PDB Short entry for 5BNG HEADER PROTEIN/DNA 26-MAY-15 5BNG TITLE MONOMER OF TALE TYPE HOMEOBOX TRANSCRIPTION FACTOR MEIS1 COMPLEXES TITLE 2 WITH SPECIFIC DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN MEIS2; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: RESIDUES 283-342; COMPND 5 SYNONYM: MEIS1-RELATED PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*TP*TP*AP*GP*CP*TP*GP*TP*CP*A)-3'); COMPND 9 CHAIN: L; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*TP*GP*AP*CP*AP*GP*CP*TP*AP*A-3'); COMPND 13 CHAIN: M; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*AP*AP*TP*TP*AP*GP*CP*TP*GP*TP*CP*A)-3'); COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: DNA (5'-D(P*TP*GP*AP*CP*AP*GP*CP*TP*AP*A)-3'); COMPND 21 CHAIN: D; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEIS2, MRG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETG20A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 MOL_ID: 5; SOURCE 24 SYNTHETIC: YES; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR, TALE TYPE HOMEOBOX PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,A.JOLMA,Y.YIN,K.NITTA,K.DAVE,A.POPOV,M.TAIPALE,M.ENGE, AUTHOR 2 T.KIVIOJA,J.TAIPALE REVDAT 3 02-DEC-15 5BNG 1 JRNL REVDAT 2 18-NOV-15 5BNG 1 JRNL REVDAT 1 04-NOV-15 5BNG 0 JRNL AUTH A.JOLMA,Y.YIN,K.R.NITTA,K.DAVE,A.POPOV,M.TAIPALE,M.ENGE, JRNL AUTH 2 T.KIVIOJA,E.MORGUNOVA,J.TAIPALE JRNL TITL DNA-DEPENDENT FORMATION OF TRANSCRIPTION FACTOR PAIRS ALTERS JRNL TITL 2 THEIR BINDING SPECIFICITY. JRNL REF NATURE V. 527 384 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26550823 JRNL DOI 10.1038/NATURE15518 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 7190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.345 REMARK 3 R VALUE (WORKING SET) : 0.343 REMARK 3 FREE R VALUE : 0.388 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.4021 - 3.5002 1.00 3453 155 0.3462 0.4032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.650 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 44.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2026 REMARK 3 ANGLE : 0.727 2922 REMARK 3 CHIRALITY : 0.036 327 REMARK 3 PLANARITY : 0.003 221 REMARK 3 DIHEDRAL : 24.063 807 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7792 11.7004 6.2853 REMARK 3 T TENSOR REMARK 3 T11: 0.5081 T22: 0.2111 REMARK 3 T33: 0.3263 T12: 0.0019 REMARK 3 T13: -0.0723 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 1.5181 L22: 0.6699 REMARK 3 L33: 0.1253 L12: -0.8288 REMARK 3 L13: 0.0415 L23: 0.1217 REMARK 3 S TENSOR REMARK 3 S11: -0.3678 S12: -0.4227 S13: -0.2138 REMARK 3 S21: -0.1626 S22: 0.6565 S23: 0.0800 REMARK 3 S31: -0.1493 S32: 0.1063 S33: 0.1923 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0355 42.5940 6.7413 REMARK 3 T TENSOR REMARK 3 T11: 0.4851 T22: 0.6792 REMARK 3 T33: 0.6893 T12: 0.0301 REMARK 3 T13: -0.1355 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.0149 L22: 1.7139 REMARK 3 L33: 0.9997 L12: -0.0259 REMARK 3 L13: -0.1718 L23: -0.8544 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 1.3307 S13: -0.5318 REMARK 3 S21: 0.3448 S22: -0.0307 S23: -0.1262 REMARK 3 S31: -0.1934 S32: 0.1738 S33: -0.0428 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 26 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4454 22.4079 15.3042 REMARK 3 T TENSOR REMARK 3 T11: 0.5153 T22: 0.6669 REMARK 3 T33: 0.5003 T12: 0.0412 REMARK 3 T13: -0.0728 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 2.5952 L22: 1.3379 REMARK 3 L33: 0.3107 L12: -0.1583 REMARK 3 L13: 0.9119 L23: 0.0940 REMARK 3 S TENSOR REMARK 3 S11: -0.1198 S12: 0.2697 S13: 0.9974 REMARK 3 S21: -0.2111 S22: -0.3328 S23: 0.0377 REMARK 3 S31: 0.2999 S32: 0.7241 S33: -0.4903 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'M' AND (RESID 4 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6484 22.0833 16.1472 REMARK 3 T TENSOR REMARK 3 T11: 0.9110 T22: 1.3283 REMARK 3 T33: 1.2112 T12: -0.1765 REMARK 3 T13: -0.0018 T23: -0.3871 REMARK 3 L TENSOR REMARK 3 L11: 0.1015 L22: 0.4820 REMARK 3 L33: 0.1074 L12: -0.2333 REMARK 3 L13: 0.1398 L23: -0.2682 REMARK 3 S TENSOR REMARK 3 S11: -0.1219 S12: -0.2085 S13: 1.8649 REMARK 3 S21: 0.8126 S22: 0.5769 S23: -1.1832 REMARK 3 S31: 0.5856 S32: -0.5832 S33: 0.0094 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 26 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0341 46.1383 16.5672 REMARK 3 T TENSOR REMARK 3 T11: 0.7026 T22: 0.7697 REMARK 3 T33: 0.4281 T12: 0.0601 REMARK 3 T13: -0.0549 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 4.3426 L22: 0.6305 REMARK 3 L33: 2.3150 L12: -1.6865 REMARK 3 L13: -0.9816 L23: 0.8049 REMARK 3 S TENSOR REMARK 3 S11: 0.8927 S12: -1.9384 S13: 0.0825 REMARK 3 S21: 0.0364 S22: 0.2548 S23: -0.0796 REMARK 3 S31: -0.1131 S32: -0.1169 S33: 1.6924 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 4 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9388 45.6975 17.1356 REMARK 3 T TENSOR REMARK 3 T11: 1.1217 T22: 1.2501 REMARK 3 T33: 0.6933 T12: -0.5919 REMARK 3 T13: -0.0462 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 1.8579 L22: 0.8233 REMARK 3 L33: 0.5447 L12: -1.0905 REMARK 3 L13: -0.3432 L23: -0.0926 REMARK 3 S TENSOR REMARK 3 S11: -0.3543 S12: -1.5593 S13: -0.2442 REMARK 3 S21: 0.6324 S22: 0.0833 S23: -0.4350 REMARK 3 S31: -0.0885 S32: -0.4260 S33: 0.0206 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5BNG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9233 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.230 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 1.100 REMARK 200 R MERGE (I) : 0.34000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MAGNESIUM CHLORIDE, PEG 400, REMARK 280 HEPES, PH 7.09, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC M 15 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA C 25 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 20 56.10 -144.92 REMARK 500 PRO B 24 20.14 -77.27 REMARK 500 LYS A 7 -79.84 -82.01 REMARK 500 HIS A 23 68.63 -160.87 REMARK 500 SER A 27 -146.99 -75.97 REMARK 500 ALA A 35 -73.38 -95.86 REMARK 500 ASP A 37 -107.11 87.73 REMARK 500 LEU A 40 114.92 68.84 REMARK 500 THR A 41 77.19 -173.26 REMARK 500 ARG A 54 20.93 -79.06 REMARK 500 ARG A 55 -26.56 -141.95 REMARK 500 VAL A 57 -66.15 -91.56 REMARK 500 GLN A 63 -90.23 52.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 37 THR A 38 -142.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 110 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH L 102 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH M 107 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH M 108 DISTANCE = 10.73 ANGSTROMS REMARK 525 HOH A 107 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 108 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH A 109 DISTANCE = 7.62 ANGSTROMS DBREF 5BNG B 5 64 UNP O14770 MEIS2_HUMAN 283 342 DBREF 5BNG L 26 35 PDB 5BNG 5BNG 26 35 DBREF 5BNG M 4 16 PDB 5BNG 5BNG 4 16 DBREF 5BNG A 5 64 UNP O14770 MEIS2_HUMAN 283 342 DBREF 5BNG C 24 35 PDB 5BNG 5BNG 24 35 DBREF 5BNG D 4 13 PDB 5BNG 5BNG 4 13 SEQRES 1 B 60 PHE PRO LYS VAL ALA THR ASN ILE MET ARG ALA TRP LEU SEQRES 2 B 60 PHE GLN HIS LEU THR HIS PRO TYR PRO SER GLU GLU GLN SEQRES 3 B 60 LYS LYS GLN LEU ALA GLN ASP THR GLY LEU THR ILE LEU SEQRES 4 B 60 GLN VAL ASN ASN TRP PHE ILE ASN ALA ARG ARG ARG ILE SEQRES 5 B 60 VAL GLN PRO MET ILE ASP GLN SER SEQRES 1 L 10 DT DT DA DG DC DT DG DT DC DA SEQRES 1 M 12 DT DG DA DC DA DG DC DT DA DA DC DG SEQRES 1 A 60 PHE PRO LYS VAL ALA THR ASN ILE MET ARG ALA TRP LEU SEQRES 2 A 60 PHE GLN HIS LEU THR HIS PRO TYR PRO SER GLU GLU GLN SEQRES 3 A 60 LYS LYS GLN LEU ALA GLN ASP THR GLY LEU THR ILE LEU SEQRES 4 A 60 GLN VAL ASN ASN TRP PHE ILE ASN ALA ARG ARG ARG ILE SEQRES 5 A 60 VAL GLN PRO MET ILE ASP GLN SER SEQRES 1 C 12 DG DA DT DT DA DG DC DT DG DT DC DA SEQRES 1 D 10 DT DG DA DC DA DG DC DT DA DA FORMUL 7 HOH *33(H2 O) HELIX 1 AA1 PRO B 6 GLN B 19 1 14 HELIX 2 AA2 SER B 27 GLY B 39 1 13 HELIX 3 AA3 THR B 41 ILE B 56 1 16 HELIX 4 AA4 ILE B 56 SER B 64 1 9 HELIX 5 AA5 VAL A 8 PHE A 18 1 11 HELIX 6 AA6 GLN A 19 LEU A 21 5 3 HELIX 7 AA7 GLU A 28 LEU A 34 1 7 HELIX 8 AA8 THR A 41 VAL A 57 1 17 HELIX 9 AA9 VAL A 57 GLN A 63 1 7 CISPEP 1 ALA A 35 GLN A 36 0 5.16 CISPEP 2 LEU A 40 THR A 41 0 16.89 CRYST1 45.900 59.940 107.940 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021786 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009264 0.00000