PDB Short entry for 5AAS HEADER PROTEIN BINDING 28-JUL-15 5AAS TITLE THE SELECTIVE AUTOPHAGY RECEPTOR TAX1BP1 IS REQUIRED FOR AUTOPHAGY- TITLE 2 DEPENDENT CAPTURE OF CYTOSOLIC SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAX1-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 722-784; COMPND 5 SYNONYM: TRAF6-BINDING PROTEIN, TAXBP1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HLTV KEYWDS PROTEIN BINDING, AUTOPHAGY, ZINC-FINGER EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.A.TUMBARELLO,P.T.MANNA,M.ALLEN,M.BYCROFT,J.KENDRICK-JONES,F.BUSS REVDAT 3 23-OCT-19 5AAS 1 REMARK ATOM REVDAT 2 30-MAR-16 5AAS 1 JRNL REVDAT 1 23-SEP-15 5AAS 0 JRNL AUTH D.A.TUMBARELLO,P.T.MANNA,M.ALLEN,M.BYCROFT,S.D.ARDEN, JRNL AUTH 2 J.KENDRICK-JONES,F.BUSS JRNL TITL THE AUTOPHAGY RECEPTOR TAX1BP1 AND THE MOLECULAR MOTOR JRNL TITL 2 MYOSIN VI ARE REQUIRED FOR CLEARANCE OF SALMONELLA JRNL TITL 3 TYPHIMURIUM BY AUTOPHAGY. JRNL REF PLOS PATHOG. V. 11 05174 2015 JRNL REFN ISSN 1553-7366 JRNL PMID 26451915 JRNL DOI 10.1371/JOURNAL.PPAT.1005174 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 5AAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1290064535. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQF-COSY; HSQC; REMARK 210 HNCACB; CBCACONH; HNCO; HNCACO; REMARK 210 HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, CNS REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 721 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 725 44.12 -94.57 REMARK 500 1 SER A 761 44.30 89.39 REMARK 500 1 GLN A 783 122.51 -177.18 REMARK 500 2 PHE A 724 -178.34 60.32 REMARK 500 2 SER A 761 43.25 95.30 REMARK 500 3 SER A 761 39.14 88.77 REMARK 500 4 ASP A 725 29.48 -143.69 REMARK 500 4 VAL A 726 102.85 -168.04 REMARK 500 4 SER A 761 41.97 86.98 REMARK 500 5 SER A 723 31.58 -144.17 REMARK 500 5 SER A 761 44.32 86.05 REMARK 500 6 SER A 723 170.00 60.18 REMARK 500 6 PHE A 724 30.84 -145.29 REMARK 500 6 ASP A 725 -175.96 -60.27 REMARK 500 6 VAL A 726 43.83 -95.18 REMARK 500 6 SER A 761 36.45 81.47 REMARK 500 7 SER A 761 44.01 88.52 REMARK 500 7 GLN A 783 97.84 61.18 REMARK 500 8 PHE A 724 105.73 -160.53 REMARK 500 8 SER A 761 35.15 83.39 REMARK 500 9 PHE A 724 89.09 59.64 REMARK 500 9 VAL A 726 57.47 -118.16 REMARK 500 9 PRO A 731 43.32 -78.60 REMARK 500 9 LEU A 732 -47.96 -145.78 REMARK 500 9 CYS A 733 -166.90 -106.22 REMARK 500 9 SER A 761 36.14 85.41 REMARK 500 10 ASP A 725 97.01 59.75 REMARK 500 10 SER A 761 45.69 84.19 REMARK 500 11 VAL A 726 86.52 -59.83 REMARK 500 11 SER A 761 37.57 85.03 REMARK 500 12 SER A 723 90.87 60.33 REMARK 500 12 PHE A 724 -64.34 -161.18 REMARK 500 12 SER A 761 34.87 81.07 REMARK 500 12 GLN A 783 -67.67 -94.85 REMARK 500 13 ASP A 725 101.14 -176.97 REMARK 500 13 PRO A 731 33.53 -87.80 REMARK 500 13 LEU A 732 -43.81 -136.82 REMARK 500 13 CYS A 733 -167.09 -109.34 REMARK 500 13 SER A 761 34.75 85.56 REMARK 500 13 GLN A 783 101.17 54.47 REMARK 500 14 SER A 723 38.06 -144.85 REMARK 500 14 SER A 761 41.87 87.61 REMARK 500 14 GLN A 783 86.52 -177.07 REMARK 500 15 CYS A 760 -39.05 -130.63 REMARK 500 15 SER A 761 33.06 105.14 REMARK 500 16 SER A 723 -49.99 -156.84 REMARK 500 16 PHE A 724 99.69 61.45 REMARK 500 16 ASP A 725 -40.26 -177.03 REMARK 500 16 VAL A 726 44.85 -164.97 REMARK 500 16 SER A 761 36.43 82.67 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 785 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 753 NE2 REMARK 620 2 HIS A 749 NE2 105.4 REMARK 620 3 CYS A 730 SG 116.4 97.7 REMARK 620 4 CYS A 733 SG 115.1 94.0 121.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 786 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 780 NE2 REMARK 620 2 CYS A 757 SG 120.2 REMARK 620 3 HIS A 776 NE2 111.6 101.3 REMARK 620 4 CYS A 760 SG 105.1 120.6 94.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 785 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 786 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AAQ RELATED DB: PDB REMARK 900 TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI- REMARK 900 BACTERIAL AUTOPHAGY REMARK 900 RELATED ID: 5AAY RELATED DB: PDB REMARK 900 TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI- REMARK 900 BACTERIAL AUTOPHAGY REMARK 900 RELATED ID: 5AAZ RELATED DB: PDB REMARK 900 TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI- REMARK 900 BACTERIAL AUTOPHAGY REMARK 900 RELATED ID: 25735 RELATED DB: BMRB DBREF 5AAS A 722 784 UNP Q86VP1 TAXB1_HUMAN 722 784 SEQADV 5AAS GLY A 721 UNP Q86VP1 EXPRESSION TAG SEQRES 1 A 64 GLY SER SER PHE ASP VAL HIS LYS LYS CYS PRO LEU CYS SEQRES 2 A 64 GLU LEU MET PHE PRO PRO ASN TYR ASP GLN SER LYS PHE SEQRES 3 A 64 GLU GLU HIS VAL GLU SER HIS TRP LYS VAL CYS PRO MET SEQRES 4 A 64 CYS SER GLU GLN PHE PRO PRO ASP TYR ASP GLN GLN VAL SEQRES 5 A 64 PHE GLU ARG HIS VAL GLN THR HIS PHE ASP GLN ASN HET ZN A 785 1 HET ZN A 786 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 ASP A 742 TRP A 754 1 13 HELIX 2 2 ASP A 769 HIS A 780 1 12 SHEET 1 AA 2 LYS A 728 LYS A 729 0 SHEET 2 AA 2 MET A 736 PHE A 737 -1 O PHE A 737 N LYS A 728 SHEET 1 AB 2 LYS A 755 VAL A 756 0 SHEET 2 AB 2 GLN A 763 PHE A 764 -1 O PHE A 764 N LYS A 755 LINK ZN ZN A 785 NE2 HIS A 753 1555 1555 2.01 LINK ZN ZN A 785 NE2 HIS A 749 1555 1555 2.04 LINK ZN ZN A 785 SG CYS A 730 1555 1555 2.25 LINK ZN ZN A 785 SG CYS A 733 1555 1555 2.35 LINK ZN ZN A 786 NE2 HIS A 780 1555 1555 2.01 LINK ZN ZN A 786 SG CYS A 757 1555 1555 2.24 LINK ZN ZN A 786 NE2 HIS A 776 1555 1555 2.03 LINK ZN ZN A 786 SG CYS A 760 1555 1555 2.35 SITE 1 AC1 4 CYS A 730 CYS A 733 HIS A 749 HIS A 753 SITE 1 AC2 4 CYS A 757 CYS A 760 HIS A 776 HIS A 780 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000