PDB Short entry for 5ABT HEADER ISOMERASE 08-AUG-15 5ABT TITLE S.ENTERICA HISA MUTANT D7N, G102A, V106M, D176A COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO) METHYLIDENE COMPND 3 AMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE COMPND 6 RIBOTIDE ISOMERASE, HISA; COMPND 7 EC: 5.3.1.16; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA; SOURCE 3 ORGANISM_TAXID: 28901; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEXP5-CT KEYWDS ISOMERASE, PROTEIN EVOLUTION, IAD MODEL, TRPF EXPDTA X-RAY DIFFRACTION AUTHOR X.GUO,A.SODERHOLM,M.NEWTON,J.NASVALL,D.ANDERSSON,W.PATRICK,M.SELMER REVDAT 2 10-JAN-24 5ABT 1 REMARK SHEET REVDAT 1 28-SEP-16 5ABT 0 JRNL AUTH M.NEWTON,X.GUO,A.SODERHOLM,J.NASVALL,D.ANDERSSON,W.PATRICK, JRNL AUTH 2 M.SELMER JRNL TITL THE PROTEIN STRUCTURES, FUNCTIONS AND DYNAMICS OF ADAPTIVE JRNL TITL 2 EVOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 30686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3298 - 3.5537 1.00 3160 174 0.1446 0.1624 REMARK 3 2 3.5537 - 2.8209 1.00 3006 159 0.1728 0.1880 REMARK 3 3 2.8209 - 2.4644 1.00 2942 130 0.1746 0.1770 REMARK 3 4 2.4644 - 2.2391 1.00 2950 111 0.1664 0.1988 REMARK 3 5 2.2391 - 2.0786 0.99 2933 152 0.1699 0.2018 REMARK 3 6 2.0786 - 1.9560 0.99 2861 135 0.1702 0.2196 REMARK 3 7 1.9560 - 1.8581 0.99 2856 156 0.1707 0.1964 REMARK 3 8 1.8581 - 1.7772 0.99 2893 134 0.1717 0.2082 REMARK 3 9 1.7772 - 1.7088 0.99 2840 137 0.1779 0.2517 REMARK 3 10 1.7088 - 1.6498 0.99 2781 176 0.1914 0.2101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1968 REMARK 3 ANGLE : 1.440 2693 REMARK 3 CHIRALITY : 0.062 321 REMARK 3 PLANARITY : 0.006 350 REMARK 3 DIHEDRAL : 14.790 772 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:6) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5980 17.2877 -19.4843 REMARK 3 T TENSOR REMARK 3 T11: 0.1349 T22: 0.1909 REMARK 3 T33: 0.1942 T12: 0.0078 REMARK 3 T13: 0.0216 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 6.7964 L22: 6.8170 REMARK 3 L33: 8.3308 L12: 5.8222 REMARK 3 L13: -4.7045 L23: -7.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0751 S13: -0.2074 REMARK 3 S21: 0.3524 S22: 0.2954 S23: 0.4080 REMARK 3 S31: -0.2545 S32: -0.3699 S33: -0.2939 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 7:23) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7406 23.6191 -28.5125 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.1758 REMARK 3 T33: 0.1333 T12: -0.0323 REMARK 3 T13: 0.0222 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 4.9881 L22: 3.0710 REMARK 3 L33: 2.9663 L12: -2.3007 REMARK 3 L13: -0.5761 L23: 0.8974 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: 0.2946 S13: 0.2336 REMARK 3 S21: -0.1662 S22: 0.0036 S23: -0.1222 REMARK 3 S31: -0.1184 S32: 0.1372 S33: 0.0084 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 24:27) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7802 22.4904 -34.1580 REMARK 3 T TENSOR REMARK 3 T11: 0.2449 T22: 0.3473 REMARK 3 T33: 0.2063 T12: -0.0796 REMARK 3 T13: 0.0060 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: 2.4363 L22: 1.1637 REMARK 3 L33: 2.9910 L12: -1.6838 REMARK 3 L13: 0.3543 L23: -0.1009 REMARK 3 S TENSOR REMARK 3 S11: -0.4070 S12: 0.6751 S13: 0.0487 REMARK 3 S21: -0.2621 S22: 0.2046 S23: -0.1286 REMARK 3 S31: 0.0453 S32: 0.2929 S33: 0.2058 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 28:40) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7091 25.8382 -28.3038 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: 0.2611 REMARK 3 T33: 0.2374 T12: 0.0331 REMARK 3 T13: -0.0631 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 3.3850 L22: 2.6910 REMARK 3 L33: 3.3422 L12: -0.3154 REMARK 3 L13: 1.6718 L23: 0.1195 REMARK 3 S TENSOR REMARK 3 S11: -0.0876 S12: 0.2685 S13: 0.2188 REMARK 3 S21: -0.0991 S22: 0.1160 S23: 0.2587 REMARK 3 S31: -0.1855 S32: -0.3755 S33: -0.0025 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 41:54) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0031 23.9985 -20.2387 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.1575 REMARK 3 T33: 0.1486 T12: 0.0351 REMARK 3 T13: -0.0080 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 6.6587 L22: 4.3813 REMARK 3 L33: 2.2517 L12: 3.2661 REMARK 3 L13: 1.2380 L23: 0.7213 REMARK 3 S TENSOR REMARK 3 S11: 0.0979 S12: -0.1715 S13: 0.2859 REMARK 3 S21: 0.1580 S22: 0.0144 S23: 0.2716 REMARK 3 S31: -0.2537 S32: -0.3242 S33: 0.1481 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 55:72) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6057 34.2317 -20.0583 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.1657 REMARK 3 T33: 0.1896 T12: 0.0491 REMARK 3 T13: -0.0337 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 5.5107 L22: 3.2973 REMARK 3 L33: 3.1832 L12: 1.2022 REMARK 3 L13: 1.2564 L23: -0.0663 REMARK 3 S TENSOR REMARK 3 S11: -0.2070 S12: -0.0914 S13: 0.7134 REMARK 3 S21: -0.0328 S22: 0.0796 S23: 0.0727 REMARK 3 S31: -0.5827 S32: -0.1942 S33: 0.0810 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 73:85) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3740 28.7372 -12.6313 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: 0.2096 REMARK 3 T33: 0.1293 T12: 0.0637 REMARK 3 T13: -0.0114 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.6982 L22: 4.6762 REMARK 3 L33: 3.0509 L12: 2.2094 REMARK 3 L13: -0.4381 L23: 0.9192 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: -0.3619 S13: 0.2428 REMARK 3 S21: 0.4221 S22: 0.0345 S23: 0.2104 REMARK 3 S31: -0.2346 S32: -0.2832 S33: 0.0453 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 86:94) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9706 35.2111 -8.5883 REMARK 3 T TENSOR REMARK 3 T11: 0.3355 T22: 0.2738 REMARK 3 T33: 0.1962 T12: 0.1548 REMARK 3 T13: -0.0125 T23: -0.1156 REMARK 3 L TENSOR REMARK 3 L11: 9.7491 L22: 7.7233 REMARK 3 L33: 4.1882 L12: -1.9936 REMARK 3 L13: -2.6579 L23: -4.0257 REMARK 3 S TENSOR REMARK 3 S11: -0.4728 S12: -0.9386 S13: 0.9614 REMARK 3 S21: 0.5733 S22: 0.0847 S23: -0.0209 REMARK 3 S31: -0.9091 S32: -0.0187 S33: -0.1678 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 95:106) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6342 25.7323 -9.3872 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.2083 REMARK 3 T33: 0.1080 T12: 0.0521 REMARK 3 T13: -0.0173 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 4.9542 L22: 3.6336 REMARK 3 L33: 3.1436 L12: -0.7241 REMARK 3 L13: 0.8317 L23: -0.2710 REMARK 3 S TENSOR REMARK 3 S11: -0.0707 S12: -0.3224 S13: -0.1455 REMARK 3 S21: 0.1404 S22: 0.1446 S23: 0.0792 REMARK 3 S31: -0.1794 S32: -0.0953 S33: -0.0389 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 107:119) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3587 28.4600 -0.3770 REMARK 3 T TENSOR REMARK 3 T11: 0.3064 T22: 0.4493 REMARK 3 T33: 0.1571 T12: 0.1116 REMARK 3 T13: -0.0453 T23: -0.0893 REMARK 3 L TENSOR REMARK 3 L11: 4.6048 L22: 4.0290 REMARK 3 L33: 2.1007 L12: -0.3851 REMARK 3 L13: -2.3811 L23: 1.8390 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: -0.8318 S13: 0.2097 REMARK 3 S21: 0.3338 S22: 0.0813 S23: -0.0865 REMARK 3 S31: -0.4298 S32: 0.0006 S33: -0.0538 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 120:132) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7675 18.7605 -9.7071 REMARK 3 T TENSOR REMARK 3 T11: 0.1406 T22: 0.2814 REMARK 3 T33: 0.1469 T12: 0.0607 REMARK 3 T13: -0.0078 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 5.5560 L22: 8.2564 REMARK 3 L33: 6.2720 L12: -6.5907 REMARK 3 L13: -5.4613 L23: 6.4740 REMARK 3 S TENSOR REMARK 3 S11: -0.1799 S12: -0.3334 S13: -0.0703 REMARK 3 S21: 0.3251 S22: 0.0732 S23: 0.0739 REMARK 3 S31: 0.0744 S32: -0.0659 S33: 0.1044 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 133:139) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7353 7.9842 -13.1685 REMARK 3 T TENSOR REMARK 3 T11: 0.2378 T22: 0.3766 REMARK 3 T33: 0.2826 T12: 0.1215 REMARK 3 T13: -0.0323 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.7453 L22: 9.5802 REMARK 3 L33: 2.5669 L12: -1.1740 REMARK 3 L13: 2.6115 L23: -1.9555 REMARK 3 S TENSOR REMARK 3 S11: 0.2313 S12: 0.1212 S13: -0.3320 REMARK 3 S21: -0.5614 S22: -0.0108 S23: -0.6312 REMARK 3 S31: 0.6713 S32: 0.9182 S33: -0.0573 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 140:166) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4616 18.5499 -7.3168 REMARK 3 T TENSOR REMARK 3 T11: 0.1589 T22: 0.2660 REMARK 3 T33: 0.1590 T12: 0.0484 REMARK 3 T13: -0.0400 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.1369 L22: 1.5939 REMARK 3 L33: 5.2597 L12: -0.6236 REMARK 3 L13: 0.5395 L23: -0.8995 REMARK 3 S TENSOR REMARK 3 S11: -0.1600 S12: -0.3724 S13: -0.0250 REMARK 3 S21: 0.2324 S22: 0.1422 S23: -0.1700 REMARK 3 S31: 0.0175 S32: 0.2134 S33: 0.0454 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 167:184) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6020 11.2540 -19.1553 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.1593 REMARK 3 T33: 0.1727 T12: 0.0204 REMARK 3 T13: 0.0059 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 2.1719 L22: 0.9695 REMARK 3 L33: 4.7611 L12: 0.0741 REMARK 3 L13: 0.4064 L23: 0.2692 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: -0.1590 S13: -0.2869 REMARK 3 S21: 0.0144 S22: 0.1529 S23: 0.0005 REMARK 3 S31: 0.1995 S32: -0.0192 S33: -0.0641 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 185:189) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7039 4.2498 -12.0063 REMARK 3 T TENSOR REMARK 3 T11: 0.2746 T22: 0.2298 REMARK 3 T33: 0.4466 T12: 0.0366 REMARK 3 T13: 0.0241 T23: 0.1657 REMARK 3 L TENSOR REMARK 3 L11: 3.1164 L22: 3.1449 REMARK 3 L33: 2.0860 L12: -0.0810 REMARK 3 L13: -0.4377 L23: -2.4151 REMARK 3 S TENSOR REMARK 3 S11: -0.2005 S12: -0.6361 S13: -1.0674 REMARK 3 S21: -0.0438 S22: 0.2556 S23: 0.2218 REMARK 3 S31: 0.8118 S32: 0.0820 S33: -0.1301 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 190:213) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5934 7.9576 -12.8596 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.2286 REMARK 3 T33: 0.2658 T12: -0.0020 REMARK 3 T13: 0.0037 T23: 0.1345 REMARK 3 L TENSOR REMARK 3 L11: 1.8735 L22: 1.2143 REMARK 3 L33: 4.0837 L12: -0.5349 REMARK 3 L13: 0.1069 L23: -0.4825 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: -0.3983 S13: -0.6771 REMARK 3 S21: 0.1467 S22: 0.1866 S23: 0.1627 REMARK 3 S31: 0.2883 S32: -0.1231 S33: -0.1527 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 214:229) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4489 10.2079 -19.1585 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.1802 REMARK 3 T33: 0.2322 T12: -0.0299 REMARK 3 T13: 0.0146 T23: 0.0724 REMARK 3 L TENSOR REMARK 3 L11: 2.1804 L22: 3.4522 REMARK 3 L33: 7.2336 L12: -0.1467 REMARK 3 L13: 1.2656 L23: -1.4824 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: -0.1328 S13: -0.5778 REMARK 3 S21: 0.2239 S22: 0.1733 S23: 0.2417 REMARK 3 S31: 0.3223 S32: -0.3462 S33: 0.0954 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 230:235) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1786 12.1541 -30.3439 REMARK 3 T TENSOR REMARK 3 T11: 0.1336 T22: 0.2017 REMARK 3 T33: 0.2317 T12: -0.0222 REMARK 3 T13: -0.0431 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 5.0333 L22: 7.4790 REMARK 3 L33: 3.9657 L12: 1.4452 REMARK 3 L13: 4.4651 L23: 1.5985 REMARK 3 S TENSOR REMARK 3 S11: -0.1364 S12: 0.4997 S13: -0.7228 REMARK 3 S21: -0.1908 S22: 0.1010 S23: 0.0604 REMARK 3 S31: 0.3810 S32: -0.2916 S33: -0.1575 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 236:241) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8782 8.4837 -23.4364 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.4152 REMARK 3 T33: 0.4633 T12: -0.1317 REMARK 3 T13: -0.0311 T23: 0.1154 REMARK 3 L TENSOR REMARK 3 L11: 7.2851 L22: 4.5238 REMARK 3 L33: 6.0519 L12: 0.4652 REMARK 3 L13: 2.6201 L23: 1.2548 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.2127 S13: -0.9585 REMARK 3 S21: -0.2241 S22: 0.4426 S23: 1.3549 REMARK 3 S31: 0.5703 S32: -0.7756 S33: -0.1948 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 242:246) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3369 4.7013 -16.2410 REMARK 3 T TENSOR REMARK 3 T11: 0.3945 T22: 0.3298 REMARK 3 T33: 0.4766 T12: -0.1332 REMARK 3 T13: -0.0361 T23: 0.0919 REMARK 3 L TENSOR REMARK 3 L11: 3.3543 L22: 5.6869 REMARK 3 L33: 6.6307 L12: -3.4168 REMARK 3 L13: 0.8546 L23: -4.6094 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.7086 S13: 0.8919 REMARK 3 S21: -0.7599 S22: 0.6352 S23: 1.9283 REMARK 3 S31: 0.2287 S32: -1.3043 S33: -0.4924 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 247-253 ARE DISORDERED. K246 REMARK 3 IS REPLACED BY ALANINE DUE TO POOR DENSITY REMARK 4 REMARK 4 5ABT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064641. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979490 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.050 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.550 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.56 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5A5W REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS SCREEN H9, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.45933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.91867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.91867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.45933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 246 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 193 CA - C - O ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 193 CA - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 61 58.96 -94.97 REMARK 500 ALA A 102 -66.78 -126.63 REMARK 500 LYS A 166 -31.05 -132.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GUO A 1247 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5AC6 RELATED DB: PDB REMARK 900 S. ENTERICA HISA WITH MUTATIONS D7N, D10G, DUP13-15, Q24L, G102A REMARK 900 RELATED ID: 5AC7 RELATED DB: PDB REMARK 900 S. ENTERICA HISA WITH MUTATIONS D7N, D10G, DUP13-15, Q24L, G102A REMARK 900 RELATED ID: 5AC8 RELATED DB: PDB REMARK 900 S. ENTERICA HISA WITH MUTATIONS D10G, DUP13-15, G102A DBREF 5ABT A 1 245 UNP V7IJE3 V7IJE3_SALET 1 245 SEQADV 5ABT LYS A 246 UNP V7IJE3 EXPRESSION TAG SEQADV 5ABT GLY A 247 UNP V7IJE3 EXPRESSION TAG SEQADV 5ABT HIS A 248 UNP V7IJE3 EXPRESSION TAG SEQADV 5ABT HIS A 249 UNP V7IJE3 EXPRESSION TAG SEQADV 5ABT HIS A 250 UNP V7IJE3 EXPRESSION TAG SEQADV 5ABT HIS A 251 UNP V7IJE3 EXPRESSION TAG SEQADV 5ABT HIS A 252 UNP V7IJE3 EXPRESSION TAG SEQADV 5ABT HIS A 253 UNP V7IJE3 EXPRESSION TAG SEQADV 5ABT ASN A 7 UNP V7IJE3 ASP 7 ENGINEERED MUTATION SEQADV 5ABT ALA A 102 UNP V7IJE3 GLY 102 ENGINEERED MUTATION SEQADV 5ABT MET A 106 UNP V7IJE3 VAL 106 ENGINEERED MUTATION SEQADV 5ABT ALA A 176 UNP V7IJE3 ASP 176 ENGINEERED MUTATION SEQRES 1 A 253 MET ILE ILE PRO ALA LEU ASN LEU ILE ASP GLY THR VAL SEQRES 2 A 253 VAL ARG LEU HIS GLN GLY ASP TYR ALA ARG GLN ARG ASP SEQRES 3 A 253 TYR GLY ASN ASP PRO LEU PRO ARG LEU GLN ASP TYR ALA SEQRES 4 A 253 ALA GLN GLY ALA GLY VAL LEU HIS LEU VAL ASP LEU THR SEQRES 5 A 253 GLY ALA LYS ASP PRO ALA LYS ARG GLN ILE PRO LEU ILE SEQRES 6 A 253 LYS THR LEU VAL ALA GLY VAL ASN VAL PRO VAL GLN VAL SEQRES 7 A 253 GLY GLY GLY VAL ARG THR GLU GLU ASP VAL ALA ALA LEU SEQRES 8 A 253 LEU LYS ALA GLY VAL ALA ARG VAL VAL ILE ALA SER THR SEQRES 9 A 253 ALA MET LYS SER PRO ASP VAL VAL LYS GLY TRP PHE GLU SEQRES 10 A 253 ARG PHE GLY ALA GLN ALA LEU VAL LEU ALA LEU ASP VAL SEQRES 11 A 253 ARG ILE ASP GLU HIS GLY THR LYS GLN VAL ALA VAL SER SEQRES 12 A 253 GLY TRP GLN GLU ASN SER GLY VAL SER LEU GLU GLN LEU SEQRES 13 A 253 VAL GLU THR TYR LEU PRO VAL GLY LEU LYS HIS VAL LEU SEQRES 14 A 253 CYS THR ASP ILE SER ARG ALA GLY THR LEU ALA GLY SER SEQRES 15 A 253 ASN VAL SER LEU TYR GLU GLU VAL CYS ALA ARG TYR PRO SEQRES 16 A 253 GLN ILE ALA PHE GLN SER SER GLY GLY ILE GLY ASP ILE SEQRES 17 A 253 ASP ASP ILE ALA ALA LEU ARG GLY THR GLY VAL ARG GLY SEQRES 18 A 253 VAL ILE VAL GLY ARG ALA LEU LEU GLU GLY LYS PHE THR SEQRES 19 A 253 VAL LYS GLU ALA ILE GLN CYS TRP GLN ASN VAL LYS GLY SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS HET GUO A1247 37 HETNAM GUO [(2R,3S,4R,5R)-5-[4-AMINOCARBONYL-5-[(E)-[[(2R,3R,4S, HETNAM 2 GUO 5R)-3,4-BIS(OXIDANYL)-5-(PHOSPHONOOXYMETHYL)OXOLAN-2- HETNAM 3 GUO YL]AMINO]METHYLIDENEAMINO]IMIDAZOL-1-YL]-3,4- HETNAM 4 GUO BIS(OXIDANYL)OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHATE FORMUL 2 GUO C15 H25 N5 O15 P2 FORMUL 3 HOH *226(H2 O) HELIX 1 1 GLN A 18 ASP A 20 5 3 HELIX 2 2 ASP A 30 GLN A 41 1 12 HELIX 3 3 LEU A 51 ASP A 56 1 6 HELIX 4 4 PRO A 57 ARG A 60 5 4 HELIX 5 5 GLN A 61 GLY A 71 1 11 HELIX 6 6 THR A 84 ALA A 94 1 11 HELIX 7 7 ALA A 102 SER A 108 1 7 HELIX 8 8 SER A 108 GLY A 120 1 13 HELIX 9 9 LEU A 153 LEU A 161 1 9 HELIX 10 10 PRO A 162 GLY A 164 5 3 HELIX 11 11 ASN A 183 TYR A 194 1 12 HELIX 12 12 ASP A 207 ALA A 213 1 7 HELIX 13 13 GLY A 225 GLU A 230 1 6 HELIX 14 14 THR A 234 LYS A 246 1 13 SHEET 1 AA 9 ILE A 2 ILE A 9 0 SHEET 2 AA 9 GLY A 221 VAL A 224 1 O VAL A 222 N ILE A 3 SHEET 3 AA 9 ALA A 198 SER A 202 1 O SER A 201 N ILE A 223 SHEET 4 AA 9 HIS A 167 THR A 171 1 O VAL A 168 N GLN A 200 SHEET 5 AA 9 LEU A 124 ALA A 127 1 O LEU A 126 N LEU A 169 SHEET 6 AA 9 ARG A 98 ILE A 101 1 O VAL A 99 N VAL A 125 SHEET 7 AA 9 VAL A 76 GLY A 79 1 O VAL A 78 N VAL A 100 SHEET 8 AA 9 LEU A 46 ASP A 50 1 O LEU A 46 N GLN A 77 SHEET 9 AA 9 ILE A 2 ILE A 9 1 O ILE A 3 N VAL A 224 SHEET 1 AB 3 VAL A 130 ILE A 132 0 SHEET 2 AB 3 LYS A 138 VAL A 142 -1 O GLN A 139 N ARG A 131 SHEET 3 AB 3 GLU A 147 SER A 152 -1 O GLU A 147 N VAL A 142 SITE 1 AC1 32 ASN A 7 GLY A 19 HIS A 47 VAL A 49 SITE 2 AC1 32 LEU A 51 GLY A 80 GLY A 81 ARG A 83 SITE 3 AC1 32 VAL A 100 ALA A 102 SER A 103 ASP A 129 SITE 4 AC1 32 GLY A 144 TRP A 145 ALA A 176 GLY A 177 SITE 5 AC1 32 SER A 202 GLY A 203 GLY A 204 ILE A 223 SITE 6 AC1 32 GLY A 225 ARG A 226 HOH A2076 HOH A2080 SITE 7 AC1 32 HOH A2100 HOH A2101 HOH A2148 HOH A2173 SITE 8 AC1 32 HOH A2197 HOH A2198 HOH A2225 HOH A2226 CRYST1 46.555 46.555 196.378 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021480 0.012401 0.000000 0.00000 SCALE2 0.000000 0.024803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005092 0.00000