PDB Short entry for 5AJ1 HEADER STRUCTURAL PROTEIN 19-FEB-15 5AJ1 TITLE SOLUTION STRUCTURE OF THE SMARC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR COMPND 3 OF CHROMATIN SUBFAMILY B MEMBER 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: BRG1-ASSOCIATED FACTOR 47, BAF47, INTEGRASE INTERACTOR 1 COMPND 6 PROTEIN, SNF5 HOMOLOG, HSNF5, SMARC B1 DOMAIN; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: GGS AT THE N-TERMINUS RESULTS FROM A TEV CLEAVAGE COMPND 9 SITE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: MODIFIED PRSETA KEYWDS STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.D.ALLEN,S.M.V.FREUND,G.ZINZALLA,M.BYCROFT REVDAT 4 14-JUN-23 5AJ1 1 REMARK REVDAT 3 24-JAN-18 5AJ1 1 SOURCE REVDAT 2 27-APR-16 5AJ1 1 ATOM REVDAT 1 05-AUG-15 5AJ1 0 JRNL AUTH M.D.ALLEN,S.M.V.FREUND,G.ZINZALLA,M.BYCROFT JRNL TITL THE SWI/SNF SUBUNIT INI1 CONTAINS AN N-TERMINAL WINGED HELIX JRNL TITL 2 DNA BINDING DOMAIN THAT IS A TARGET FOR MUTATIONS IN JRNL TITL 3 SCHWANNOMATOSIS. JRNL REF STRUCTURE V. 23 1344 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26073604 JRNL DOI 10.1016/J.STR.2015.04.021 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON, REMARK 3 WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 5AJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1290063112. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQF-COSY; HSQC; REMARK 210 HNCACB; CBCACONH; HNCO; HNCACO; REMARK 210 HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, CNS REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE DOMAIN WAS ASSIGNED USING 13C, 15N-LABELED PROTEIN AND REMARK 210 THE STRUCTURE WAS DETERMINED USING UNLABELLED PROTEIN. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 4 112.03 -173.02 REMARK 500 1 LYS A 71 171.00 61.11 REMARK 500 1 LYS A 73 166.66 61.49 REMARK 500 1 ASP A 104 19.00 -168.31 REMARK 500 1 VAL A 110 -55.80 69.58 REMARK 500 1 SER A 111 -38.46 -159.45 REMARK 500 2 MET A 3 79.85 60.52 REMARK 500 2 ALA A 5 87.02 -168.84 REMARK 500 2 LYS A 8 -46.53 -139.77 REMARK 500 2 THR A 72 78.10 60.33 REMARK 500 2 ASN A 75 -58.53 -154.47 REMARK 500 2 THR A 76 -45.38 -156.71 REMARK 500 2 HIS A 79 -62.35 -173.07 REMARK 500 2 LEU A 84 -27.95 -179.08 REMARK 500 2 ASP A 104 18.21 -168.64 REMARK 500 2 ILE A 112 30.02 -142.02 REMARK 500 3 MET A 4 -169.02 60.63 REMARK 500 3 ALA A 5 43.09 -95.61 REMARK 500 3 SER A 7 -43.50 -164.04 REMARK 500 3 HIS A 68 157.58 71.04 REMARK 500 3 THR A 76 -80.46 -60.16 REMARK 500 3 ASP A 78 104.34 -176.60 REMARK 500 3 HIS A 79 -47.71 -144.99 REMARK 500 3 THR A 82 15.92 -145.84 REMARK 500 3 ASP A 104 15.06 -165.84 REMARK 500 3 SER A 111 -82.24 -44.37 REMARK 500 4 SER A 1 94.86 60.27 REMARK 500 4 MET A 3 172.96 60.73 REMARK 500 4 LEU A 6 -46.40 -138.05 REMARK 500 4 THR A 76 -47.06 -148.29 REMARK 500 4 TYR A 81 118.37 62.17 REMARK 500 4 ASP A 104 8.65 -160.13 REMARK 500 4 VAL A 110 -32.21 -39.46 REMARK 500 4 SER A 111 136.36 63.30 REMARK 500 5 MET A 2 174.96 60.83 REMARK 500 5 LYS A 8 -76.29 63.84 REMARK 500 5 LYS A 70 114.09 62.42 REMARK 500 5 ASP A 104 15.59 -164.21 REMARK 500 5 VAL A 110 -55.84 69.97 REMARK 500 6 MET A 4 35.29 -171.79 REMARK 500 6 HIS A 68 -92.58 -174.27 REMARK 500 6 LYS A 71 -76.02 -68.78 REMARK 500 6 THR A 72 -178.38 56.81 REMARK 500 6 LYS A 73 109.76 -59.05 REMARK 500 6 ASN A 75 -47.47 -147.92 REMARK 500 6 THR A 76 177.34 -57.83 REMARK 500 6 ASP A 78 176.15 59.53 REMARK 500 6 LEU A 84 -34.52 178.12 REMARK 500 6 ALA A 85 45.32 -87.71 REMARK 500 6 ASP A 104 15.96 -164.87 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26553 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 GGS AT THE N-TERMINUS RESULTS FROM A TEV PROTEASE CLEAVAGE REMARK 999 SITE DBREF 5AJ1 A 2 113 UNP Q12824 SNF5_HUMAN 2 113 SEQADV 5AJ1 GLY A -1 UNP Q12824 EXPRESSION TAG SEQADV 5AJ1 GLY A 0 UNP Q12824 EXPRESSION TAG SEQADV 5AJ1 SER A 1 UNP Q12824 EXPRESSION TAG SEQRES 1 A 115 GLY GLY SER MET MET MET ALA LEU SER LYS THR PHE GLY SEQRES 2 A 115 GLN LYS PRO VAL LYS PHE GLN LEU GLU ASP ASP GLY GLU SEQRES 3 A 115 PHE TYR MET ILE GLY SER GLU VAL GLY ASN TYR LEU ARG SEQRES 4 A 115 MET PHE ARG GLY SER LEU TYR LYS ARG TYR PRO SER LEU SEQRES 5 A 115 TRP ARG ARG LEU ALA THR VAL GLU GLU ARG LYS LYS ILE SEQRES 6 A 115 VAL ALA SER SER HIS GLY LYS LYS THR LYS PRO ASN THR SEQRES 7 A 115 LYS ASP HIS GLY TYR THR THR LEU ALA THR SER VAL THR SEQRES 8 A 115 LEU LEU LYS ALA SER GLU VAL GLU GLU ILE LEU ASP GLY SEQRES 9 A 115 ASN ASP GLU LYS TYR LYS ALA VAL SER ILE SER HELIX 1 1 GLY A 29 ARG A 37 1 9 HELIX 2 2 GLY A 41 TYR A 47 1 7 HELIX 3 3 THR A 56 SER A 67 1 12 HELIX 4 4 ALA A 93 GLY A 102 1 10 HELIX 5 5 ASP A 104 ALA A 109 1 6 SHEET 1 AA 4 LYS A 16 GLN A 18 0 SHEET 2 AA 4 PHE A 25 ILE A 28 -1 O TYR A 26 N PHE A 17 SHEET 3 AA 4 THR A 89 LYS A 92 -1 O LEU A 91 N MET A 27 SHEET 4 AA 4 ARG A 52 LEU A 54 -1 O ARG A 53 N LEU A 90 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000