PDB Short entry for 5AEA HEADER CELL ADHESION 27-AUG-15 5AEA TITLE CRYSTAL STRUCTURE OF HUMAN NCAM DOMAIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL CELL ADHESION MOLECULE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-116; COMPND 5 SYNONYM: N-CAM-1, NCAM-1, NCAM DOMAIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TG1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGC KEYWDS CELL ADHESION, NCAM EXPDTA X-RAY DIFFRACTION AUTHOR M.KVANSAKUL,K.GRIFFITHS,M.FOLEY REVDAT 4 10-JAN-24 5AEA 1 REMARK REVDAT 3 23-OCT-19 5AEA 1 ATOM REVDAT 2 29-JUN-16 5AEA 1 JRNL REVDAT 1 13-APR-16 5AEA 0 JRNL AUTH K.GRIFFITHS,O.DOLEZAL,B.CAO,S.K.NILSSON,H.B.SEE, JRNL AUTH 2 K.D.G.PFLEGER,M.ROCHE,P.R.GORRY,A.POW,K.VIDUKA,K.LIM, JRNL AUTH 3 B.G.C.LU,D.H.C.CHANG,T.MURRAY-RUST,M.KVANSAKUL,M.A.PERUGINI, JRNL AUTH 4 C.DOGOVSKI,M.DOERFLINGER,Y.ZHANG,K.PARISI,J.L.CASEY, JRNL AUTH 5 S.D.NUTTALL,M.FOLEY JRNL TITL I-BODIES, HUMAN SINGLE DOMAIN ANTIBODIES THAT ANTAGONIZE JRNL TITL 2 CHEMOKINE RECEPTOR CXCR4. JRNL REF J.BIOL.CHEM. V. 291 12641 2016 JRNL REFN ISSN 0021-9258 JRNL PMID 27036939 JRNL DOI 10.1074/JBC.M116.721050 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4441 - 3.2484 1.00 3136 160 0.1410 0.1464 REMARK 3 2 3.2484 - 2.5785 1.00 3089 159 0.1784 0.2318 REMARK 3 3 2.5785 - 2.2526 1.00 3132 140 0.1922 0.2343 REMARK 3 4 2.2526 - 2.0467 1.00 3097 150 0.2065 0.2691 REMARK 3 5 2.0467 - 1.9000 1.00 3074 155 0.2368 0.2558 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1547 REMARK 3 ANGLE : 1.095 2105 REMARK 3 CHIRALITY : 0.055 239 REMARK 3 PLANARITY : 0.005 277 REMARK 3 DIHEDRAL : 16.411 566 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3797 2.7572 16.9735 REMARK 3 T TENSOR REMARK 3 T11: 0.5007 T22: 0.2916 REMARK 3 T33: 0.2387 T12: 0.0097 REMARK 3 T13: 0.0162 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 1.7376 L22: 2.0726 REMARK 3 L33: 0.0967 L12: -1.8934 REMARK 3 L13: 0.4036 L23: -0.4447 REMARK 3 S TENSOR REMARK 3 S11: -0.5018 S12: -0.5710 S13: 0.6399 REMARK 3 S21: 0.7074 S22: 0.2187 S23: 0.0723 REMARK 3 S31: -0.5553 S32: 0.2464 S33: -0.0984 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4010 -11.7540 9.4699 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.2587 REMARK 3 T33: 0.2391 T12: -0.0201 REMARK 3 T13: 0.0666 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.1496 L22: 0.5599 REMARK 3 L33: 0.2368 L12: -0.0962 REMARK 3 L13: 0.0347 L23: -0.0418 REMARK 3 S TENSOR REMARK 3 S11: -0.1909 S12: -0.1790 S13: -0.3667 REMARK 3 S21: 0.6379 S22: -0.1047 S23: 0.3971 REMARK 3 S31: 0.2325 S32: 0.1342 S33: 0.0138 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2061 3.1877 8.7055 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.1932 REMARK 3 T33: 0.2171 T12: 0.0064 REMARK 3 T13: 0.0509 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 1.0788 L22: 0.4018 REMARK 3 L33: 0.8965 L12: 0.0674 REMARK 3 L13: -0.2062 L23: -0.6751 REMARK 3 S TENSOR REMARK 3 S11: 0.2322 S12: -0.1044 S13: 0.1936 REMARK 3 S21: 0.3899 S22: -0.3111 S23: 0.3820 REMARK 3 S31: -0.0995 S32: -0.2781 S33: 0.0114 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2939 2.4646 1.8337 REMARK 3 T TENSOR REMARK 3 T11: 0.1402 T22: 0.1753 REMARK 3 T33: 0.1682 T12: 0.0120 REMARK 3 T13: -0.0088 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3240 L22: 0.9797 REMARK 3 L33: 0.3905 L12: 0.5027 REMARK 3 L13: 0.2366 L23: 0.0351 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: -0.0671 S13: 0.0366 REMARK 3 S21: -0.3368 S22: 0.0362 S23: 0.0133 REMARK 3 S31: -0.1116 S32: 0.0324 S33: -0.0274 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6315 -4.1252 4.2461 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.1720 REMARK 3 T33: 0.1527 T12: 0.0116 REMARK 3 T13: 0.0450 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.4733 L22: 2.4300 REMARK 3 L33: 0.0425 L12: -0.0071 REMARK 3 L13: -0.0739 L23: -0.0853 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.0399 S13: 0.0371 REMARK 3 S21: 0.0825 S22: -0.0655 S23: -0.5868 REMARK 3 S31: 0.1632 S32: -0.0327 S33: 0.0112 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0977 -3.0782 11.0062 REMARK 3 T TENSOR REMARK 3 T11: 0.3068 T22: 0.1903 REMARK 3 T33: 0.1619 T12: -0.0198 REMARK 3 T13: -0.0637 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.8511 L22: 0.3322 REMARK 3 L33: 0.6609 L12: 0.1212 REMARK 3 L13: 0.1156 L23: -0.4602 REMARK 3 S TENSOR REMARK 3 S11: 0.1049 S12: -0.0370 S13: -0.0008 REMARK 3 S21: 0.0288 S22: -0.3247 S23: 0.3018 REMARK 3 S31: -0.1776 S32: -0.1018 S33: -0.0027 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7052 11.8406 -15.3947 REMARK 3 T TENSOR REMARK 3 T11: 0.4441 T22: 0.4536 REMARK 3 T33: 0.3342 T12: -0.1414 REMARK 3 T13: 0.0458 T23: -0.1074 REMARK 3 L TENSOR REMARK 3 L11: 2.1258 L22: 1.9422 REMARK 3 L33: 4.0899 L12: 1.5995 REMARK 3 L13: 0.4530 L23: -0.9997 REMARK 3 S TENSOR REMARK 3 S11: 0.1463 S12: 0.2675 S13: -0.5186 REMARK 3 S21: -0.1918 S22: 0.1587 S23: -0.3000 REMARK 3 S31: 0.1367 S32: 0.6489 S33: 0.0627 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2532 15.5990 -11.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.3261 T22: 0.2455 REMARK 3 T33: 0.1522 T12: -0.0619 REMARK 3 T13: -0.0084 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 1.2856 L22: 0.6069 REMARK 3 L33: 0.5846 L12: -0.2855 REMARK 3 L13: 0.5433 L23: 0.1034 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: 0.2172 S13: -0.2488 REMARK 3 S21: -0.5876 S22: 0.2538 S23: 0.1556 REMARK 3 S31: -0.0421 S32: 0.1753 S33: 0.0463 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6804 17.3354 -4.0314 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.1990 REMARK 3 T33: 0.2075 T12: -0.0272 REMARK 3 T13: -0.0095 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.5283 L22: 0.7861 REMARK 3 L33: 0.3548 L12: -0.2274 REMARK 3 L13: 0.0305 L23: -0.4502 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: -0.0299 S13: -0.0493 REMARK 3 S21: -0.1117 S22: 0.1538 S23: 0.1764 REMARK 3 S31: 0.0763 S32: -0.1260 S33: -0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5659 8.2623 -6.1744 REMARK 3 T TENSOR REMARK 3 T11: 0.3230 T22: 0.2387 REMARK 3 T33: 0.5281 T12: 0.0529 REMARK 3 T13: 0.0492 T23: -0.1362 REMARK 3 L TENSOR REMARK 3 L11: 0.7287 L22: 1.6498 REMARK 3 L33: 1.0324 L12: 0.2754 REMARK 3 L13: 0.7141 L23: 0.4152 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: 0.4444 S13: -1.2120 REMARK 3 S21: 0.1144 S22: 0.1888 S23: -0.2388 REMARK 3 S31: 0.5946 S32: 0.3517 S33: 0.1159 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8275 25.8564 -7.6615 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.2056 REMARK 3 T33: 0.3078 T12: -0.0959 REMARK 3 T13: 0.0387 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.8377 L22: 0.7369 REMARK 3 L33: 1.7371 L12: -0.5385 REMARK 3 L13: 0.3223 L23: 0.0334 REMARK 3 S TENSOR REMARK 3 S11: -0.3587 S12: 0.4622 S13: -0.0371 REMARK 3 S21: -0.1555 S22: 0.0940 S23: -0.0387 REMARK 3 S31: -0.6482 S32: -0.1062 S33: -0.0923 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AEA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1290064807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.88 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16311 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1QZ1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.45 M TRI-SODIUM CITRATE PH 6.88 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.66350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 101 REMARK 465 TYR A 102 REMARK 465 LYS A 103 REMARK 465 ASP A 104 REMARK 465 ASP A 105 REMARK 465 ASP A 106 REMARK 465 ASP A 107 REMARK 465 LYS A 108 REMARK 465 ALA A 109 REMARK 465 ALA A 110 REMARK 465 ASP A 111 REMARK 465 TYR A 112 REMARK 465 LYS A 113 REMARK 465 ASP A 114 REMARK 465 ASP A 115 REMARK 465 ASP A 116 REMARK 465 ASP A 117 REMARK 465 LYS A 118 REMARK 465 GLY B 84 REMARK 465 ALA B 100 REMARK 465 ASP B 101 REMARK 465 TYR B 102 REMARK 465 LYS B 103 REMARK 465 ASP B 104 REMARK 465 ASP B 105 REMARK 465 ASP B 106 REMARK 465 ASP B 107 REMARK 465 LYS B 108 REMARK 465 ALA B 109 REMARK 465 ALA B 110 REMARK 465 ASP B 111 REMARK 465 TYR B 112 REMARK 465 LYS B 113 REMARK 465 ASP B 114 REMARK 465 ASP B 115 REMARK 465 ASP B 116 REMARK 465 ASP B 117 REMARK 465 LYS B 118 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 1 CG CD1 CD2 REMARK 470 ASP B 83 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2005 O HOH B 2008 1.93 REMARK 500 OD1 ASN A 92 O HOH A 2083 1.93 REMARK 500 O PHE B 36 O HOH B 2034 1.97 REMARK 500 O HOH A 2063 O HOH A 2066 2.05 REMARK 500 O HOH A 2030 O HOH A 2031 2.09 REMARK 500 O GLU A 82 O HOH A 2079 2.12 REMARK 500 OD2 ASP B 30 O HOH B 2029 2.12 REMARK 500 O ILE A 50 O HOH A 2048 2.16 REMARK 500 O ASP A 56 O HOH A 2062 2.17 REMARK 500 O HOH A 2048 O HOH A 2049 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN B 47 O HOH B 2034 1455 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 -165.52 -160.36 REMARK 500 ASN B 46 -158.62 -173.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2004 DISTANCE = 6.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 1100 DBREF 5AEA A 1 97 UNP P13591 NCAM1_HUMAN 20 116 DBREF 5AEA B 1 97 UNP P13591 NCAM1_HUMAN 20 116 SEQADV 5AEA ALA A 98 UNP P13591 EXPRESSION TAG SEQADV 5AEA ALA A 99 UNP P13591 EXPRESSION TAG SEQADV 5AEA ALA A 100 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP A 101 UNP P13591 EXPRESSION TAG SEQADV 5AEA TYR A 102 UNP P13591 EXPRESSION TAG SEQADV 5AEA LYS A 103 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP A 104 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP A 105 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP A 106 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP A 107 UNP P13591 EXPRESSION TAG SEQADV 5AEA LYS A 108 UNP P13591 EXPRESSION TAG SEQADV 5AEA ALA A 109 UNP P13591 EXPRESSION TAG SEQADV 5AEA ALA A 110 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP A 111 UNP P13591 EXPRESSION TAG SEQADV 5AEA TYR A 112 UNP P13591 EXPRESSION TAG SEQADV 5AEA LYS A 113 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP A 114 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP A 115 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP A 116 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP A 117 UNP P13591 EXPRESSION TAG SEQADV 5AEA LYS A 118 UNP P13591 EXPRESSION TAG SEQADV 5AEA ALA B 98 UNP P13591 EXPRESSION TAG SEQADV 5AEA ALA B 99 UNP P13591 EXPRESSION TAG SEQADV 5AEA ALA B 100 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP B 101 UNP P13591 EXPRESSION TAG SEQADV 5AEA TYR B 102 UNP P13591 EXPRESSION TAG SEQADV 5AEA LYS B 103 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP B 104 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP B 105 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP B 106 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP B 107 UNP P13591 EXPRESSION TAG SEQADV 5AEA LYS B 108 UNP P13591 EXPRESSION TAG SEQADV 5AEA ALA B 109 UNP P13591 EXPRESSION TAG SEQADV 5AEA ALA B 110 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP B 111 UNP P13591 EXPRESSION TAG SEQADV 5AEA TYR B 112 UNP P13591 EXPRESSION TAG SEQADV 5AEA LYS B 113 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP B 114 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP B 115 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP B 116 UNP P13591 EXPRESSION TAG SEQADV 5AEA ASP B 117 UNP P13591 EXPRESSION TAG SEQADV 5AEA LYS B 118 UNP P13591 EXPRESSION TAG SEQRES 1 A 118 LEU GLN VAL ASP ILE VAL PRO SER GLN GLY GLU ILE SER SEQRES 2 A 118 VAL GLY GLU SER LYS PHE PHE LEU CYS GLN VAL ALA GLY SEQRES 3 A 118 ASP ALA LYS ASP LYS ASP ILE SER TRP PHE SER PRO ASN SEQRES 4 A 118 GLY GLU LYS LEU THR PRO ASN GLN GLN ARG ILE SER VAL SEQRES 5 A 118 VAL TRP ASN ASP ASP SER SER SER THR LEU THR ILE TYR SEQRES 6 A 118 ASN ALA ASN ILE ASP ASP ALA GLY ILE TYR LYS CYS VAL SEQRES 7 A 118 VAL THR GLY GLU ASP GLY SER GLU SER GLU ALA THR VAL SEQRES 8 A 118 ASN VAL LYS ILE PHE GLN ALA ALA ALA ASP TYR LYS ASP SEQRES 9 A 118 ASP ASP ASP LYS ALA ALA ASP TYR LYS ASP ASP ASP ASP SEQRES 10 A 118 LYS SEQRES 1 B 118 LEU GLN VAL ASP ILE VAL PRO SER GLN GLY GLU ILE SER SEQRES 2 B 118 VAL GLY GLU SER LYS PHE PHE LEU CYS GLN VAL ALA GLY SEQRES 3 B 118 ASP ALA LYS ASP LYS ASP ILE SER TRP PHE SER PRO ASN SEQRES 4 B 118 GLY GLU LYS LEU THR PRO ASN GLN GLN ARG ILE SER VAL SEQRES 5 B 118 VAL TRP ASN ASP ASP SER SER SER THR LEU THR ILE TYR SEQRES 6 B 118 ASN ALA ASN ILE ASP ASP ALA GLY ILE TYR LYS CYS VAL SEQRES 7 B 118 VAL THR GLY GLU ASP GLY SER GLU SER GLU ALA THR VAL SEQRES 8 B 118 ASN VAL LYS ILE PHE GLN ALA ALA ALA ASP TYR LYS ASP SEQRES 9 B 118 ASP ASP ASP LYS ALA ALA ASP TYR LYS ASP ASP ASP ASP SEQRES 10 B 118 LYS HET FLC B1100 18 HETNAM FLC CITRATE ANION FORMUL 3 FLC C6 H5 O7 3- FORMUL 4 HOH *163(H2 O) HELIX 1 1 ASN A 68 ALA A 72 5 5 HELIX 2 2 ASN B 68 ALA B 72 5 5 SHEET 1 AA 4 GLN A 2 VAL A 6 0 SHEET 2 AA 4 LYS A 18 ALA A 25 -1 O LEU A 21 N VAL A 6 SHEET 3 AA 4 SER A 59 ILE A 64 -1 O SER A 60 N CYS A 22 SHEET 4 AA 4 ILE A 50 ASP A 56 -1 O SER A 51 N THR A 63 SHEET 1 AB 4 GLN A 9 SER A 13 0 SHEET 2 AB 4 GLU A 86 PHE A 96 1 O ASN A 92 N GLY A 10 SHEET 3 AB 4 GLY A 73 THR A 80 -1 O GLY A 73 N VAL A 93 SHEET 4 AB 4 ASP A 32 PHE A 36 -1 O ASP A 32 N THR A 80 SHEET 1 BA 4 VAL B 3 VAL B 6 0 SHEET 2 BA 4 LYS B 18 VAL B 24 -1 O LEU B 21 N VAL B 6 SHEET 3 BA 4 SER B 59 ILE B 64 -1 O SER B 60 N CYS B 22 SHEET 4 BA 4 ILE B 50 VAL B 53 -1 O SER B 51 N THR B 63 SHEET 1 BB 4 GLY B 10 SER B 13 0 SHEET 2 BB 4 GLU B 86 PHE B 96 1 O ASN B 92 N GLY B 10 SHEET 3 BB 4 GLY B 73 THR B 80 -1 O GLY B 73 N VAL B 93 SHEET 4 BB 4 ASP B 32 PHE B 36 -1 O ASP B 32 N THR B 80 SSBOND 1 CYS A 22 CYS A 77 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 77 1555 1555 2.04 CISPEP 1 VAL A 6 PRO A 7 0 0.95 CISPEP 2 VAL B 6 PRO B 7 0 -2.90 SITE 1 AC1 7 PHE B 19 VAL B 53 ASN B 55 THR B 61 SITE 2 AC1 7 THR B 63 ALA B 89 THR B 90 CRYST1 23.850 107.327 41.748 90.00 99.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.041929 0.000000 0.007069 0.00000 SCALE2 0.000000 0.009317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024291 0.00000