PDB Short entry for 5AVI HEADER TRANSCRIPTION 16-JUN-15 5AVI TITLE CRYSTAL STRUCTURE OF LXRALPHA IN COMPLEX WITH TERT-BUTYL BENZOATE TITLE 2 ANALOG, COMPOUND 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYSTEROLS RECEPTOR LXR-ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, UNP RESIDUES 182-447; COMPND 5 SYNONYM: LIVER X RECEPTOR ALPHA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H COMPND 6 MEMBER 3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 676-700; COMPND 12 SYNONYM: NCOA-1,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74, COMPND 13 PROTEIN HIN-2,RIP160,RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID COMPND 14 RECEPTOR COACTIVATOR 1,SRC-1; COMPND 15 EC: 2.3.1.48; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H3, LXRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS AGONIST, COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.MATSUI,H.HANZAWA,K.TAMAKI REVDAT 2 08-NOV-23 5AVI 1 SOURCE JRNL REMARK REVDAT 1 26-AUG-15 5AVI 0 JRNL AUTH Y.MATSUI,T.YAMAGUCHI,T.YAMAZAKI,M.YOSHIDA,M.ARAI,N.TERASAKA, JRNL AUTH 2 S.HONZUMI,K.WAKABAYASHI,S.HAYASHI,D.NAKAI,H.HANZAWA,K.TAMAKI JRNL TITL DISCOVERY AND STRUCTURE-GUIDED OPTIMIZATION OF TERT-BUTYL JRNL TITL 2 6-(PHENOXYMETHYL)-3-(TRIFLUOROMETHYL)BENZOATES AS LIVER X JRNL TITL 3 RECEPTOR AGONISTS JRNL REF BIOORG.MED.CHEM.LETT. V. 25 3914 2015 JRNL REFN ESSN 1464-3405 JRNL PMID 26238323 JRNL DOI 10.1016/J.BMCL.2015.07.047 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1307 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3965 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.006 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.363 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.274 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4109 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5558 ; 1.667 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 5.463 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;36.546 ;23.707 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 735 ;17.124 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.889 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 618 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3136 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 206 A 221 5 REMARK 3 1 C 206 C 221 5 REMARK 3 2 A 253 A 314 5 REMARK 3 2 C 253 C 314 5 REMARK 3 3 A 321 A 446 5 REMARK 3 3 C 321 C 446 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 816 ; 0.08 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 C (A): 836 ; 0.33 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 816 ; 0.69 ; 2.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 836 ; 0.83 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 686 B 696 5 REMARK 3 1 D 686 D 696 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 44 ; 0.08 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 D (A): 57 ; 0.36 ; 5.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 44 ; 0.56 ; 2.00 REMARK 3 LOOSE THERMAL 2 D (A**2): 57 ; 0.62 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 446 REMARK 3 RESIDUE RANGE : B 682 B 696 REMARK 3 ORIGIN FOR THE GROUP (A): 146.8280 18.4007 69.1944 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.1163 REMARK 3 T33: 0.0414 T12: 0.0147 REMARK 3 T13: -0.0202 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.5413 L22: 1.5706 REMARK 3 L33: 2.6993 L12: 0.0813 REMARK 3 L13: -0.5322 L23: -0.6104 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: 0.1797 S13: -0.0818 REMARK 3 S21: -0.1442 S22: 0.1035 S23: 0.1591 REMARK 3 S31: -0.0957 S32: -0.4524 S33: -0.0581 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 204 C 446 REMARK 3 RESIDUE RANGE : D 682 D 696 REMARK 3 ORIGIN FOR THE GROUP (A): 166.4927 38.6575 68.5972 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.0642 REMARK 3 T33: 0.0319 T12: -0.0205 REMARK 3 T13: -0.0009 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.7504 L22: 2.1108 REMARK 3 L33: 2.8051 L12: 0.0953 REMARK 3 L13: -0.2627 L23: -1.2097 REMARK 3 S TENSOR REMARK 3 S11: 0.0988 S12: -0.2633 S13: 0.1833 REMARK 3 S21: 0.4207 S22: -0.0100 S23: -0.0169 REMARK 3 S31: -0.6323 S32: -0.0531 S33: -0.0889 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5AVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1300000019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, SCALEPACK REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20300 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1DB1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000MME, AMMONIUM SULFATE, TRIS REMARK 280 -HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.17800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.17800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.17800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.17800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.17800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.17800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.17800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.17800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 624 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 165 REMARK 465 LYS A 166 REMARK 465 HIS A 167 REMARK 465 GLN A 168 REMARK 465 HIS A 169 REMARK 465 GLN A 170 REMARK 465 HIS A 171 REMARK 465 GLN A 172 REMARK 465 HIS A 173 REMARK 465 GLN A 174 REMARK 465 HIS A 175 REMARK 465 GLN A 176 REMARK 465 HIS A 177 REMARK 465 GLN A 178 REMARK 465 GLN A 179 REMARK 465 PRO A 180 REMARK 465 LEU A 181 REMARK 465 GLN A 182 REMARK 465 GLU A 183 REMARK 465 GLU A 184 REMARK 465 GLU A 185 REMARK 465 GLN A 186 REMARK 465 ALA A 187 REMARK 465 HIS A 188 REMARK 465 ALA A 189 REMARK 465 THR A 190 REMARK 465 SER A 191 REMARK 465 LEU A 192 REMARK 465 PRO A 193 REMARK 465 PRO A 194 REMARK 465 ARG A 195 REMARK 465 ALA A 196 REMARK 465 SER A 197 REMARK 465 SER A 198 REMARK 465 PRO A 199 REMARK 465 PRO A 200 REMARK 465 GLN A 201 REMARK 465 ILE A 202 REMARK 465 LEU A 203 REMARK 465 GLN A 223 REMARK 465 CYS A 224 REMARK 465 ASN A 225 REMARK 465 ARG A 226 REMARK 465 ARG A 227 REMARK 465 SER A 228 REMARK 465 PHE A 229 REMARK 465 SER A 230 REMARK 465 ASP A 231 REMARK 465 ARG A 232 REMARK 465 LEU A 233 REMARK 465 MET A 240 REMARK 465 ALA A 241 REMARK 465 PRO A 242 REMARK 465 ASP A 243 REMARK 465 GLU A 447 REMARK 465 CYS B 676 REMARK 465 PRO B 677 REMARK 465 SER B 678 REMARK 465 SER B 679 REMARK 465 HIS B 680 REMARK 465 SER B 681 REMARK 465 GLY B 697 REMARK 465 SER B 698 REMARK 465 PRO B 699 REMARK 465 SER B 700 REMARK 465 MET C 165 REMARK 465 LYS C 166 REMARK 465 HIS C 167 REMARK 465 GLN C 168 REMARK 465 HIS C 169 REMARK 465 GLN C 170 REMARK 465 HIS C 171 REMARK 465 GLN C 172 REMARK 465 HIS C 173 REMARK 465 GLN C 174 REMARK 465 HIS C 175 REMARK 465 GLN C 176 REMARK 465 HIS C 177 REMARK 465 GLN C 178 REMARK 465 GLN C 179 REMARK 465 PRO C 180 REMARK 465 LEU C 181 REMARK 465 GLN C 182 REMARK 465 GLU C 183 REMARK 465 GLU C 184 REMARK 465 GLU C 185 REMARK 465 GLN C 186 REMARK 465 ALA C 187 REMARK 465 HIS C 188 REMARK 465 ALA C 189 REMARK 465 THR C 190 REMARK 465 SER C 191 REMARK 465 LEU C 192 REMARK 465 PRO C 193 REMARK 465 PRO C 194 REMARK 465 ARG C 195 REMARK 465 ALA C 196 REMARK 465 SER C 197 REMARK 465 SER C 198 REMARK 465 PRO C 199 REMARK 465 PRO C 200 REMARK 465 GLN C 201 REMARK 465 ILE C 202 REMARK 465 LEU C 203 REMARK 465 GLN C 223 REMARK 465 CYS C 224 REMARK 465 ASN C 225 REMARK 465 ARG C 226 REMARK 465 ARG C 227 REMARK 465 SER C 228 REMARK 465 PHE C 229 REMARK 465 SER C 230 REMARK 465 ASP C 231 REMARK 465 ARG C 232 REMARK 465 LEU C 233 REMARK 465 MET C 240 REMARK 465 ALA C 241 REMARK 465 PRO C 242 REMARK 465 ASP C 243 REMARK 465 PRO C 244 REMARK 465 HIS C 245 REMARK 465 GLU C 447 REMARK 465 CYS D 676 REMARK 465 PRO D 677 REMARK 465 SER D 678 REMARK 465 SER D 679 REMARK 465 HIS D 680 REMARK 465 SER D 681 REMARK 465 GLY D 697 REMARK 465 SER D 698 REMARK 465 PRO D 699 REMARK 465 SER D 700 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 437 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 317 14.66 58.64 REMARK 500 ASP A 318 -49.65 -144.60 REMARK 500 PHE A 365 49.93 -85.80 REMARK 500 ASP C 318 -58.03 -143.44 REMARK 500 PHE C 365 43.76 -86.27 REMARK 500 ASP C 432 17.99 59.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4KM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4KM C 501 DBREF 5AVI A 182 447 UNP Q13133 NR1H3_HUMAN 182 447 DBREF 5AVI B 676 700 UNP Q15788 NCOA1_HUMAN 676 700 DBREF 5AVI C 182 447 UNP Q13133 NR1H3_HUMAN 182 447 DBREF 5AVI D 676 700 UNP Q15788 NCOA1_HUMAN 676 700 SEQADV 5AVI MET A 165 UNP Q13133 INITIATING METHIONINE SEQADV 5AVI LYS A 166 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS A 167 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN A 168 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS A 169 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN A 170 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS A 171 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN A 172 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS A 173 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN A 174 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS A 175 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN A 176 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS A 177 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN A 178 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN A 179 UNP Q13133 EXPRESSION TAG SEQADV 5AVI PRO A 180 UNP Q13133 EXPRESSION TAG SEQADV 5AVI LEU A 181 UNP Q13133 EXPRESSION TAG SEQADV 5AVI MET C 165 UNP Q13133 INITIATING METHIONINE SEQADV 5AVI LYS C 166 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS C 167 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN C 168 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS C 169 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN C 170 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS C 171 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN C 172 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS C 173 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN C 174 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS C 175 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN C 176 UNP Q13133 EXPRESSION TAG SEQADV 5AVI HIS C 177 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN C 178 UNP Q13133 EXPRESSION TAG SEQADV 5AVI GLN C 179 UNP Q13133 EXPRESSION TAG SEQADV 5AVI PRO C 180 UNP Q13133 EXPRESSION TAG SEQADV 5AVI LEU C 181 UNP Q13133 EXPRESSION TAG SEQRES 1 A 283 MET LYS HIS GLN HIS GLN HIS GLN HIS GLN HIS GLN HIS SEQRES 2 A 283 GLN GLN PRO LEU GLN GLU GLU GLU GLN ALA HIS ALA THR SEQRES 3 A 283 SER LEU PRO PRO ARG ALA SER SER PRO PRO GLN ILE LEU SEQRES 4 A 283 PRO GLN LEU SER PRO GLU GLN LEU GLY MET ILE GLU LYS SEQRES 5 A 283 LEU VAL ALA ALA GLN GLN GLN CYS ASN ARG ARG SER PHE SEQRES 6 A 283 SER ASP ARG LEU ARG VAL THR PRO TRP PRO MET ALA PRO SEQRES 7 A 283 ASP PRO HIS SER ARG GLU ALA ARG GLN GLN ARG PHE ALA SEQRES 8 A 283 HIS PHE THR GLU LEU ALA ILE VAL SER VAL GLN GLU ILE SEQRES 9 A 283 VAL ASP PHE ALA LYS GLN LEU PRO GLY PHE LEU GLN LEU SEQRES 10 A 283 SER ARG GLU ASP GLN ILE ALA LEU LEU LYS THR SER ALA SEQRES 11 A 283 ILE GLU VAL MET LEU LEU GLU THR SER ARG ARG TYR ASN SEQRES 12 A 283 PRO GLY SER GLU SER ILE THR PHE LEU LYS ASP PHE SER SEQRES 13 A 283 TYR ASN ARG GLU ASP PHE ALA LYS ALA GLY LEU GLN VAL SEQRES 14 A 283 GLU PHE ILE ASN PRO ILE PHE GLU PHE SER ARG ALA MET SEQRES 15 A 283 ASN GLU LEU GLN LEU ASN ASP ALA GLU PHE ALA LEU LEU SEQRES 16 A 283 ILE ALA ILE SER ILE PHE SER ALA ASP ARG PRO ASN VAL SEQRES 17 A 283 GLN ASP GLN LEU GLN VAL GLU ARG LEU GLN HIS THR TYR SEQRES 18 A 283 VAL GLU ALA LEU HIS ALA TYR VAL SER ILE HIS HIS PRO SEQRES 19 A 283 HIS ASP ARG LEU MET PHE PRO ARG MET LEU MET LYS LEU SEQRES 20 A 283 VAL SER LEU ARG THR LEU SER SER VAL HIS SER GLU GLN SEQRES 21 A 283 VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS LEU PRO PRO SEQRES 22 A 283 LEU LEU SER GLU ILE TRP ASP VAL HIS GLU SEQRES 1 B 25 CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS LYS SEQRES 2 B 25 ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER SEQRES 1 C 283 MET LYS HIS GLN HIS GLN HIS GLN HIS GLN HIS GLN HIS SEQRES 2 C 283 GLN GLN PRO LEU GLN GLU GLU GLU GLN ALA HIS ALA THR SEQRES 3 C 283 SER LEU PRO PRO ARG ALA SER SER PRO PRO GLN ILE LEU SEQRES 4 C 283 PRO GLN LEU SER PRO GLU GLN LEU GLY MET ILE GLU LYS SEQRES 5 C 283 LEU VAL ALA ALA GLN GLN GLN CYS ASN ARG ARG SER PHE SEQRES 6 C 283 SER ASP ARG LEU ARG VAL THR PRO TRP PRO MET ALA PRO SEQRES 7 C 283 ASP PRO HIS SER ARG GLU ALA ARG GLN GLN ARG PHE ALA SEQRES 8 C 283 HIS PHE THR GLU LEU ALA ILE VAL SER VAL GLN GLU ILE SEQRES 9 C 283 VAL ASP PHE ALA LYS GLN LEU PRO GLY PHE LEU GLN LEU SEQRES 10 C 283 SER ARG GLU ASP GLN ILE ALA LEU LEU LYS THR SER ALA SEQRES 11 C 283 ILE GLU VAL MET LEU LEU GLU THR SER ARG ARG TYR ASN SEQRES 12 C 283 PRO GLY SER GLU SER ILE THR PHE LEU LYS ASP PHE SER SEQRES 13 C 283 TYR ASN ARG GLU ASP PHE ALA LYS ALA GLY LEU GLN VAL SEQRES 14 C 283 GLU PHE ILE ASN PRO ILE PHE GLU PHE SER ARG ALA MET SEQRES 15 C 283 ASN GLU LEU GLN LEU ASN ASP ALA GLU PHE ALA LEU LEU SEQRES 16 C 283 ILE ALA ILE SER ILE PHE SER ALA ASP ARG PRO ASN VAL SEQRES 17 C 283 GLN ASP GLN LEU GLN VAL GLU ARG LEU GLN HIS THR TYR SEQRES 18 C 283 VAL GLU ALA LEU HIS ALA TYR VAL SER ILE HIS HIS PRO SEQRES 19 C 283 HIS ASP ARG LEU MET PHE PRO ARG MET LEU MET LYS LEU SEQRES 20 C 283 VAL SER LEU ARG THR LEU SER SER VAL HIS SER GLU GLN SEQRES 21 C 283 VAL PHE ALA LEU ARG LEU GLN ASP LYS LYS LEU PRO PRO SEQRES 22 C 283 LEU LEU SER GLU ILE TRP ASP VAL HIS GLU SEQRES 1 D 25 CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS LYS SEQRES 2 D 25 ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER HET 4KM A 501 30 HET 4KM C 501 30 HETNAM 4KM TERT-BUTYL 2-[[4-[ETHANOYL(METHYL) HETNAM 2 4KM AMINO]PHENOXY]METHYL]-5-(TRIFLUOROMETHYL)BENZOATE FORMUL 5 4KM 2(C22 H24 F3 N O4) FORMUL 7 HOH *72(H2 O) HELIX 1 AA1 SER A 207 GLN A 221 1 15 HELIX 2 AA2 SER A 246 LEU A 275 1 30 HELIX 3 AA3 SER A 282 ARG A 305 1 24 HELIX 4 AA4 ASN A 322 ALA A 329 1 8 HELIX 5 AA5 GLN A 332 GLN A 350 1 19 HELIX 6 AA6 ASN A 352 PHE A 365 1 14 HELIX 7 AA7 ASP A 374 HIS A 397 1 24 HELIX 8 AA8 LEU A 402 GLN A 431 1 30 HELIX 9 AA9 PRO A 436 ASP A 444 1 9 HELIX 10 AB1 HIS B 687 GLU B 696 1 10 HELIX 11 AB2 SER C 207 GLN C 222 1 16 HELIX 12 AB3 ARG C 247 LYS C 273 1 27 HELIX 13 AB4 SER C 282 ARG C 305 1 24 HELIX 14 AB5 ASN C 322 ALA C 329 1 8 HELIX 15 AB6 GLN C 332 GLU C 348 1 17 HELIX 16 AB7 ASN C 352 PHE C 365 1 14 HELIX 17 AB8 ASP C 374 HIS C 397 1 24 HELIX 18 AB9 LEU C 402 MET C 409 1 8 HELIX 19 AC1 MET C 409 GLN C 431 1 23 HELIX 20 AC2 PRO C 436 ASP C 444 1 9 HELIX 21 AC3 HIS D 687 GLU D 696 1 10 SHEET 1 AA1 3 TYR A 306 ASN A 307 0 SHEET 2 AA1 3 SER A 312 PHE A 315 -1 O SER A 312 N ASN A 307 SHEET 3 AA1 3 PHE A 319 TYR A 321 -1 O TYR A 321 N ILE A 313 SHEET 1 AA2 3 TYR C 306 ASN C 307 0 SHEET 2 AA2 3 SER C 312 PHE C 315 -1 O SER C 312 N ASN C 307 SHEET 3 AA2 3 PHE C 319 TYR C 321 -1 O TYR C 321 N ILE C 313 SITE 1 AC1 13 PHE A 257 LEU A 260 ALA A 261 SER A 264 SITE 2 AC1 13 ILE A 295 THR A 302 ARG A 305 PHE A 315 SITE 3 AC1 13 LEU A 331 PHE A 335 GLN A 424 LEU A 428 SITE 4 AC1 13 TRP A 443 SITE 1 AC2 15 PHE C 257 LEU C 260 ALA C 261 SER C 264 SITE 2 AC2 15 ILE C 295 THR C 302 ARG C 305 PHE C 315 SITE 3 AC2 15 LEU C 331 PHE C 335 HIS C 421 GLN C 424 SITE 4 AC2 15 LEU C 428 LEU C 435 TRP C 443 CRYST1 124.356 124.356 91.916 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010879 0.00000