PDB Short entry for 5AAZ HEADER PROTEIN BINDING 31-JUL-15 5AAZ TITLE TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES TITLE 2 ANTI-BACTERIAL AUTOPHAGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: OPTINEURIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDES 548-577; COMPND 5 SYNONYM: E3-14.7K-INTERACTING PROTEIN, FIP-2, HUNTINGTIN YEAST COMPND 6 PARTNER L, HUNTINGTIN-INTERACTING PROTEIN 7, HIP-7, COMPND 7 HUNTINGTIN-INTERACTING PROTEIN L, NEMO-RELATED PROTEIN, OPTIC COMPND 8 NEUROPATHY-INDUCING PROTEIN, TRANSCRIPTION FACTOR IIIA-INTERACTING COMPND 9 PROTEIN, TFIIIA-INTP; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: HLTV PLASMID KEYWDS PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.L.THURSTON,M.D.ALLEN,B.RAVENHILL,M.KARPIYEVITCH,S.BLOOR,A.KAUL, AUTHOR 2 S.MATTHEWS,D.KOMANDER,D.HOLDEN,M.BYCROFT,F.RANDOW REVDAT 2 31-AUG-16 5AAZ 1 JRNL REVDAT 1 13-JUL-16 5AAZ 0 JRNL AUTH T.L.THURSTON,K.B.BOYLE,M.ALLEN,B.J.RAVENHILL,M.KARPIYEVICH, JRNL AUTH 2 S.BLOOR,A.KAUL,J.NOAD,A.FOEGLEIN,S.A.MATTHEWS,D.KOMANDER, JRNL AUTH 3 M.BYCROFT,F.RANDOW JRNL TITL RECRUITMENT OF TBK1 TO CYTOSOL-INVADING SALMONELLA INDUCES JRNL TITL 2 WIPI2-DEPENDENT ANTIBACTERIAL AUTOPHAGY. JRNL REF EMBO J. V. 35 1779 2016 JRNL REFN ISSN 0261-4189 JRNL PMID 27370208 JRNL DOI 10.15252/EMBJ.201694491 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, REMARK 3 : RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-15. REMARK 100 THE PDBE ID CODE IS EBI-64556. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 MM REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQF-COSY; REMARK 210 HSQC; HNCACB; CBCACONH; REMARK 210 HNCO; HNCACO; HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, CNS REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 489 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 501 -48.32 -136.73 REMARK 500 2 ARG A 491 165.10 59.94 REMARK 500 3 ASN A 492 -44.78 -156.93 REMARK 500 3 CYS A 501 -48.09 -131.14 REMARK 500 4 ASN A 492 -168.47 -102.74 REMARK 500 6 ASN A 492 -77.58 -58.83 REMARK 500 7 ASN A 492 -72.41 65.21 REMARK 500 8 CYS A 501 -49.77 -132.07 REMARK 500 9 CYS A 501 -51.01 -132.38 REMARK 500 13 ARG A 491 144.27 63.12 REMARK 500 15 ASN A 492 -178.84 -60.92 REMARK 500 16 CYS A 501 -45.35 -131.23 REMARK 500 18 ARG A 491 168.17 60.75 REMARK 500 19 ASN A 492 -39.75 -176.97 REMARK 500 20 ASN A 492 39.43 -99.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A1521 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 501 SG REMARK 620 2 CYS A 518 SG 116.4 REMARK 620 3 CYS A 498 SG 110.8 116.1 REMARK 620 4 HIS A 514 NE2 101.7 114.1 94.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1521 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AAQ RELATED DB: PDB REMARK 900 TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES REMARK 900 ANTI-BACTERIAL AUTOPHAGY REMARK 900 RELATED ID: 5AAS RELATED DB: PDB REMARK 900 THE SELECTIVE AUTOPHAGY RECEPTOR TAX1BP1 IS REQUIRED FOR REMARK 900 AUTOPHAGY-DEPENDENT CAPTURE OF CYTOSOLIC SALMONELLA REMARK 900 TYPHIMURIUM REMARK 900 RELATED ID: 5AAY RELATED DB: PDB REMARK 900 TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES REMARK 900 ANTI-BACTERIAL AUTOPHAGY DBREF 5AAZ A 491 520 UNP Q96CV9 OPTN_HUMAN 548 577 SEQADV 5AAZ GLY A 489 UNP Q96CV9 EXPRESSION TAG SEQADV 5AAZ SER A 490 UNP Q96CV9 EXPRESSION TAG SEQRES 1 A 32 GLY SER ARG ASN ILE PRO ILE HIS SER CYS PRO LYS CYS SEQRES 2 A 32 GLY GLU VAL LEU PRO ASP ILE ASP THR LEU GLN ILE HIS SEQRES 3 A 32 VAL MET ASP CYS ILE ILE HET ZN A1521 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ASP A 507 ASP A 517 1 11 SHEET 1 AA 2 HIS A 496 SER A 497 0 SHEET 2 AA 2 VAL A 504 LEU A 505 -1 O LEU A 505 N HIS A 496 LINK ZN ZN A1521 SG CYS A 501 1555 1555 2.35 LINK ZN ZN A1521 SG CYS A 518 1555 1555 2.31 LINK ZN ZN A1521 SG CYS A 498 1555 1555 2.35 LINK ZN ZN A1521 NE2 HIS A 514 1555 1555 2.05 SITE 1 AC1 4 CYS A 498 CYS A 501 HIS A 514 CYS A 518 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000