOL A1983 HOH A2092 SITE 1 CC5 3 GLY A 724 PPI A1990 HOH A2264 SITE 1 CC6 3 SER A 655 ARG A 741 HOH A2199 SITE 1 CC7 6 THR A 725 TYR A 792 GLY A 794 PPI A1988 SITE 2 CC7 6 HOH A2318 HOH A2323 SITE 1 CC8 35 ARG A 663 ILE A 726 GLU A 727 PHE A 738 SITE 2 CC8 35 ASN A 740 GLY A 745 SER A 749 ALA A 750 SITE 3 CC8 35 GLY A 751 LEU A 752 VAL A 753 GLN A 754 SITE 4 CC8 35 GLU A 755 ASN A 756 TYR A 795 ASN A 869 SITE 5 CC8 35 GLY A 871 CYS A 872 GLY A 873 ALA A 874 SITE 6 CC8 35 PHE A 875 PHE A 902 SO4 A1969 GOL A1976 SITE 7 CC8 35 GOL A1977 GOL A1981 HOH A2284 HOH A2285 SITE 8 CC8 35 HOH A2288 HOH A2320 HOH A2325 HOH A2326 SITE 9 CC8 35 HOH A2327 HOH A2365 HOH A2416 CRYST1 67.457 91.277 96.123 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014824 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010956 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010403 0.00000